Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003613.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

89935 .. 92475

Gene Structure 2541 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

atggacctggccttatcacaaaaagtggattttggattggctctagggctcctgcctccacccttactaatctctcttccaactgctgcactttttgtacgtaggatcaaggcggtagcgtcggctacaagcctagcttgtgaactccgtgtgacttggttttggtgttgcctggggacttcccactgttcttgcttgtcttgtgctgaggttggcacgcgattccagagtgttgaagagtgcacggttaactataaccgtggggttagtgggttagggattgacgaactggtccgcttgctcgtcgatgatttccccgctaccaagctcgtcctcaacatcttcgtttgtgagaacggcgatcgtctcaccaaggctgccaaggtcttggagcaactcagctgccagactcctgttttctccaaagctcggtacactgtgaggtctttcagaatcatgggtaatgagaagatcgcttgctatgttactgttaggggagagaaggcaatgtcactgttggtgagtgtgctgaaggtgaaggagtatgagcttttgagtaagaacatcagtgatactggctgctttggatttgttattcaggagcatatcgatcttggaattaaatttcttcaactcttcaaaaaaggtgacattgagctcccacaacttcaggctgccattgagctgctagatgcttccatatttttcttctttctgttacgctatttgagttgggaaagggcggcgcgtggggcccatacgcagtcacctgttgtggctgatgggggcgcgtccggccattccaggcattctagtttggtcgagtatattgttatgagcatatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L5 Ribosomal_L5_C

Protein Analysis

281

Amino Acids

30.99

Weight (kDa)

7.98

Isoelectric Point (pI)

41.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L5	PF00281	108 - 152	1.8e-11	Ribosomal protein L5
Ribosomal_L5_C	PF00673	157 - 209	3.9e-06	ribosomal L5P family C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	290
AccII	CGCG	3 cut(s)	220, 748, 791
AciI	CCGC	4 cut(s)	113, 295, 318, 743
AclWI	GGATC	1 cut(s)	113
AcoI	YGGCCR	1 cut(s)	796
AcsI	RAATTY	1 cut(s)	623
AcuI	CTGAAG	2 cut(s)	551, 653
AfaI	GTAC	2 cut(s)	99, 434
AfiI	CCNNNNNNNGG	1 cut(s)	429
AgsI	TTSAA	3 cut(s)	236, 632, 640
AjnI	CCWGG	3 cut(s)	6, 171, 803
AluBI	AGCT	7 cut(s)	137, 328, 402, 428, 550, 658, 685
AluI	AGCT	7 cut(s)	137, 328, 402, 428, 550, 658, 685
Alw21I	GWGCWC	2 cut(s)	245, 660
Alw26I	GTCTC	1 cut(s)	371
Alw44I	GTGCAC	1 cut(s)	241
AlwI	GGATC	1 cut(s)	113
AoxI	GGCC	3 cut(s)	9, 753, 796
ApaI	GGGCCC	1 cut(s)	757
ApaLI	GTGCAC	1 cut(s)	241
ApeKI	GCWGC	6 cut(s)	86, 377, 402, 579, 674, 685
ApoI	RAATTY	1 cut(s)	623
AspLEI	GCGC	2 cut(s)	748, 791
AspS9I	GGNCC	4 cut(s)	4, 292, 753, 754
AsuHPI	GGTGA	5 cut(s)	361, 532, 547, 659, 759
AvaII	GGWCC	2 cut(s)	4, 292
BaeGI	GKGCMC	2 cut(s)	245, 757
BanII	GRGCYC	3 cut(s)	51, 660, 757
Bbv12I	GWGCWC	2 cut(s)	245, 660
BbvCI	CCTCAGC	1 cut(s)	207
BbvI	GCAGC	6 cut(s)	73, 364, 389, 566, 661, 672
BccI	CCATC	1 cut(s)	776
BceAI	ACGGC	1 cut(s)	373
BciT130I	CCWGG	3 cut(s)	8, 173, 805
BcoDI	GTCTC	1 cut(s)	371
BfaI	CTAG	4 cut(s)	44, 134, 689, 813
BisI	GCNGC	7 cut(s)	87, 378, 403, 580, 675, 686, 744
BlsI	GCNGC	7 cut(s)	88, 379, 404, 581, 676, 687, 745
Bme1390I	CCNGG	3 cut(s)	8, 173, 805
Bme18I	GGWCC	2 cut(s)	4, 292
BmgT120I	GGNCC	4 cut(s)	4, 292, 753, 754
BmiI	GGNNCC	3 cut(s)	50, 754, 755
BmrFI	CCNGG	3 cut(s)	8, 173, 805
BmsI	GCATC	1 cut(s)	682
Bpu10I	CCTNAGC	1 cut(s)	207
Bsa29I	ATCGAT	1 cut(s)	609
BsaAI	YACGTR	1 cut(s)	101
BsaJI	CCNNGG	4 cut(s)	172, 259, 372, 381
Bsc4I	CCNNNNNNNGG	1 cut(s)	429
Bse1I	ACTGG	2 cut(s)	294, 580
Bse3DI	GCAATG	1 cut(s)	513
BseBI	CCWGG	3 cut(s)	8, 173, 805
BseCI	ATCGAT	1 cut(s)	609
BseDI	CCNNGG	4 cut(s)	172, 259, 372, 381
BseLI	CCNNNNNNNGG	1 cut(s)	429
BseMI	GCAATG	1 cut(s)	513
BseMII	CTCAG	2 cut(s)	198, 412
BseNI	ACTGG	2 cut(s)	294, 580
BseSI	GKGCMC	2 cut(s)	245, 757
BseXI	GCAGC	6 cut(s)	73, 364, 389, 566, 661, 672
BsgI	GTGCAG	1 cut(s)	72
Bsh1236I	CGCG	3 cut(s)	220, 748, 791
Bsh1285I	CGRYCG	1 cut(s)	364
BshFI	GGCC	3 cut(s)	11, 755, 798
BshVI	ATCGAT	1 cut(s)	609
BsiEI	CGRYCG	1 cut(s)	364
BsiHKAI	GWGCWC	2 cut(s)	245, 660
BsiSI	CCGG	1 cut(s)	795
BslFI	GGGAC	1 cut(s)	190
BslI	CCNNNNNNNGG	1 cut(s)	429
BsmAI	GTCTC	1 cut(s)	371
BsmBI	CGTCTC	1 cut(s)	371
BsmFI	GGGAC	1 cut(s)	190
BsmI	GAATGC	1 cut(s)	808
BsnI	GGCC	3 cut(s)	11, 755, 798
Bsp120I	GGGCCC	1 cut(s)	753
Bsp1286I	GDGCHC	4 cut(s)	51, 245, 660, 757
Bsp143I	GATC	4 cut(s)	105, 361, 471, 610
BspACI	CCGC	4 cut(s)	113, 295, 318, 743
BspANI	GGCC	3 cut(s)	11, 755, 798
BspCNI	CTCAG	2 cut(s)	199, 411
BspDI	ATCGAT	1 cut(s)	609
BspFNI	CGCG	3 cut(s)	220, 748, 791
BspLI	GGNNCC	3 cut(s)	50, 754, 755
BspPI	GGATC	1 cut(s)	113
BsrDI	GCAATG	1 cut(s)	513
BsrI	ACTGG	2 cut(s)	294, 580
BssECI	CCNNGG	4 cut(s)	172, 259, 372, 381
BssMI	GATC	4 cut(s)	105, 361, 471, 610
BssT1I	CCWWGG	2 cut(s)	372, 381
Bst2UI	CCWGG	3 cut(s)	8, 173, 805
Bst4CI	ACNGT	6 cut(s)	188, 247, 260, 439, 490, 516
Bst6I	CTCTTC	3 cut(s)	81, 231, 641
BstBAI	YACGTR	1 cut(s)	101
BstC8I	GCNNGC	3 cut(s)	218, 299, 478
BstDEI	CTNAG	2 cut(s)	207, 398
BstDSI	CCRYGG	1 cut(s)	259
BstFNI	CGCG	3 cut(s)	220, 748, 791
BstHHI	GCGC	2 cut(s)	748, 791
BstKTI	GATC	4 cut(s)	108, 364, 474, 613
BstMAI	GTCTC	1 cut(s)	371
BstMBI	GATC	4 cut(s)	105, 361, 471, 610
BstMCI	CGRYCG	1 cut(s)	364
BstMWI	GCNNNNNNNGC	2 cut(s)	752, 795
BstNI	CCWGG	3 cut(s)	8, 173, 805
BstSCI	CCNGG	3 cut(s)	6, 171, 803
BstSLI	GKGCMC	2 cut(s)	245, 757
BstSNI	TACGTA	1 cut(s)	101
BstUI	CGCG	3 cut(s)	220, 748, 791
BstV1I	GCAGC	6 cut(s)	73, 364, 389, 566, 661, 672
BstXI	CCANNNNNNTGG	1 cut(s)	388
Bsu15I	ATCGAT	1 cut(s)	609
BsuRI	GGCC	3 cut(s)	11, 755, 798
BsuTUI	ATCGAT	1 cut(s)	609
BtgI	CCRYGG	1 cut(s)	259
BtsIMutI	CAGTG	4 cut(s)	184, 435, 512, 574
Cac8I	GCNNGC	3 cut(s)	218, 299, 478
CfoI	GCGC	2 cut(s)	748, 791
Cfr13I	GGNCC	4 cut(s)	4, 292, 753, 754
ClaI	ATCGAT	1 cut(s)	609
CseI	GACGC	2 cut(s)	108, 780
Csp6I	GTAC	2 cut(s)	98, 433
CspCI	CAANNNNNGTGG	2 cut(s)	173, 208
CviAII	CATG	1 cut(s)	457
CviQI	GTAC	2 cut(s)	98, 433
DdeI	CTNAG	2 cut(s)	207, 398
DpnI	GATC	4 cut(s)	107, 363, 473, 612
DpnII	GATC	4 cut(s)	105, 361, 471, 610
DrdI	GACNNNNNNGTC	1 cut(s)	290
DseDI	GACNNNNNNGTC	1 cut(s)	290
EaeI	YGGCCR	1 cut(s)	796
Eam1104I	CTCTTC	3 cut(s)	81, 231, 641
EarI	CTCTTC	3 cut(s)	81, 231, 641
Ecl136II	GAGCTC	1 cut(s)	658
Eco105I	TACGTA	1 cut(s)	101
Eco130I	CCWWGG	2 cut(s)	372, 381
Eco24I	GRGCYC	3 cut(s)	51, 660, 757
Eco47I	GGWCC	2 cut(s)	4, 292
Eco53kI	GAGCTC	1 cut(s)	658
Eco57I	CTGAAG	2 cut(s)	551, 653
EcoICRI	GAGCTC	1 cut(s)	658
EcoO109I	RGGNCCY	1 cut(s)	753
EcoRII	CCWGG	3 cut(s)	6, 171, 803
EcoT14I	CCWWGG	2 cut(s)	372, 381
EcoT38I	GRGCYC	3 cut(s)	51, 660, 757
ErhI	CCWWGG	2 cut(s)	372, 381
Esp3I	CGTCTC	1 cut(s)	371
FaeI	CATG	1 cut(s)	460
FalI	AAGNNNNNCTT	2 cut(s)	121, 153
FaqI	GGGAC	1 cut(s)	190
FatI	CATG	1 cut(s)	456
FauI	CCCGC	1 cut(s)	325
Fnu4HI	GCNGC	7 cut(s)	87, 378, 403, 580, 675, 686, 744
FriOI	GRGCYC	3 cut(s)	51, 660, 757
Fsp4HI	GCNGC	7 cut(s)	87, 378, 403, 580, 675, 686, 744
FspBI	CTAG	4 cut(s)	44, 134, 689, 813
GlaI	GCGC	2 cut(s)	747, 790
GluI	GCNGC	7 cut(s)	87, 378, 403, 580, 675, 686, 744
HaeIII	GGCC	3 cut(s)	11, 755, 798
HapII	CCGG	1 cut(s)	795
HgaI	GACGC	2 cut(s)	108, 780
HhaI	GCGC	2 cut(s)	748, 791
Hin1II	CATG	1 cut(s)	460
Hin6I	GCGC	2 cut(s)	746, 789
HinP1I	GCGC	2 cut(s)	746, 789
HincII	GTYRAC	1 cut(s)	250
HindII	GTYRAC	1 cut(s)	250
HinfI	GANTC	3 cut(s)	222, 409, 453
HpaI	GTTAAC	1 cut(s)	250
HpaII	CCGG	1 cut(s)	795
HphI	GGTGA	5 cut(s)	361, 532, 547, 659, 759
Hpy166II	GTNNAC	4 cut(s)	143, 243, 250, 435
Hpy188I	TCNGA	1 cut(s)	452
Hpy188III	TCNNGA	2 cut(s)	226, 599
Hpy8I	GTNNAC	4 cut(s)	143, 243, 250, 435
Hpy99I	CGWCG	2 cut(s)	124, 308
HpyAV	CCTTC	3 cut(s)	496, 526, 532
HpyCH4III	ACNGT	6 cut(s)	188, 247, 260, 439, 490, 516
HpyCH4IV	ACGT	1 cut(s)	100
HpyCH4V	TGCA	2 cut(s)	89, 243
HpyF10VI	GCNNNNNNNGC	2 cut(s)	752, 795
HpyF3I	CTNAG	2 cut(s)	207, 398
HpySE526I	ACGT	1 cut(s)	100
Hsp92II	CATG	1 cut(s)	460
HspAI	GCGC	2 cut(s)	746, 789
KspAI	GTTAAC	1 cut(s)	250
Kzo9I	GATC	4 cut(s)	105, 361, 471, 610
LmnI	GCTCC	4 cut(s)	54, 391, 601, 663
Lsp1109I	GCAGC	6 cut(s)	73, 364, 389, 566, 661, 672
LweI	GCATC	1 cut(s)	682
MaeI	CTAG	4 cut(s)	44, 134, 689, 813
MaeII	ACGT	1 cut(s)	100
MaeIII	GTNAC	6 cut(s)	151, 484, 510, 647, 717, 765
MalI	GATC	4 cut(s)	107, 363, 473, 612
MboI	GATC	4 cut(s)	105, 361, 471, 610
MboII	GAAGA	7 cut(s)	68, 248, 334, 481, 620, 628, 700
MhlI	GDGCHC	4 cut(s)	51, 245, 660, 757
MluCI	AATT	2 cut(s)	618, 623
MlyI	GAGTC	1 cut(s)	403
MmeI	TCCRAC	1 cut(s)	104
MnlI	CCTC	4 cut(s)	66, 202, 344, 435
MseI	TTAA	2 cut(s)	249, 621
MspA1I	CMGCKG	1 cut(s)	402
MspI	CCGG	1 cut(s)	795
MspR9I	CCNGG	3 cut(s)	8, 173, 805
Mva1269I	GAATGC	1 cut(s)	808
MvaI	CCWGG	3 cut(s)	8, 173, 805
MvnI	CGCG	3 cut(s)	220, 748, 791
MwoI	GCNNNNNNNGC	2 cut(s)	752, 795
NdeII	GATC	4 cut(s)	105, 361, 471, 610
NlaIII	CATG	1 cut(s)	460
NlaIV	GGNNCC	3 cut(s)	50, 754, 755
NmuCI	GTSAC	4 cut(s)	151, 510, 647, 765
PctI	GAATGC	1 cut(s)	808
PfeI	GAWTC	2 cut(s)	222, 453
PkrI	GCNGC	7 cut(s)	88, 379, 404, 581, 676, 687, 745
Ple19I	CGATCG	1 cut(s)	364
PleI	GAGTC	1 cut(s)	403
PpsI	GAGTC	1 cut(s)	403
Ppu21I	YACGTR	1 cut(s)	101
Psp124BI	GAGCTC	1 cut(s)	660
Psp6I	CCWGG	3 cut(s)	6, 171, 803
PspGI	CCWGG	3 cut(s)	6, 171, 803
PspN4I	GGNNCC	3 cut(s)	50, 754, 755
PspOMI	GGGCCC	1 cut(s)	753
PspPI	GGNCC	4 cut(s)	4, 292, 753, 754
PvuI	CGATCG	1 cut(s)	364
PvuII	CAGCTG	1 cut(s)	402
RsaI	GTAC	2 cut(s)	99, 434
RsaNI	GTAC	2 cut(s)	98, 433
SacI	GAGCTC	1 cut(s)	660
SaqAI	TTAA	2 cut(s)	249, 621
SatI	GCNGC	7 cut(s)	87, 378, 403, 580, 675, 686, 744
Sau3AI	GATC	4 cut(s)	105, 361, 471, 610
Sau96I	GGNCC	4 cut(s)	4, 292, 753, 754
SchI	GAGTC	1 cut(s)	403
ScrFI	CCNGG	3 cut(s)	8, 173, 805
SduI	GDGCHC	4 cut(s)	51, 245, 660, 757
SfaNI	GCATC	1 cut(s)	682
SinI	GGWCC	2 cut(s)	4, 292
SnaBI	TACGTA	1 cut(s)	101
Sse9I	AATT	2 cut(s)	618, 623
SsiI	CCGC	4 cut(s)	113, 295, 318, 743
SspMI	CTAG	4 cut(s)	44, 134, 689, 813
SstI	GAGCTC	1 cut(s)	660
StyD4I	CCNGG	3 cut(s)	6, 171, 803
StyI	CCWWGG	2 cut(s)	372, 381
TaaI	ACNGT	6 cut(s)	188, 247, 260, 439, 490, 516
TaiI	ACGT	1 cut(s)	103
TaqI	TCGA	3 cut(s)	306, 609, 822
TasI	AATT	2 cut(s)	618, 623
TauI	GCSGC	1 cut(s)	746
TfiI	GAWTC	2 cut(s)	222, 453
Tru1I	TTAA	2 cut(s)	249, 621
Tru9I	TTAA	2 cut(s)	249, 621
TscAI	CASTG	4 cut(s)	191, 442, 519, 574
TseFI	GTSAC	4 cut(s)	151, 510, 647, 765
TseI	GCWGC	6 cut(s)	86, 377, 402, 579, 674, 685
Tsp45I	GTSAC	4 cut(s)	151, 510, 647, 765
TspGWI	ACGGA	1 cut(s)	137
TspRI	CASTG	4 cut(s)	191, 442, 519, 574
VneI	GTGCAC	1 cut(s)	241
VpaK11BI	GGWCC	2 cut(s)	4, 292
XapI	RAATTY	1 cut(s)	623
XspI	CTAG	4 cut(s)	44, 134, 689, 813

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.