Rmu_sc0003610.1_g000019

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003610.1
N/A
Physical Location & Seq
Reverse (-)
74219 .. 77706
3488 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 846 bp
atggcaagtgaagaagcaacccagattatactaatgcaagatctagaggagaacaagaactcagcgaggtcagtggcggcgcggtcggtggatctcagtcggatgaatccgatctgggttggttttctcgaatccgagctggagaaggcgttgttggctggggctttcaactttgcatttaaaggttacttcaaaagcatttttggccgctcaaaagagaaagatggatacataaagtggtttgctggaaatgtggcttcaggaagcgctgctggagcaacaacttcattatttctatatcatctggattatgcacgtacacggctaggcactgatgcaaggcatggtggagttaatggacgacaacaattcagagggcttctagatgtttactgtaaaaccttttcaagtgatggattagtgggtctctatcgaggttttggggtttccattattggaattacgctgtaccgaggcatgtactttgggatttatgacaccttgaagcctattgttttggttggacctttagagggaaattttttggctagtttctttcttggttggagtgtcacaacagtctccgggatctgtgcctatccatttgatactcttcggaggagaatgatgttaacctcaggacacgccataaagtatcgcaatggcttacatgcatttcgggagattgtttaccttgagggtttcaaagcactgttccgaggagttactgcaaatatgcttgtaggagttgctggggctggtgtacttgcaggatatgatcagctgcaacgacttgcatgtaaacatggttattctgttgagccaaatcaaagagttgcgaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000295 GO:0003006 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005471 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005783 GO:0005789 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0006996 GO:0007005 GO:0007006 GO:0007275 GO:0008150 GO:0008509 GO:0008514 GO:0009791 GO:0009987 GO:0010154 GO:0012505 GO:0015075 GO:0015215 GO:0015216 GO:0015217 GO:0015238 GO:0015291 GO:0015297 GO:0015301 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022414 GO:0022622 GO:0022804 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0031984 GO:0032501 GO:0032502 GO:0034220 GO:0042175 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046902 GO:0048316 GO:0048364 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0061024 GO:0061458 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071840 GO:0090559 GO:0098656 GO:0098827 GO:0099402 GO:0099516 GO:1901264 GO:1901505 GO:1901679
KEGG Pathways
Metabolic & Signaling
ko04020 ko04022 ko04217 ko04218 ko05012 ko05016 ko05166 map04020 map04022 map04217 map04218 map05012 map05016 map05166
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

281

Amino Acids

30.95

Weight (kDa)

9.51

Isoelectric Point (pI)

22.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 81 - 171 4.3e-17 Mitochondrial carrier protein
Mito_carr PF00153 180 - 268 8.2e-17 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 210
AccII CGCG 1 cut(s) 82
AciI CCGC 3 cut(s) 77, 82, 208
AclWI GGATC 2 cut(s) 99, 596
AcoI YGGCCR 1 cut(s) 205
AcsI RAATTY 1 cut(s) 538
AcuI CTGAAG 1 cut(s) 243
AfaI GTAC 4 cut(s) 319, 470, 482, 765
AfeI AGCGCT 1 cut(s) 268
AfiI CCNNNNNNNGG 1 cut(s) 533
AgsI TTSAA 5 cut(s) 169, 193, 408, 505, 706
AjuI GAANNNNNNNTTGG 2 cut(s) 137, 169
AluBI AGCT 2 cut(s) 139, 784
AluI AGCT 2 cut(s) 139, 784
Alw26I GTCTC 2 cut(s) 431, 586
AlwI GGATC 2 cut(s) 99, 596
Aor51HI AGCGCT 1 cut(s) 268
AoxI GGCC 1 cut(s) 205
ApeKI GCWGC 2 cut(s) 269, 784
ApoI RAATTY 1 cut(s) 538
AspLEI GCGC 2 cut(s) 82, 269
AspS9I GGNCC 1 cut(s) 524
AsuC2I CCSGG 1 cut(s) 586
AvaII GGWCC 1 cut(s) 524
AxyI CCTNAGG 1 cut(s) 637
BbvI GCAGC 2 cut(s) 256, 771
BccI CCATC 2 cut(s) 218, 407
BceAI ACGGC 1 cut(s) 338
BciVI GTATCC 1 cut(s) 221
BclI TGATCA 1 cut(s) 778
BcnI CCSGG 1 cut(s) 586
BcoDI GTCTC 2 cut(s) 431, 586
BfaI CTAG 4 cut(s) 44, 326, 383, 549
BfoI RGCGCY 1 cut(s) 270
BfuI GTATCC 1 cut(s) 221
BglII AGATCT 1 cut(s) 40
BisI GCNGC 4 cut(s) 78, 208, 270, 785
BlsI GCNGC 4 cut(s) 79, 209, 271, 786
Bme1390I CCNGG 1 cut(s) 586
Bme18I GGWCC 1 cut(s) 524
BmgT120I GGNCC 1 cut(s) 524
BmrFI CCNGG 1 cut(s) 586
BmsI GCATC 1 cut(s) 325
BpmI CTGGAG 2 cut(s) 161, 294
BpuEI CTTGAG 1 cut(s) 716
BpuMI CCSGG 1 cut(s) 586
BsaAI YACGTR 1 cut(s) 317
BsaI GGTCTC 1 cut(s) 431
BsaJI CCNNGG 2 cut(s) 472, 718
BsaXI ACNNNNNCTCC 2 cut(s) 134, 164
Bsc4I CCNNNNNNNGG 1 cut(s) 533
Bse21I CCTNAGG 1 cut(s) 637
Bse3DI GCAATG 1 cut(s) 667
BseDI CCNNGG 2 cut(s) 472, 718
BseGI GGATG 1 cut(s) 108
BseLI CCNNNNNNNGG 1 cut(s) 533
BseMI GCAATG 1 cut(s) 667
BseMII CTCAG 3 cut(s) 75, 109, 651
BseRI GAGGAG 3 cut(s) 62, 634, 735
BseXI GCAGC 2 cut(s) 256, 771
BseYI CCCAGC 2 cut(s) 158, 752
Bsh1236I CGCG 1 cut(s) 82
Bsh1285I CGRYCG 1 cut(s) 86
BshFI GGCC 1 cut(s) 207
BsiEI CGRYCG 1 cut(s) 86
BsiSI CCGG 1 cut(s) 585
BslI CCNNNNNNNGG 1 cut(s) 533
BsmAI GTCTC 2 cut(s) 431, 586
BsnI GGCC 1 cut(s) 207
Bso31I GGTCTC 1 cut(s) 431
Bsp143I GATC 5 cut(s) 40, 91, 111, 588, 778
BspACI CCGC 3 cut(s) 77, 82, 208
BspANI GGCC 1 cut(s) 207
BspCNI CTCAG 3 cut(s) 74, 108, 650
BspFNI CGCG 1 cut(s) 82
BspPI GGATC 2 cut(s) 99, 596
BspTNI GGTCTC 1 cut(s) 431
BsrBI CCGCTC 1 cut(s) 210
BsrDI GCAATG 1 cut(s) 667
BssECI CCNNGG 2 cut(s) 472, 718
BssMI GATC 5 cut(s) 40, 91, 111, 588, 778
Bst4CI ACNGT 3 cut(s) 395, 580, 714
Bst6I CTCTTC 1 cut(s) 618
BstBAI YACGTR 1 cut(s) 317
BstDEI CTNAG 3 cut(s) 61, 95, 637
BstF5I GGATG 1 cut(s) 108
BstFNI CGCG 1 cut(s) 82
BstH2I RGCGCY 1 cut(s) 270
BstHHI GCGC 2 cut(s) 82, 269
BstKTI GATC 5 cut(s) 43, 94, 114, 591, 781
BstMAI GTCTC 2 cut(s) 431, 586
BstMBI GATC 5 cut(s) 40, 91, 111, 588, 778
BstMCI CGRYCG 1 cut(s) 86
BstMWI GCNNNNNNNGC 3 cut(s) 155, 204, 275
BstNSI RCATGY 3 cut(s) 481, 674, 801
BstSCI CCNGG 1 cut(s) 584
BstUI CGCG 1 cut(s) 82
BstV1I GCAGC 2 cut(s) 256, 771
BstX2I RGATCY 3 cut(s) 40, 91, 588
BstYI RGATCY 3 cut(s) 40, 91, 588
Bsu36I CCTNAGG 1 cut(s) 637
BsuI GTATCC 1 cut(s) 221
BsuRI GGCC 1 cut(s) 207
BtsCI GGATG 1 cut(s) 108
BtsIMutI CAGTG 3 cut(s) 78, 330, 710
CfoI GCGC 2 cut(s) 82, 269
Cfr13I GGNCC 1 cut(s) 524
Csp6I GTAC 4 cut(s) 318, 469, 481, 764
CviAII CATG 5 cut(s) 344, 478, 671, 798, 806
CviQI GTAC 4 cut(s) 318, 469, 481, 764
DdeI CTNAG 3 cut(s) 61, 95, 637
DpnI GATC 5 cut(s) 42, 93, 113, 590, 780
DpnII GATC 5 cut(s) 40, 91, 111, 588, 778
DraI TTTAAA 1 cut(s) 181
EaeI YGGCCR 1 cut(s) 205
Eam1104I CTCTTC 1 cut(s) 618
EarI CTCTTC 1 cut(s) 618
Eco31I GGTCTC 1 cut(s) 431
Eco47I GGWCC 1 cut(s) 524
Eco47III AGCGCT 1 cut(s) 268
Eco57I CTGAAG 1 cut(s) 243
Eco81I CCTNAGG 1 cut(s) 637
EcoT22I ATGCAT 1 cut(s) 676
FaeI CATG 5 cut(s) 347, 481, 674, 801, 809
FatI CATG 5 cut(s) 343, 477, 670, 797, 805
FbaI TGATCA 1 cut(s) 778
Fnu4HI GCNGC 4 cut(s) 78, 208, 270, 785
FokI GGATG 1 cut(s) 115
Fsp4HI GCNGC 4 cut(s) 78, 208, 270, 785
FspBI CTAG 4 cut(s) 44, 326, 383, 549
GlaI GCGC 2 cut(s) 81, 268
GluI GCNGC 4 cut(s) 78, 208, 270, 785
GsaI CCCAGC 2 cut(s) 162, 756
GsuI CTGGAG 2 cut(s) 161, 294
HaeII RGCGCY 1 cut(s) 270
HaeIII GGCC 1 cut(s) 207
HapII CCGG 1 cut(s) 585
HhaI GCGC 2 cut(s) 82, 269
Hin1II CATG 5 cut(s) 347, 481, 674, 801, 809
Hin6I GCGC 2 cut(s) 80, 267
HinP1I GCGC 2 cut(s) 80, 267
HincII GTYRAC 1 cut(s) 633
HindII GTYRAC 1 cut(s) 633
HinfI GANTC 2 cut(s) 106, 131
HpaI GTTAAC 1 cut(s) 633
HpaII CCGG 1 cut(s) 585
Hpy166II GTNNAC 6 cut(s) 320, 391, 633, 691, 764, 803
Hpy188I TCNGA 6 cut(s) 102, 111, 136, 374, 618, 719
Hpy188III TCNNGA 7 cut(s) 44, 128, 261, 305, 383, 639, 680
Hpy8I GTNNAC 6 cut(s) 320, 391, 633, 691, 764, 803
HpyAV CCTTC 1 cut(s) 139
HpyCH4III ACNGT 3 cut(s) 395, 580, 714
HpyCH4IV ACGT 1 cut(s) 316
HpyCH4V TGCA 9 cut(s) 37, 176, 314, 338, 674, 731, 770, 787, 797
HpyF10VI GCNNNNNNNGC 3 cut(s) 155, 204, 275
HpyF3I CTNAG 3 cut(s) 61, 95, 637
HpySE526I ACGT 1 cut(s) 316
Hsp92II CATG 5 cut(s) 347, 481, 674, 801, 809
HspAI GCGC 2 cut(s) 80, 267
Ksp22I TGATCA 1 cut(s) 778
KspAI GTTAAC 1 cut(s) 633
Kzo9I GATC 5 cut(s) 40, 91, 111, 588, 778
LmnI GCTCC 1 cut(s) 275
Lsp1109I GCAGC 2 cut(s) 256, 771
LweI GCATC 1 cut(s) 325
MaeI CTAG 4 cut(s) 44, 326, 383, 549
MaeII ACGT 1 cut(s) 316
MaeIII GTNAC 3 cut(s) 185, 571, 724
MalI GATC 5 cut(s) 42, 93, 113, 590, 780
MbiI CCGCTC 1 cut(s) 210
MboI GATC 5 cut(s) 40, 91, 111, 588, 778
MboII GAAGA 2 cut(s) 23, 605
MflI RGATCY 3 cut(s) 40, 91, 588
MluCI AATT 3 cut(s) 368, 459, 538
MmeI TCCRAC 3 cut(s) 80, 502, 545
Mph1103I ATGCAT 1 cut(s) 676
MseI TTAA 3 cut(s) 180, 354, 632
MspA1I CMGCKG 1 cut(s) 784
MspI CCGG 1 cut(s) 585
MspR9I CCNGG 1 cut(s) 586
MvnI CGCG 1 cut(s) 82
MwoI GCNNNNNNNGC 3 cut(s) 155, 204, 275
NciI CCSGG 1 cut(s) 586
NdeII GATC 5 cut(s) 40, 91, 111, 588, 778
NlaIII CATG 5 cut(s) 347, 481, 674, 801, 809
NmuCI GTSAC 1 cut(s) 571
NsiI ATGCAT 1 cut(s) 676
NspI RCATGY 3 cut(s) 481, 674, 801
PfeI GAWTC 2 cut(s) 106, 131
PfoI TCCNGGA 1 cut(s) 584
PkrI GCNGC 4 cut(s) 79, 209, 271, 786
Ppu21I YACGTR 1 cut(s) 317
PspFI CCCAGC 2 cut(s) 158, 752
PspPI GGNCC 1 cut(s) 524
PsuI RGATCY 3 cut(s) 40, 91, 588
PvuII CAGCTG 1 cut(s) 784
RsaI GTAC 4 cut(s) 319, 470, 482, 765
RsaNI GTAC 4 cut(s) 318, 469, 481, 764
SaqAI TTAA 3 cut(s) 180, 354, 632
SatI GCNGC 4 cut(s) 78, 208, 270, 785
Sau3AI GATC 5 cut(s) 40, 91, 111, 588, 778
Sau96I GGNCC 1 cut(s) 524
ScrFI CCNGG 1 cut(s) 586
SfaNI GCATC 1 cut(s) 325
SinI GGWCC 1 cut(s) 524
SmlI CTYRAG 1 cut(s) 695
SmoI CTYRAG 1 cut(s) 695
Sse9I AATT 3 cut(s) 368, 459, 538
SsiI CCGC 3 cut(s) 77, 82, 208
SspMI CTAG 4 cut(s) 44, 326, 383, 549
StyD4I CCNGG 1 cut(s) 584
TaaI ACNGT 3 cut(s) 395, 580, 714
TaiI ACGT 1 cut(s) 319
TaqI TCGA 2 cut(s) 129, 433
TasI AATT 3 cut(s) 368, 459, 538
TatI WGTACW 2 cut(s) 480, 763
TauI GCSGC 2 cut(s) 80, 210
TfiI GAWTC 2 cut(s) 106, 131
Tru1I TTAA 3 cut(s) 180, 354, 632
Tru9I TTAA 3 cut(s) 180, 354, 632
TscAI CASTG 3 cut(s) 78, 337, 717
TseFI GTSAC 1 cut(s) 571
TseI GCWGC 2 cut(s) 269, 784
Tsp45I GTSAC 1 cut(s) 571
TspDTI ATGAA 2 cut(s) 119, 276
TspRI CASTG 3 cut(s) 78, 337, 717
VpaK11BI GGWCC 1 cut(s) 524
XapI RAATTY 1 cut(s) 538
XbaI TCTAGA 2 cut(s) 43, 382
XceI RCATGY 3 cut(s) 481, 674, 801
XspI CTAG 4 cut(s) 44, 326, 383, 549
Zsp2I ATGCAT 1 cut(s) 676
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.