Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003629.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

29510 .. 31695

Gene Structure 2186 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

atggtggagaagggtcgtttgcctggtcttgatgctatattggagggtgtggctatacaagttcttgctatggctgaattggccgaatcttttactaggaagagactgcgcaaccgttgggttggaacttggaagtgtctattccctcctcctcctcctcctcctcctattagggttcttacctctctctccgcccctctcgcggcaacaactttaaaagccctaatggcttcggagaagaagttagcgaaccctatgagggaaatcaaggtccagaagctggtcctcaacatctctgtaggcgagagcggtgatcgactcaccagagccgcgaaggtgttggagcaactcagtggccaaacccctgttttttccaaagcaaggtacactgttcggagctttggcatcaggcgtaatgagaagattgcctgctacgtcactgtcaggggtgaaaaggccatgtcacttctggagagtgggttgaaggtcaaggaatacgagttgctccgaaagaactttagtgatactggttgctttggctttggtatccaggagcacatcgatctgggaatcaagtatgatccttctactggtatttatggaatggatttctatgttgttttggagcgccccggttatcgtgtgggtcgtcgtcgtagatgcaagtctcgtgttgggatccagcacagggtcacgaaggaggattccatgaagtggttccaggtcaagtatgagggtgtgatccttaacaagtcccagcaaatctcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L5 Ribosomal_L5_C

Protein Analysis

256

Amino Acids

28.87

Weight (kDa)

10.04

Isoelectric Point (pI)

42.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L5	PF00281	84 - 137	3.6e-21	Ribosomal protein L5
Ribosomal_L5_C	PF00673	141 - 239	2.9e-18	ribosomal L5P family C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	110
AccB7I	CCANNNNNTGG	2 cut(s)	280, 714
AccBSI	CCGCTC	1 cut(s)	309
AccII	CGCG	2 cut(s)	203, 332
AciI	CCGC	4 cut(s)	192, 203, 309, 330
AclWI	GGATC	4 cut(s)	575, 673, 686, 736
AcoI	YGGCCR	2 cut(s)	81, 355
AfaI	GTAC	1 cut(s)	386
AfiI	CCNNNNNNNGG	7 cut(s)	202, 259, 280, 381, 590, 688, 714
AgsI	TTSAA	1 cut(s)	484
AjnI	CCWGG	3 cut(s)	22, 549, 720
AluBI	AGCT	2 cut(s)	280, 399
AluI	AGCT	2 cut(s)	280, 399
Alw21I	GWGCWC	1 cut(s)	558
Alw26I	GTCTC	2 cut(s)	97, 672
AlwI	GGATC	4 cut(s)	575, 673, 686, 736
AlwNI	CAGNNNCTG	1 cut(s)	280
AoxI	GGCC	3 cut(s)	81, 355, 456
Asp700I	GAANNNNTTC	1 cut(s)	716
AspLEI	GCGC	2 cut(s)	111, 630
AspS9I	GGNCC	2 cut(s)	271, 283
AsuC2I	CCSGG	1 cut(s)	633
AsuHPI	GGTGA	3 cut(s)	313, 323, 461
AvaII	GGWCC	2 cut(s)	271, 283
BalI	TGGCCA	1 cut(s)	357
BamHI	GGATCC	1 cut(s)	678
BauI	CACGAG	1 cut(s)	669
Bbv12I	GWGCWC	1 cut(s)	558
BciT130I	CCWGG	3 cut(s)	24, 551, 722
BciVI	GTATCC	1 cut(s)	557
BcnI	CCSGG	1 cut(s)	633
BcoDI	GTCTC	2 cut(s)	97, 672
BfaI	CTAG	1 cut(s)	96
BfmI	CTRYAG	1 cut(s)	297
BfoI	RGCGCY	1 cut(s)	631
BfuI	GTATCC	1 cut(s)	557
BglI	GCCNNNNNGGC	1 cut(s)	227
BisI	GCNGC	2 cut(s)	204, 330
BlsI	GCNGC	2 cut(s)	205, 331
Bme1390I	CCNGG	4 cut(s)	24, 551, 633, 722
Bme18I	GGWCC	2 cut(s)	271, 283
BmgT120I	GGNCC	2 cut(s)	271, 283
BmiI	GGNNCC	2 cut(s)	680, 719
BmrFI	CCNGG	4 cut(s)	24, 551, 633, 722
BmsI	GCATC	3 cut(s)	22, 414, 650
BpmI	CTGGAG	1 cut(s)	491
BpuMI	CCSGG	1 cut(s)	633
Bsa29I	ATCGAT	1 cut(s)	561
BsaJI	CCNNGG	1 cut(s)	631
BsaXI	ACNNNNNCTCC	4 cut(s)	227, 257, 464, 494
Bsc4I	CCNNNNNNNGG	7 cut(s)	202, 259, 280, 381, 590, 688, 714
Bse1I	ACTGG	2 cut(s)	532, 595
BseBI	CCWGG	3 cut(s)	24, 551, 722
BseCI	ATCGAT	1 cut(s)	561
BseDI	CCNNGG	1 cut(s)	631
BseLI	CCNNNNNNNGG	7 cut(s)	202, 259, 280, 381, 590, 688, 714
BseMII	CTCAG	1 cut(s)	364
BseNI	ACTGG	2 cut(s)	532, 595
BseRI	GAGGAG	6 cut(s)	138, 141, 144, 147, 150, 153
BseYI	CCCAGC	1 cut(s)	756
Bsh1236I	CGCG	2 cut(s)	203, 332
BshFI	GGCC	3 cut(s)	83, 357, 458
BshVI	ATCGAT	1 cut(s)	561
BsiHKAI	GWGCWC	1 cut(s)	558
BsiSI	CCGG	1 cut(s)	633
BslFI	GGGAC	1 cut(s)	739
BslI	CCNNNNNNNGG	7 cut(s)	202, 259, 280, 381, 590, 688, 714
BsmAI	GTCTC	2 cut(s)	97, 672
BsmFI	GGGAC	1 cut(s)	739
BsnI	GGCC	3 cut(s)	83, 357, 458
Bsp1286I	GDGCHC	1 cut(s)	558
Bsp143I	GATC	5 cut(s)	313, 562, 580, 678, 741
BspACI	CCGC	4 cut(s)	192, 203, 309, 330
BspANI	GGCC	3 cut(s)	83, 357, 458
BspCNI	CTCAG	1 cut(s)	363
BspDI	ATCGAT	1 cut(s)	561
BspFNI	CGCG	2 cut(s)	203, 332
BspLI	GGNNCC	2 cut(s)	680, 719
BspPI	GGATC	4 cut(s)	575, 673, 686, 736
BsrBI	CCGCTC	1 cut(s)	309
BsrI	ACTGG	2 cut(s)	532, 595
BssECI	CCNNGG	1 cut(s)	631
BssMI	GATC	5 cut(s)	313, 562, 580, 678, 741
BssSI	CACGAG	1 cut(s)	669
Bst2BI	CACGAG	1 cut(s)	669
Bst2UI	CCWGG	3 cut(s)	24, 551, 722
Bst4CI	ACNGT	3 cut(s)	116, 391, 442
Bst6I	CTCTTC	1 cut(s)	95
BstC8I	GCNNGC	1 cut(s)	430
BstDEI	CTNAG	2 cut(s)	350, 768
BstFNI	CGCG	2 cut(s)	203, 332
BstH2I	RGCGCY	1 cut(s)	631
BstHHI	GCGC	2 cut(s)	111, 630
BstKTI	GATC	5 cut(s)	316, 565, 583, 681, 744
BstMAI	GTCTC	2 cut(s)	97, 672
BstMBI	GATC	5 cut(s)	313, 562, 580, 678, 741
BstMWI	GCNNNNNNNGC	3 cut(s)	80, 200, 227
BstNI	CCWGG	3 cut(s)	24, 551, 722
BstSCI	CCNGG	4 cut(s)	22, 549, 631, 720
BstSFI	CTRYAG	1 cut(s)	297
BstUI	CGCG	2 cut(s)	203, 332
BstX2I	RGATCY	1 cut(s)	678
BstYI	RGATCY	1 cut(s)	678
Bsu15I	ATCGAT	1 cut(s)	561
BsuI	GTATCC	1 cut(s)	557
BsuRI	GGCC	3 cut(s)	83, 357, 458
BsuTUI	ATCGAT	1 cut(s)	561
BtsIMutI	CAGTG	3 cut(s)	358, 387, 438
Cac8I	GCNNGC	1 cut(s)	430
CaiI	CAGNNNCTG	1 cut(s)	280
CfoI	GCGC	2 cut(s)	111, 630
Cfr13I	GGNCC	2 cut(s)	271, 283
ClaI	ATCGAT	1 cut(s)	561
Csp6I	GTAC	1 cut(s)	385
CviAII	CATG	2 cut(s)	460, 709
CviQI	GTAC	1 cut(s)	385
DdeI	CTNAG	2 cut(s)	350, 768
DpnI	GATC	5 cut(s)	315, 564, 582, 680, 743
DpnII	GATC	5 cut(s)	313, 562, 580, 678, 741
DraI	TTTAAA	1 cut(s)	216
EaeI	YGGCCR	2 cut(s)	81, 355
Eam1104I	CTCTTC	1 cut(s)	95
EarI	CTCTTC	1 cut(s)	95
EciI	GGCGGA	1 cut(s)	181
Eco47I	GGWCC	2 cut(s)	271, 283
EcoRII	CCWGG	3 cut(s)	22, 549, 720
FaeI	CATG	2 cut(s)	463, 712
FaqI	GGGAC	1 cut(s)	739
FatI	CATG	2 cut(s)	459, 708
Fnu4HI	GCNGC	2 cut(s)	204, 330
Fsp4HI	GCNGC	2 cut(s)	204, 330
FspBI	CTAG	1 cut(s)	96
FspI	TGCGCA	1 cut(s)	110
GlaI	GCGC	2 cut(s)	110, 629
GluI	GCNGC	2 cut(s)	204, 330
GsaI	CCCAGC	1 cut(s)	760
GsuI	CTGGAG	1 cut(s)	491
HaeII	RGCGCY	1 cut(s)	631
HaeIII	GGCC	3 cut(s)	83, 357, 458
HapII	CCGG	1 cut(s)	633
HhaI	GCGC	2 cut(s)	111, 630
Hin1II	CATG	2 cut(s)	463, 712
Hin6I	GCGC	2 cut(s)	109, 628
HinP1I	GCGC	2 cut(s)	109, 628
HinfI	GANTC	4 cut(s)	86, 318, 570, 704
HpaII	CCGG	1 cut(s)	633
HphI	GGTGA	3 cut(s)	313, 323, 461
Hpy166II	GTNNAC	1 cut(s)	387
Hpy188I	TCNGA	3 cut(s)	235, 396, 509
Hpy188III	TCNNGA	4 cut(s)	29, 274, 470, 694
Hpy8I	GTNNAC	1 cut(s)	387
Hpy99I	CGWCG	2 cut(s)	654, 657
HpyAV	CCTTC	5 cut(s)	4, 328, 478, 594, 691
HpyCH4III	ACNGT	3 cut(s)	116, 391, 442
HpyCH4IV	ACGT	1 cut(s)	435
HpyCH4V	TGCA	1 cut(s)	663
HpyF10VI	GCNNNNNNNGC	3 cut(s)	80, 200, 227
HpyF3I	CTNAG	2 cut(s)	350, 768
HpySE526I	ACGT	1 cut(s)	435
Hsp92II	CATG	2 cut(s)	463, 712
HspAI	GCGC	2 cut(s)	109, 628
Kzo9I	GATC	5 cut(s)	313, 562, 580, 678, 741
LmnI	GCTCC	5 cut(s)	343, 396, 510, 553, 625
LweI	GCATC	3 cut(s)	22, 414, 650
MaeI	CTAG	1 cut(s)	96
MaeII	ACGT	1 cut(s)	435
MaeIII	GTNAC	3 cut(s)	436, 462, 691
MalI	GATC	5 cut(s)	315, 564, 582, 680, 743
MbiI	CCGCTC	1 cut(s)	309
MboI	GATC	5 cut(s)	313, 562, 580, 678, 741
MboII	GAAGA	3 cut(s)	112, 250, 433
MflI	RGATCY	1 cut(s)	678
MhlI	GDGCHC	1 cut(s)	558
MlsI	TGGCCA	1 cut(s)	357
MluCI	AATT	1 cut(s)	77
MluNI	TGGCCA	1 cut(s)	357
MlyI	GAGTC	1 cut(s)	312
MmeI	TCCRAC	2 cut(s)	103, 321
Mox20I	TGGCCA	1 cut(s)	357
MroXI	GAANNNNTTC	1 cut(s)	716
MscI	TGGCCA	1 cut(s)	357
MseI	TTAA	2 cut(s)	215, 747
Msp20I	TGGCCA	1 cut(s)	357
MspI	CCGG	1 cut(s)	633
MspR9I	CCNGG	4 cut(s)	24, 551, 633, 722
MvaI	CCWGG	3 cut(s)	24, 551, 722
MvnI	CGCG	2 cut(s)	203, 332
MwoI	GCNNNNNNNGC	3 cut(s)	80, 200, 227
NciI	CCSGG	1 cut(s)	633
NdeII	GATC	5 cut(s)	313, 562, 580, 678, 741
NlaIII	CATG	2 cut(s)	463, 712
NlaIV	GGNNCC	2 cut(s)	680, 719
NmuCI	GTSAC	3 cut(s)	436, 462, 691
NsbI	TGCGCA	1 cut(s)	110
PcsI	WCGNNNNNNNCGW	1 cut(s)	646
PdmI	GAANNNNTTC	1 cut(s)	716
PfeI	GAWTC	3 cut(s)	86, 570, 704
PflMI	CCANNNNNTGG	2 cut(s)	280, 714
PfoI	TCCNGGA	1 cut(s)	549
PkrI	GCNGC	2 cut(s)	205, 331
PleI	GAGTC	1 cut(s)	312
PpsI	GAGTC	1 cut(s)	312
Psp6I	CCWGG	3 cut(s)	22, 549, 720
PspFI	CCCAGC	1 cut(s)	756
PspGI	CCWGG	3 cut(s)	22, 549, 720
PspN4I	GGNNCC	2 cut(s)	680, 719
PspPI	GGNCC	2 cut(s)	271, 283
PstNI	CAGNNNCTG	1 cut(s)	280
PsuI	RGATCY	1 cut(s)	678
RsaI	GTAC	1 cut(s)	386
RsaNI	GTAC	1 cut(s)	385
SaqAI	TTAA	2 cut(s)	215, 747
SatI	GCNGC	2 cut(s)	204, 330
Sau3AI	GATC	5 cut(s)	313, 562, 580, 678, 741
Sau96I	GGNCC	2 cut(s)	271, 283
SchI	GAGTC	1 cut(s)	312
ScrFI	CCNGG	4 cut(s)	24, 551, 633, 722
SduI	GDGCHC	1 cut(s)	558
SetI	ASST	9 cut(s)	185, 273, 282, 339, 386, 401, 438, 489, 726
SfaNI	GCATC	3 cut(s)	22, 414, 650
SfcI	CTRYAG	1 cut(s)	297
SinI	GGWCC	2 cut(s)	271, 283
Sse9I	AATT	1 cut(s)	77
SsiI	CCGC	4 cut(s)	192, 203, 309, 330
SspMI	CTAG	1 cut(s)	96
StyD4I	CCNGG	4 cut(s)	22, 549, 631, 720
TaaI	ACNGT	3 cut(s)	116, 391, 442
TaiI	ACGT	1 cut(s)	438
TaqI	TCGA	2 cut(s)	316, 561
TasI	AATT	1 cut(s)	77
TauI	GCSGC	2 cut(s)	206, 332
TfiI	GAWTC	3 cut(s)	86, 570, 704
Tru1I	TTAA	2 cut(s)	215, 747
Tru9I	TTAA	2 cut(s)	215, 747
TscAI	CASTG	3 cut(s)	358, 394, 445
TseFI	GTSAC	3 cut(s)	436, 462, 691
Tsp45I	GTSAC	3 cut(s)	436, 462, 691
TspDTI	ATGAA	1 cut(s)	725
TspRI	CASTG	3 cut(s)	358, 394, 445
Van91I	CCANNNNNTGG	2 cut(s)	280, 714
VpaK11BI	GGWCC	2 cut(s)	271, 283
XcmI	CCANNNNNNNNNTGG	1 cut(s)	466
XmnI	GAANNNNTTC	1 cut(s)	716
XspI	CTAG	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.