Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003567.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

78820 .. 81209

Gene Structure 2390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

atgaaaactgtttacatagtccagaactccagcgaatatagtcatccctccacagtatgtgcatggaagcctgagtgggactcccttccccctgaaacccaagctcgattaaatgcgcgtcaaggtgttcggtacattggtttggagagagcagatgttctgaaccctctcactatggaacctgttcctgcagatggaaaaactgtgggagagataatggtgcggggaaatcttgtaatgaagggttacttaaagaacccaaaggcaaatgaggaaacttttgcaaacgggtggtttcattctggtgatcttgccgtgaaacatccagattcatacatagaaatcaaagacagatcgaaggacattatcatatcgggaggtgagaatatcagtagtgtggagcagctgctttcaggtctcgacggtagcgcggggcttgccggacggaggcatcccatacggcttctgggcagcgatcgaggtgggaggaggtcggggttgcaggtttctgggcaacgttgcaaaccggttgccgacgactccacccgaccacagactagcttcgctgaccttggcctccatccgacaagccgcgcctcgccgtcaacacttgatcgaggccggaggagcgacgtccgcactttttctgggttgcggacgtcagctctcgaacagttttgtgtgtgtgtatatatatacatacatacagatcctatctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003987 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005975 GO:0006081 GO:0006082 GO:0006083 GO:0006097 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0009987 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0016999 GO:0017144 GO:0019605 GO:0019752 GO:0032787 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044262 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046459 GO:0046487 GO:0047760 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

239

Amino Acids

26.27

Weight (kDa)

8.67

Isoelectric Point (pI)

42.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	22 - 84	8.7e-06	AMP-binding enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	636, 662
Acc36I	ACCTGC	1 cut(s)	493
AccII	CGCG	3 cut(s)	118, 431, 594
AciI	CCGC	5 cut(s)	223, 431, 592, 637, 655
AclI	AACGTT	1 cut(s)	517
AclWI	GGATC	1 cut(s)	704
AcyI	GRCGYC	2 cut(s)	633, 659
AfaI	GTAC	1 cut(s)	134
AfiI	CCNNNNNNNGG	2 cut(s)	194, 447
AgeI	ACCGGT	1 cut(s)	526
AluBI	AGCT	4 cut(s)	104, 406, 561, 665
AluI	AGCT	4 cut(s)	104, 406, 561, 665
Alw26I	GTCTC	1 cut(s)	422
AlwI	GGATC	1 cut(s)	704
AoxI	GGCC	2 cut(s)	574, 619
ApeKI	GCWGC	3 cut(s)	403, 406, 471
AsiGI	ACCGGT	1 cut(s)	526
Asp700I	GAANNNNTTC	1 cut(s)	183
AspLEI	GCGC	3 cut(s)	118, 431, 596
AsuHPI	GGTGA	2 cut(s)	317, 392
BaeI	ACNNNNGTAYC	2 cut(s)	124, 157
BbvI	GCAGC	3 cut(s)	393, 415, 483
BccI	CCATC	2 cut(s)	188, 588
BceAI	ACGGC	3 cut(s)	299, 476, 586
BcoDI	GTCTC	1 cut(s)	422
BfaI	CTAG	2 cut(s)	558, 718
BfmI	CTRYAG	1 cut(s)	189
BfuAI	ACCTGC	1 cut(s)	493
BisI	GCNGC	4 cut(s)	404, 407, 472, 592
BlsI	GCNGC	4 cut(s)	405, 408, 473, 593
BmiI	GGNNCC	1 cut(s)	180
BmsI	GCATC	1 cut(s)	460
BplI	GAGNNNNNCTC	2 cut(s)	65, 97
BpmI	CTGGAG	1 cut(s)	13
BsaHI	GRCGYC	2 cut(s)	633, 659
BsaI	GGTCTC	1 cut(s)	422
BsaJI	CCNNGG	1 cut(s)	571
BsaWI	WCCGGW	1 cut(s)	526
Bsc4I	CCNNNNNNNGG	2 cut(s)	194, 447
Bse118I	RCCGGY	1 cut(s)	526
BseDI	CCNNGG	1 cut(s)	571
BseGI	GGATG	4 cut(s)	43, 322, 451, 580
BseLI	CCNNNNNNNGG	2 cut(s)	194, 447
BseMII	CTCAG	1 cut(s)	63
BseRI	GAGGAG	2 cut(s)	502, 640
BseXI	GCAGC	3 cut(s)	393, 415, 483
Bsh1236I	CGCG	3 cut(s)	118, 431, 594
Bsh1285I	CGRYCG	1 cut(s)	478
BshFI	GGCC	2 cut(s)	576, 621
BshTI	ACCGGT	1 cut(s)	526
BsiEI	CGRYCG	1 cut(s)	478
BsiSI	CCGG	3 cut(s)	441, 527, 622
BslFI	GGGAC	1 cut(s)	92
BslI	CCNNNNNNNGG	2 cut(s)	194, 447
BsmAI	GTCTC	1 cut(s)	422
BsmFI	GGGAC	1 cut(s)	92
BsnI	GGCC	2 cut(s)	576, 621
Bso31I	GGTCTC	1 cut(s)	422
Bsp143I	GATC	5 cut(s)	307, 353, 475, 613, 709
BspACI	CCGC	5 cut(s)	223, 431, 592, 637, 655
BspANI	GGCC	2 cut(s)	576, 621
BspCNI	CTCAG	1 cut(s)	64
BspFNI	CGCG	3 cut(s)	118, 431, 594
BspLI	GGNNCC	1 cut(s)	180
BspMAI	CTGCAG	1 cut(s)	193
BspMI	ACCTGC	1 cut(s)	493
BspPI	GGATC	1 cut(s)	704
BspTNI	GGTCTC	1 cut(s)	422
BsrFI	RCCGGY	1 cut(s)	526
BssAI	RCCGGY	1 cut(s)	526
BssECI	CCNNGG	1 cut(s)	571
BssMI	GATC	5 cut(s)	307, 353, 475, 613, 709
BssNI	GRCGYC	2 cut(s)	633, 659
BssT1I	CCWWGG	1 cut(s)	571
Bst4CI	ACNGT	5 cut(s)	10, 55, 205, 425, 675
BstACI	GRCGYC	2 cut(s)	633, 659
BstC8I	GCNNGC	1 cut(s)	438
BstDEI	CTNAG	1 cut(s)	72
BstF5I	GGATG	4 cut(s)	43, 322, 451, 580
BstFNI	CGCG	3 cut(s)	118, 431, 594
BstHHI	GCGC	3 cut(s)	118, 431, 596
BstKTI	GATC	5 cut(s)	310, 356, 478, 616, 712
BstMAI	GTCTC	1 cut(s)	422
BstMBI	GATC	5 cut(s)	307, 353, 475, 613, 709
BstMCI	CGRYCG	1 cut(s)	478
BstMWI	GCNNNNNNNGC	3 cut(s)	437, 627, 636
BstSFI	CTRYAG	1 cut(s)	189
BstUI	CGCG	3 cut(s)	118, 431, 594
BstV1I	GCAGC	3 cut(s)	393, 415, 483
BstX2I	RGATCY	1 cut(s)	709
BstYI	RGATCY	1 cut(s)	709
BsuRI	GGCC	2 cut(s)	576, 621
BtsCI	GGATG	4 cut(s)	43, 322, 451, 580
BveI	ACCTGC	1 cut(s)	493
Cac8I	GCNNGC	1 cut(s)	438
CfoI	GCGC	3 cut(s)	118, 431, 596
Cfr10I	RCCGGY	1 cut(s)	526
CseI	GACGC	1 cut(s)	107
Csp6I	GTAC	1 cut(s)	133
CspAI	ACCGGT	1 cut(s)	526
CviAII	CATG	1 cut(s)	63
CviQI	GTAC	1 cut(s)	133
DdeI	CTNAG	1 cut(s)	72
DpnI	GATC	5 cut(s)	309, 355, 477, 615, 711
DpnII	GATC	5 cut(s)	307, 353, 475, 613, 709
Eco130I	CCWWGG	1 cut(s)	571
Eco31I	GGTCTC	1 cut(s)	422
EcoT14I	CCWWGG	1 cut(s)	571
ErhI	CCWWGG	1 cut(s)	571
FaeI	CATG	1 cut(s)	66
FalI	AAGNNNNNCTT	2 cut(s)	233, 265
FaqI	GGGAC	1 cut(s)	92
FatI	CATG	1 cut(s)	62
FauI	CCCGC	2 cut(s)	216, 424
Fnu4HI	GCNGC	4 cut(s)	404, 407, 472, 592
FokI	GGATG	4 cut(s)	30, 309, 438, 567
Fsp4HI	GCNGC	4 cut(s)	404, 407, 472, 592
FspBI	CTAG	2 cut(s)	558, 718
GlaI	GCGC	3 cut(s)	117, 430, 595
GluI	GCNGC	4 cut(s)	404, 407, 472, 592
GsuI	CTGGAG	1 cut(s)	13
HaeIII	GGCC	2 cut(s)	576, 621
HapII	CCGG	3 cut(s)	441, 527, 622
HgaI	GACGC	1 cut(s)	107
HhaI	GCGC	3 cut(s)	118, 431, 596
Hin1I	GRCGYC	2 cut(s)	633, 659
Hin1II	CATG	1 cut(s)	66
Hin6I	GCGC	3 cut(s)	116, 429, 594
HinP1I	GCGC	3 cut(s)	116, 429, 594
HincII	GTYRAC	1 cut(s)	606
HindII	GTYRAC	1 cut(s)	606
HinfI	GANTC	3 cut(s)	80, 329, 539
HpaII	CCGG	3 cut(s)	441, 527, 622
HphI	GGTGA	2 cut(s)	317, 392
Hpy166II	GTNNAC	2 cut(s)	13, 606
Hpy188I	TCNGA	2 cut(s)	162, 585
Hpy188III	TCNNGA	5 cut(s)	22, 326, 375, 419, 668
Hpy8I	GTNNAC	2 cut(s)	13, 606
Hpy99I	CGWCG	3 cut(s)	425, 539, 635
HpyAV	CCTTC	3 cut(s)	95, 235, 352
HpyCH4III	ACNGT	5 cut(s)	10, 55, 205, 425, 675
HpyCH4IV	ACGT	3 cut(s)	517, 633, 659
HpyCH4V	TGCA	5 cut(s)	62, 191, 284, 502, 522
HpyF10VI	GCNNNNNNNGC	3 cut(s)	437, 627, 636
HpyF3I	CTNAG	1 cut(s)	72
HpySE526I	ACGT	3 cut(s)	517, 633, 659
Hsp92I	GRCGYC	2 cut(s)	633, 659
Hsp92II	CATG	1 cut(s)	66
HspAI	GCGC	3 cut(s)	116, 429, 594
Kzo9I	GATC	5 cut(s)	307, 353, 475, 613, 709
LmnI	GCTCC	2 cut(s)	400, 627
Lsp1109I	GCAGC	3 cut(s)	393, 415, 483
LweI	GCATC	1 cut(s)	460
MaeI	CTAG	2 cut(s)	558, 718
MaeII	ACGT	3 cut(s)	517, 633, 659
MaeIII	GTNAC	1 cut(s)	245
MalI	GATC	5 cut(s)	309, 355, 477, 615, 711
MboI	GATC	5 cut(s)	307, 353, 475, 613, 709
MflI	RGATCY	1 cut(s)	709
MlyI	GAGTC	2 cut(s)	74, 533
MmeI	TCCRAC	1 cut(s)	608
MroXI	GAANNNNTTC	1 cut(s)	183
MseI	TTAA	2 cut(s)	110, 251
MslI	CAYNNNNRTG	1 cut(s)	303
MspA1I	CMGCKG	1 cut(s)	406
MspI	CCGG	3 cut(s)	441, 527, 622
MvnI	CGCG	3 cut(s)	118, 431, 594
MwoI	GCNNNNNNNGC	3 cut(s)	437, 627, 636
NdeII	GATC	5 cut(s)	307, 353, 475, 613, 709
NlaIII	CATG	1 cut(s)	66
NlaIV	GGNNCC	1 cut(s)	180
PdmI	GAANNNNTTC	1 cut(s)	183
PfeI	GAWTC	1 cut(s)	329
PinAI	ACCGGT	1 cut(s)	526
PkrI	GCNGC	4 cut(s)	405, 408, 473, 593
Ple19I	CGATCG	1 cut(s)	478
PleI	GAGTC	2 cut(s)	74, 533
PpsI	GAGTC	2 cut(s)	74, 533
Psp1406I	AACGTT	1 cut(s)	517
PspN4I	GGNNCC	1 cut(s)	180
PstI	CTGCAG	1 cut(s)	193
PsuI	RGATCY	1 cut(s)	709
PvuI	CGATCG	1 cut(s)	478
PvuII	CAGCTG	1 cut(s)	406
RsaI	GTAC	1 cut(s)	134
RsaNI	GTAC	1 cut(s)	133
RseI	CAYNNNNRTG	1 cut(s)	303
SaqAI	TTAA	2 cut(s)	110, 251
SatI	GCNGC	4 cut(s)	404, 407, 472, 592
Sau3AI	GATC	5 cut(s)	307, 353, 475, 613, 709
SchI	GAGTC	2 cut(s)	74, 533
SfaNI	GCATC	1 cut(s)	460
SfcI	CTRYAG	1 cut(s)	189
SmiMI	CAYNNNNRTG	1 cut(s)	303
SsiI	CCGC	5 cut(s)	223, 431, 592, 637, 655
SspMI	CTAG	2 cut(s)	558, 718
StyI	CCWWGG	1 cut(s)	571
TaaI	ACNGT	5 cut(s)	10, 55, 205, 425, 675
TaiI	ACGT	3 cut(s)	520, 636, 662
TaqI	TCGA	6 cut(s)	106, 356, 420, 478, 616, 669
TauI	GCSGC	1 cut(s)	594
TfiI	GAWTC	1 cut(s)	329
Tru1I	TTAA	2 cut(s)	110, 251
Tru9I	TTAA	2 cut(s)	110, 251
TseI	GCWGC	3 cut(s)	403, 406, 471
TspDTI	ATGAA	4 cut(s)	17, 254, 287, 321
TspGWI	ACGGA	1 cut(s)	460
XcmI	CCANNNNNNNNNTGG	1 cut(s)	463
XmnI	GAANNNNTTC	1 cut(s)	183
XspI	CTAG	2 cut(s)	558, 718
ZraI	GACGTC	2 cut(s)	634, 660

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.