Rmu_sc0003633.1_g000036

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003633.1
N/A
Physical Location & Seq
Forward (+)
124758 .. 127709
2952 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 594 bp
atggagggtaagaagaaaggctacgcttgggcggtctccgccggactaaacgcagctctggctgccgtttcggcgaagctgattactcctcagattttgaggtatggaatggtggttttattcaacgtgacaatgtgggggtgttatgtgaacagccttaaaactctgtcatctctacaagctacggttactaattttgctgcgaatttcctctcttctggtttagctggttacttcttgttccaagagcccttgtcctttaagtggtttgtaggtgccatgctcattgtagttggttcactcgtacttagtgacgagacattccgtcgtcgtgaagtaaaagcccgcccgggtttccctcagctctctggtaagtgttccgatttccttctacatccctcttcttacatggcggactccgagcatttcttgattacgtatcagtctctcgattatatgaccacaatcggtcttggtttgtatgtggttttaggggttggttttggaattggtttggtgttggtcaaaattgagtttggtggcggttgttgctttagtgttactgtggacgggattggagattttgaattttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EamA

Protein Analysis

197

Amino Acids

21.37

Weight (kDa)

7.63

Isoelectric Point (pI)

27.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 275
AciI CCGC 5 cut(s) 32, 39, 346, 413, 543
AcsI RAATTY 2 cut(s) 205, 587
AfaI GTAC 1 cut(s) 306
AfiI CCNNNNNNNGG 1 cut(s) 264
AgsI TTSAA 2 cut(s) 124, 587
AhdI GACNNNNNGTC 1 cut(s) 324
AluBI AGCT 5 cut(s) 56, 79, 182, 227, 364
AluI AGCT 5 cut(s) 56, 79, 182, 227, 364
Alw26I GTCTC 3 cut(s) 40, 311, 450
Ama87I CYCGRG 1 cut(s) 349
ApeKI GCWGC 3 cut(s) 53, 62, 200
ApoI RAATTY 2 cut(s) 205, 587
AsuC2I CCSGG 2 cut(s) 350, 351
AvaI CYCGRG 1 cut(s) 349
BanI GGYRCC 1 cut(s) 275
BanII GRGCYC 1 cut(s) 252
BarI GAAGNNNNNNTAC 1 cut(s) 37
BbvCI CCTCAGC 1 cut(s) 360
BbvI GCAGC 3 cut(s) 49, 65, 187
BceAI ACGGC 1 cut(s) 50
BcnI CCSGG 2 cut(s) 350, 351
BcoDI GTCTC 3 cut(s) 40, 311, 450
BglI GCCNNNNNGGC 1 cut(s) 71
BisI GCNGC 3 cut(s) 54, 63, 201
BlsI GCNGC 3 cut(s) 55, 64, 202
Bme1390I CCNGG 2 cut(s) 350, 351
BmeRI GACNNNNNGTC 1 cut(s) 324
BmeT110I CYCGRG 1 cut(s) 349
BmiI GGNNCC 1 cut(s) 277
BmrFI CCNGG 2 cut(s) 350, 351
Bpu10I CCTNAGC 1 cut(s) 360
BpuMI CCSGG 2 cut(s) 350, 351
BsaAI YACGTR 1 cut(s) 438
BsaI GGTCTC 1 cut(s) 40
BsaJI CCNNGG 1 cut(s) 349
Bsc4I CCNNNNNNNGG 1 cut(s) 264
BseDI CCNNGG 1 cut(s) 349
BseGI GGATG 1 cut(s) 394
BseLI CCNNNNNNNGG 1 cut(s) 264
BseMII CTCAG 2 cut(s) 104, 374
BseRI GAGGAG 1 cut(s) 78
BseXI GCAGC 3 cut(s) 49, 65, 187
BshNI GGYRCC 1 cut(s) 275
BsiHKCI CYCGRG 1 cut(s) 349
BsiSI CCGG 2 cut(s) 42, 350
BslI CCNNNNNNNGG 1 cut(s) 264
BsmAI GTCTC 3 cut(s) 40, 311, 450
Bso31I GGTCTC 1 cut(s) 40
BsoBI CYCGRG 1 cut(s) 349
Bsp1286I GDGCHC 1 cut(s) 252
BspACI CCGC 5 cut(s) 32, 39, 346, 413, 543
BspCNI CTCAG 2 cut(s) 103, 373
BspLI GGNNCC 1 cut(s) 277
BspT107I GGYRCC 1 cut(s) 275
BspTNI GGTCTC 1 cut(s) 40
BssECI CCNNGG 1 cut(s) 349
Bst4CI ACNGT 2 cut(s) 187, 565
Bst6I CTCTTC 2 cut(s) 220, 406
BstBAI YACGTR 1 cut(s) 438
BstC8I GCNNGC 1 cut(s) 346
BstDEI CTNAG 3 cut(s) 90, 308, 360
BstF5I GGATG 1 cut(s) 394
BstMAI GTCTC 3 cut(s) 40, 311, 450
BstMWI GCNNNNNNNGC 5 cut(s) 38, 59, 62, 71, 549
BstSCI CCNGG 2 cut(s) 348, 349
BstSNI TACGTA 1 cut(s) 438
BstV1I GCAGC 3 cut(s) 49, 65, 187
BtsCI GGATG 1 cut(s) 394
Cac8I GCNNGC 1 cut(s) 346
Cfr9I CCCGGG 1 cut(s) 349
Csp6I GTAC 1 cut(s) 305
CviAII CATG 2 cut(s) 280, 409
CviQI GTAC 1 cut(s) 305
DdeI CTNAG 3 cut(s) 90, 308, 360
DriI GACNNNNNGTC 1 cut(s) 324
Eam1104I CTCTTC 2 cut(s) 220, 406
Eam1105I GACNNNNNGTC 1 cut(s) 324
EarI CTCTTC 2 cut(s) 220, 406
EciI GGCGGA 2 cut(s) 28, 428
Eco105I TACGTA 1 cut(s) 438
Eco24I GRGCYC 1 cut(s) 252
Eco31I GGTCTC 1 cut(s) 40
Eco88I CYCGRG 1 cut(s) 349
EcoT38I GRGCYC 1 cut(s) 252
FaeI CATG 2 cut(s) 283, 412
FaiI YATR 7 cut(s) 105, 147, 281, 410, 456, 458, 483
FatI CATG 2 cut(s) 279, 408
FauI CCCGC 1 cut(s) 353
Fnu4HI GCNGC 3 cut(s) 54, 63, 201
FokI GGATG 1 cut(s) 381
FriOI GRGCYC 1 cut(s) 252
Fsp4HI GCNGC 3 cut(s) 54, 63, 201
GluI GCNGC 3 cut(s) 54, 63, 201
HapII CCGG 2 cut(s) 42, 350
Hin1II CATG 2 cut(s) 283, 412
HinfI GANTC 1 cut(s) 416
HpaII CCGG 2 cut(s) 42, 350
Hpy166II GTNNAC 3 cut(s) 151, 299, 568
Hpy188I TCNGA 3 cut(s) 93, 382, 421
Hpy188III TCNNGA 3 cut(s) 332, 430, 449
Hpy8I GTNNAC 3 cut(s) 151, 299, 568
Hpy99I CGWCG 2 cut(s) 330, 333
HpyAV CCTTC 1 cut(s) 398
HpyCH4III ACNGT 2 cut(s) 187, 565
HpyCH4IV ACGT 2 cut(s) 126, 437
HpyF10VI GCNNNNNNNGC 5 cut(s) 38, 59, 62, 71, 549
HpyF3I CTNAG 3 cut(s) 90, 308, 360
HpySE526I ACGT 2 cut(s) 126, 437
Hsp92II CATG 2 cut(s) 283, 412
LpnPI CCDG 6 cut(s) 44, 55, 204, 213, 354, 363
Lsp1109I GCAGC 3 cut(s) 49, 65, 187
MaeII ACGT 2 cut(s) 126, 437
MaeIII GTNAC 5 cut(s) 127, 187, 230, 311, 559
MboII GAAGA 3 cut(s) 25, 207, 393
MhlI GDGCHC 1 cut(s) 252
MluCI AATT 5 cut(s) 193, 205, 507, 528, 587
MlyI GAGTC 1 cut(s) 410
MnlI CCTC 5 cut(s) 93, 99, 221, 369, 409
MseI TTAA 2 cut(s) 159, 261
MspI CCGG 2 cut(s) 42, 350
MspR9I CCNGG 2 cut(s) 350, 351
MwoI GCNNNNNNNGC 5 cut(s) 38, 59, 62, 71, 549
NciI CCSGG 2 cut(s) 350, 351
NlaIII CATG 2 cut(s) 283, 412
NlaIV GGNNCC 1 cut(s) 277
NmuCI GTSAC 2 cut(s) 127, 311
PkrI GCNGC 3 cut(s) 55, 64, 202
PleI GAGTC 1 cut(s) 410
PpsI GAGTC 1 cut(s) 410
Ppu21I YACGTR 1 cut(s) 438
PspN4I GGNNCC 1 cut(s) 277
RsaI GTAC 1 cut(s) 306
RsaNI GTAC 1 cut(s) 305
SaqAI TTAA 2 cut(s) 159, 261
SatI GCNGC 3 cut(s) 54, 63, 201
SchI GAGTC 1 cut(s) 410
ScrFI CCNGG 2 cut(s) 350, 351
SduI GDGCHC 1 cut(s) 252
SetI ASST 9 cut(s) 58, 81, 104, 129, 184, 229, 277, 366, 440
SmaI CCCGGG 1 cut(s) 351
SnaBI TACGTA 1 cut(s) 438
Sse9I AATT 5 cut(s) 193, 205, 507, 528, 587
SsiI CCGC 5 cut(s) 32, 39, 346, 413, 543
StyD4I CCNGG 2 cut(s) 348, 349
TaaI ACNGT 2 cut(s) 187, 565
TaiI ACGT 2 cut(s) 129, 440
TaqI TCGA 1 cut(s) 450
TaqII GACCGA 1 cut(s) 458
TasI AATT 5 cut(s) 193, 205, 507, 528, 587
Tru1I TTAA 2 cut(s) 159, 261
Tru9I TTAA 2 cut(s) 159, 261
TseFI GTSAC 2 cut(s) 127, 311
TseI GCWGC 3 cut(s) 53, 62, 200
Tsp45I GTSAC 2 cut(s) 127, 311
TspGWI ACGGA 1 cut(s) 314
TspMI CCCGGG 1 cut(s) 349
XapI RAATTY 2 cut(s) 205, 587
XmaI CCCGGG 1 cut(s) 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.