Rmu_sc0003601.1_g000002

membrane

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003601.1
N/A
Physical Location & Seq
Forward (+)
9116 .. 9921
806 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 318 bp
atggctttgcttgattcattgttggggaatgaagccaagagatttgtgaaaaggaaagatagtgatgcaggagaagcaggtaaagcacttgaagaactcagaggttctctctacaatgagcttagaacttcagaaggcgccaagcgccaacagcaacgattttgtggcccggtggtggcgatgaccttcaatttcatggtgtctgtggggatcattctggcaaataaacttgtacatgccttatcctttccttcttgcctttctgtagttagaaaatgctttagcattttggaggctcagctccatagattttcgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

105

Amino Acids

11.65

Weight (kDa)

9.45

Isoelectric Point (pI)

47.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 68
AccB1I GGYRCC 1 cut(s) 137
AclWI GGATC 1 cut(s) 218
AcuI CTGAAG 1 cut(s) 114
AcyI GRCGYC 1 cut(s) 138
AfaI GTAC 1 cut(s) 234
AfiI CCNNNNNNNGG 1 cut(s) 175
AgsI TTSAA 2 cut(s) 92, 190
AluBI AGCT 2 cut(s) 121, 301
AluI AGCT 2 cut(s) 121, 301
AlwI GGATC 1 cut(s) 218
AoxI GGCC 1 cut(s) 166
AspLEI GCGC 2 cut(s) 140, 147
AspS9I GGNCC 1 cut(s) 167
AsuC2I CCSGG 1 cut(s) 170
BanI GGYRCC 1 cut(s) 137
BcnI CCSGG 1 cut(s) 170
BfmI CTRYAG 1 cut(s) 264
BfoI RGCGCY 2 cut(s) 141, 148
BfuAI ACCTGC 1 cut(s) 68
BlpI GCTNAGC 1 cut(s) 297
Bme1390I CCNGG 1 cut(s) 170
BmgT120I GGNCC 1 cut(s) 167
BmiI GGNNCC 1 cut(s) 139
BmrFI CCNGG 1 cut(s) 170
BmsI GCATC 1 cut(s) 55
BplI GAGNNNNNCTC 2 cut(s) 93, 125
Bpu1102I GCTNAGC 1 cut(s) 297
BpuMI CCSGG 1 cut(s) 170
BsaHI GRCGYC 1 cut(s) 138
Bsc4I CCNNNNNNNGG 1 cut(s) 175
BseLI CCNNNNNNNGG 1 cut(s) 175
BseMII CTCAG 2 cut(s) 112, 311
BshFI GGCC 1 cut(s) 168
BshNI GGYRCC 1 cut(s) 137
BsiSI CCGG 1 cut(s) 170
BslI CCNNNNNNNGG 1 cut(s) 175
BsnI GGCC 1 cut(s) 168
Bsp1407I TGTACA 1 cut(s) 232
Bsp143I GATC 1 cut(s) 210
Bsp1720I GCTNAGC 1 cut(s) 297
BspANI GGCC 1 cut(s) 168
BspCNI CTCAG 2 cut(s) 111, 310
BspLI GGNNCC 1 cut(s) 139
BspMI ACCTGC 1 cut(s) 68
BspPI GGATC 1 cut(s) 218
BspT107I GGYRCC 1 cut(s) 137
BsrGI TGTACA 1 cut(s) 232
BssMI GATC 1 cut(s) 210
BssNI GRCGYC 1 cut(s) 138
BstACI GRCGYC 1 cut(s) 138
BstAUI TGTACA 1 cut(s) 232
BstDEI CTNAG 3 cut(s) 98, 122, 297
BstH2I RGCGCY 2 cut(s) 141, 148
BstHHI GCGC 2 cut(s) 140, 147
BstKTI GATC 1 cut(s) 213
BstMBI GATC 1 cut(s) 210
BstMWI GCNNNNNNNGC 4 cut(s) 74, 83, 144, 151
BstNSI RCATGY 1 cut(s) 239
BstSCI CCNGG 1 cut(s) 168
BstSFI CTRYAG 1 cut(s) 264
BsuRI GGCC 1 cut(s) 168
BtgZI GCGATG 1 cut(s) 194
BveI ACCTGC 1 cut(s) 68
CfoI GCGC 2 cut(s) 140, 147
Cfr13I GGNCC 1 cut(s) 167
Csp6I GTAC 1 cut(s) 233
CviAII CATG 2 cut(s) 196, 236
CviJI RGCY 6 cut(s) 5, 35, 121, 168, 296, 301
CviKI_1 RGCY 6 cut(s) 5, 35, 121, 168, 296, 301
CviQI GTAC 1 cut(s) 233
DdeI CTNAG 3 cut(s) 98, 122, 297
DinI GGCGCC 1 cut(s) 139
DpnI GATC 1 cut(s) 212
DpnII GATC 1 cut(s) 210
Eco57I CTGAAG 1 cut(s) 114
EgeI GGCGCC 1 cut(s) 139
EheI GGCGCC 1 cut(s) 139
FaeI CATG 2 cut(s) 199, 239
FaiI YATR 3 cut(s) 197, 237, 306
FatI CATG 2 cut(s) 195, 235
GlaI GCGC 2 cut(s) 139, 146
HaeII RGCGCY 2 cut(s) 141, 148
HaeIII GGCC 1 cut(s) 168
HapII CCGG 1 cut(s) 170
HhaI GCGC 2 cut(s) 140, 147
Hin1I GRCGYC 1 cut(s) 138
Hin1II CATG 2 cut(s) 199, 239
Hin6I GCGC 2 cut(s) 138, 145
HinP1I GCGC 2 cut(s) 138, 145
HinfI GANTC 1 cut(s) 14
HpaII CCGG 1 cut(s) 170
Hpy188I TCNGA 2 cut(s) 101, 133
HpyAV CCTTC 3 cut(s) 128, 196, 261
HpyCH4V TGCA 1 cut(s) 68
HpyF10VI GCNNNNNNNGC 4 cut(s) 74, 83, 144, 151
HpyF3I CTNAG 3 cut(s) 98, 122, 297
Hsp92I GRCGYC 1 cut(s) 138
Hsp92II CATG 2 cut(s) 199, 239
HspAI GCGC 2 cut(s) 138, 145
KasI GGCGCC 1 cut(s) 137
Kzo9I GATC 1 cut(s) 210
LmnI GCTCC 1 cut(s) 306
LpnPI CCDG 4 cut(s) 54, 63, 183, 203
LweI GCATC 1 cut(s) 55
MalI GATC 1 cut(s) 212
MboI GATC 1 cut(s) 210
MboII GAAGA 1 cut(s) 104
MluCI AATT 1 cut(s) 190
Mly113I GGCGCC 1 cut(s) 138
MnlI CCTC 2 cut(s) 95, 286
MspI CCGG 1 cut(s) 170
MspR9I CCNGG 1 cut(s) 170
MwoI GCNNNNNNNGC 4 cut(s) 74, 83, 144, 151
NarI GGCGCC 1 cut(s) 138
NciI CCSGG 1 cut(s) 170
NdeII GATC 1 cut(s) 210
NlaIII CATG 2 cut(s) 199, 239
NlaIV GGNNCC 1 cut(s) 139
NspI RCATGY 1 cut(s) 239
PfeI GAWTC 1 cut(s) 14
PluTI GGCGCC 1 cut(s) 141
PspN4I GGNNCC 1 cut(s) 139
PspPI GGNCC 1 cut(s) 167
RsaI GTAC 1 cut(s) 234
RsaNI GTAC 1 cut(s) 233
Sau3AI GATC 1 cut(s) 210
Sau96I GGNCC 1 cut(s) 167
ScrFI CCNGG 1 cut(s) 170
SetI ASST 5 cut(s) 82, 106, 123, 188, 303
SfaNI GCATC 1 cut(s) 55
SfcI CTRYAG 1 cut(s) 264
SfoI GGCGCC 1 cut(s) 139
Sse9I AATT 1 cut(s) 190
SspDI GGCGCC 1 cut(s) 137
StyD4I CCNGG 1 cut(s) 168
TasI AATT 1 cut(s) 190
TatI WGTACW 1 cut(s) 232
TfiI GAWTC 1 cut(s) 14
TspDTI ATGAA 3 cut(s) 6, 45, 184
XceI RCATGY 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.