Rmu_sc0003607.1_g000012

TMV resistance protein N-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003607.1
N/A
Physical Location & Seq
Forward (+)
29787 .. 30233
447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003607.1_g000012.1.cds

Sequence Viewer

Length: 447 bp
atgtataatagtttaaaaaactctccttctccacccacctctctcctcctctcctcttcttcttcctctgtgcattcccagtttgctggacttgcgatcatcgttctttcgccaaattatgcttcttcctcctggtgtttggatgaactcgtaaagattgttgaatgcatgggaaccaggaatgcaattctgccagttttctatgatgtggatccgtctgatgttagaaagcaaagtggaagctttgcggaagcctttgccaagcatgaagagaactttattcaagaaaacgaaaaaaagaaaatggagaggtggagagaagctttaacgatagtggcaaatctttctgggtggcattcaaagaattctggaggttgccggaattcgatttggagcagatcgggtctagtgctgcaggcgggtcgagtctgcaggcggtatgggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

148

Amino Acids

16.42

Weight (kDa)

8.98

Isoelectric Point (pI)

72.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 248, 419, 436
AclWI GGATC 2 cut(s) 206, 219
AcsI RAATTY 2 cut(s) 364, 382
AgsI TTSAA 3 cut(s) 164, 284, 360
AjnI CCWGG 2 cut(s) 131, 176
AjuI GAANNNNNNNTTGG 2 cut(s) 106, 138
AluBI AGCT 2 cut(s) 243, 323
AluI AGCT 2 cut(s) 243, 323
AlwI GGATC 2 cut(s) 206, 219
ApeKI GCWGC 1 cut(s) 412
ApoI RAATTY 2 cut(s) 364, 382
BamHI GGATCC 1 cut(s) 211
BbvI GCAGC 1 cut(s) 399
BcgI CGANNNNNNTGC 2 cut(s) 404, 438
BciT130I CCWGG 2 cut(s) 133, 178
BfaI CTAG 1 cut(s) 407
BfmI CTRYAG 2 cut(s) 413, 430
BisI GCNGC 1 cut(s) 413
BlsI GCNGC 1 cut(s) 414
Bme1390I CCNGG 2 cut(s) 133, 178
BmiI GGNNCC 2 cut(s) 175, 213
BmrFI CCNGG 2 cut(s) 133, 178
BmrI ACTGGG 1 cut(s) 73
BmuI ACTGGG 1 cut(s) 73
BpmI CTGGAG 1 cut(s) 390
BsaBI GATNNNNATC 1 cut(s) 210
Bse1I ACTGG 2 cut(s) 79, 194
Bse8I GATNNNNATC 1 cut(s) 210
BseBI CCWGG 2 cut(s) 133, 178
BseGI GGATG 1 cut(s) 148
BseJI GATNNNNATC 1 cut(s) 210
BseNI ACTGG 2 cut(s) 79, 194
BseRI GAGGAG 3 cut(s) 35, 38, 43
BseXI GCAGC 1 cut(s) 399
BsiSI CCGG 1 cut(s) 379
BsmI GAATGC 4 cut(s) 73, 170, 187, 355
Bsp143I GATC 3 cut(s) 96, 211, 398
BspACI CCGC 3 cut(s) 248, 419, 436
BspLI GGNNCC 2 cut(s) 175, 213
BspMAI CTGCAG 2 cut(s) 417, 434
BspPI GGATC 2 cut(s) 206, 219
BsrI ACTGG 2 cut(s) 79, 194
BssMI GATC 3 cut(s) 96, 211, 398
Bst2UI CCWGG 2 cut(s) 133, 178
Bst6I CTCTTC 2 cut(s) 61, 264
BstC8I GCNNGC 2 cut(s) 417, 434
BstF5I GGATG 1 cut(s) 148
BstKTI GATC 3 cut(s) 99, 214, 401
BstMBI GATC 3 cut(s) 96, 211, 398
BstMWI GCNNNNNNNGC 1 cut(s) 92
BstNI CCWGG 2 cut(s) 133, 178
BstSCI CCNGG 2 cut(s) 131, 176
BstSFI CTRYAG 2 cut(s) 413, 430
BstV1I GCAGC 1 cut(s) 399
BstX2I RGATCY 1 cut(s) 211
BstXI CCANNNNNNTGG 1 cut(s) 86
BstYI RGATCY 1 cut(s) 211
BtsCI GGATG 1 cut(s) 148
Cac8I GCNNGC 2 cut(s) 417, 434
CviAII CATG 2 cut(s) 169, 266
CviJI RGCY 3 cut(s) 243, 254, 323
CviKI_1 RGCY 3 cut(s) 243, 254, 323
DpnI GATC 3 cut(s) 98, 213, 400
DpnII GATC 3 cut(s) 96, 211, 398
DraI TTTAAA 1 cut(s) 15
Eam1104I CTCTTC 2 cut(s) 61, 264
EarI CTCTTC 2 cut(s) 61, 264
EcoRI GAATTC 2 cut(s) 364, 382
EcoRII CCWGG 2 cut(s) 131, 176
EcoT22I ATGCAT 1 cut(s) 170
FaeI CATG 2 cut(s) 172, 269
FaiI YATR 6 cut(s) 6, 120, 170, 204, 267, 441
FatI CATG 2 cut(s) 168, 265
FauI CCCGC 1 cut(s) 412
Fnu4HI GCNGC 1 cut(s) 413
FokI GGATG 1 cut(s) 155
Fsp4HI GCNGC 1 cut(s) 413
FspBI CTAG 1 cut(s) 407
GluI GCNGC 1 cut(s) 413
GsuI CTGGAG 1 cut(s) 390
HapII CCGG 1 cut(s) 379
Hin1II CATG 2 cut(s) 172, 269
HindIII AAGCTT 2 cut(s) 241, 321
HinfI GANTC 1 cut(s) 426
HpaII CCGG 1 cut(s) 379
Hpy188I TCNGA 1 cut(s) 220
Hpy188III TCNNGA 2 cut(s) 284, 369
HpyAV CCTTC 1 cut(s) 36
HpyCH4V TGCA 5 cut(s) 73, 168, 185, 415, 432
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
Hsp92II CATG 2 cut(s) 172, 269
Kzo9I GATC 3 cut(s) 96, 211, 398
LmnI GCTCC 1 cut(s) 393
Lsp1109I GCAGC 1 cut(s) 399
MaeI CTAG 1 cut(s) 407
MalI GATC 3 cut(s) 98, 213, 400
MboI GATC 3 cut(s) 96, 211, 398
MboII GAAGA 5 cut(s) 48, 51, 54, 117, 281
MflI RGATCY 1 cut(s) 211
MluCI AATT 4 cut(s) 115, 186, 364, 382
MlyI GAGTC 1 cut(s) 435
MnlI CCTC 8 cut(s) 49, 56, 59, 64, 76, 139, 303, 365
Mph1103I ATGCAT 1 cut(s) 170
MseI TTAA 2 cut(s) 14, 326
MspI CCGG 1 cut(s) 379
MspR9I CCNGG 2 cut(s) 133, 178
Mva1269I GAATGC 4 cut(s) 73, 170, 187, 355
MvaI CCWGG 2 cut(s) 133, 178
MwoI GCNNNNNNNGC 1 cut(s) 92
NdeII GATC 3 cut(s) 96, 211, 398
NlaIII CATG 2 cut(s) 172, 269
NlaIV GGNNCC 2 cut(s) 175, 213
NsiI ATGCAT 1 cut(s) 170
PctI GAATGC 4 cut(s) 73, 170, 187, 355
PkrI GCNGC 1 cut(s) 414
PleI GAGTC 1 cut(s) 434
PpsI GAGTC 1 cut(s) 434
Psp6I CCWGG 2 cut(s) 131, 176
PspGI CCWGG 2 cut(s) 131, 176
PspN4I GGNNCC 2 cut(s) 175, 213
PstI CTGCAG 2 cut(s) 417, 434
PsuI RGATCY 1 cut(s) 211
SaqAI TTAA 2 cut(s) 14, 326
SatI GCNGC 1 cut(s) 413
Sau3AI GATC 3 cut(s) 96, 211, 398
SchI GAGTC 1 cut(s) 435
ScrFI CCNGG 2 cut(s) 133, 178
SetI ASST 5 cut(s) 41, 245, 314, 325, 376
SfcI CTRYAG 2 cut(s) 413, 430
Sse9I AATT 4 cut(s) 115, 186, 364, 382
SsiI CCGC 3 cut(s) 248, 419, 436
SspMI CTAG 1 cut(s) 407
StyD4I CCNGG 2 cut(s) 131, 176
TaqI TCGA 2 cut(s) 386, 424
TasI AATT 4 cut(s) 115, 186, 364, 382
Tru1I TTAA 2 cut(s) 14, 326
Tru9I TTAA 2 cut(s) 14, 326
TseI GCWGC 1 cut(s) 412
TspDTI ATGAA 2 cut(s) 159, 282
TspGWI ACGGA 1 cut(s) 204
XapI RAATTY 2 cut(s) 364, 382
XspI CTAG 1 cut(s) 407
Zsp2I ATGCAT 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.