Rmu_sc0003649.1_g000030

Prohibitin-3

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003649.1
N/A
Physical Location & Seq
Forward (+)
146431 .. 148372
1942 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 795 bp
atgggaagcaaccaagccgccgtgtccttcctcaccaacctcgcacgcgccgccttcggcctcggcgccggcgctaccatcgtcaactcggccctgtacaccgtcgacggcggccagcgcgccgtcctcttcgaccgtttccgcggcgtcatcgacgagaccgtcggcgaaggcacccacttcctggtcccgtggctgcagaagccctacatcttcgacatcaggacccgcccccacaccttctcctccatctccggcaccaaggatcttcagatggtcaacctcactctgagggttctctcccgcccggaggtcagtcgcctccctcagatcttcaaaaccctggggctcgagtacgacgagaaggtcctcccgtcgatcgggaacgaggttctcaaggcggtggtggcgcagttcaacgccgatcagctcctgacggagcggccgcacgtgtcggcgctggtgcgggagagcttgatccgcagggctaaggatttcaacattgagctggacgacgtggccatcacgcacttgtcgtacggggcggagttctcacgcgccgtcgagcagaagcaggtggcgcagcaggaggcggagcggtccaagtttgttgtggcgaaggcggagcaggagaggagggctgctattatcagggctcagggattgaagctagtagagagattgccgccacgctcgccaagtcgcccaatgtcaactacctgcctaaggggaaccaggtcctcttcggcctcggtggtggtcgttgaagggtctcaagaagcagcacaagcatga

Protein Analysis

264

Amino Acids

29.02

Weight (kDa)

9.47

Isoelectric Point (pI)

44.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Band_7 PF01145 34 - 211 3.3e-29 SPFH domain / Band 7 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 565
AasI GACNNNNNNGTC 2 cut(s) 161, 365
Acc36I ACCTGC 2 cut(s) 565, 728
AccB1I GGYRCC 3 cut(s) 65, 173, 257
AccB7I CCANNNNNTGG 1 cut(s) 184
AccBSI CCGCTC 2 cut(s) 442, 598
AccI GTMKAC 1 cut(s) 105
AccII CGCG 4 cut(s) 48, 120, 144, 558
AclWI GGATC 2 cut(s) 273, 472
AcoI YGGCCR 3 cut(s) 112, 443, 519
AcuI CTGAAG 1 cut(s) 254
AcvI CACGTG 1 cut(s) 451
AcyI GRCGYC 2 cut(s) 66, 147
AfaI GTAC 3 cut(s) 98, 356, 539
AfiI CCNNNNNNNGG 4 cut(s) 184, 310, 380, 726
AflIII ACRYGT 1 cut(s) 450
AgsI TTSAA 5 cut(s) 337, 418, 499, 667, 767
AjiI CACGTC 1 cut(s) 517
AjnI CCWGG 3 cut(s) 183, 342, 734
AluBI AGCT 4 cut(s) 430, 474, 508, 670
AluI AGCT 4 cut(s) 430, 474, 508, 670
Alw26I GTCTC 2 cut(s) 152, 777
AlwI GGATC 2 cut(s) 273, 472
AlwNI CAGNNNCTG 1 cut(s) 433
Ama87I CYCGRG 1 cut(s) 350
AoxI GGCC 6 cut(s) 58, 90, 112, 443, 519, 747
ApeKI GCWGC 4 cut(s) 196, 583, 641, 782
AspLEI GCGC 9 cut(s) 50, 68, 74, 120, 122, 412, 460, 560, 583
AspS9I GGNCC 6 cut(s) 91, 187, 225, 367, 600, 738
AsuC2I CCSGG 1 cut(s) 308
AsuHPI GGTGA 1 cut(s) 25
AvaI CYCGRG 1 cut(s) 350
AvaII GGWCC 5 cut(s) 187, 225, 367, 600, 738
AxyI CCTNAGG 1 cut(s) 725
BalI TGGCCA 1 cut(s) 521
BanI GGYRCC 3 cut(s) 65, 173, 257
BanII GRGCYC 2 cut(s) 351, 658
BbrPI CACGTG 1 cut(s) 451
BbvI GCAGC 3 cut(s) 183, 595, 628
BccI CCATC 4 cut(s) 86, 257, 268, 530
BceAI ACGGC 4 cut(s) 5, 107, 124, 545
BciT130I CCWGG 3 cut(s) 185, 344, 736
BcnI CCSGG 1 cut(s) 308
BcoDI GTCTC 2 cut(s) 152, 777
BfaI CTAG 1 cut(s) 671
BfmI CTRYAG 1 cut(s) 197
BfoI RGCGCY 3 cut(s) 69, 75, 461
BfuAI ACCTGC 2 cut(s) 565, 728
BglII AGATCT 1 cut(s) 330
Bme1390I CCNGG 4 cut(s) 185, 308, 344, 736
Bme18I GGWCC 5 cut(s) 187, 225, 367, 600, 738
BmeT110I CYCGRG 1 cut(s) 350
BmgBI CACGTC 1 cut(s) 517
BmgT120I GGNCC 6 cut(s) 91, 187, 225, 367, 600, 738
BmiI GGNNCC 6 cut(s) 67, 175, 189, 227, 259, 733
BmrFI CCNGG 4 cut(s) 185, 308, 344, 736
Bpu10I CCTNAGC 2 cut(s) 489, 657
BpuEI CTTGAG 2 cut(s) 380, 759
BpuMI CCSGG 1 cut(s) 308
BsaAI YACGTR 1 cut(s) 451
BsaHI GRCGYC 2 cut(s) 66, 147
BsaI GGTCTC 2 cut(s) 152, 777
BsaJI CCNNGG 7 cut(s) 61, 142, 191, 261, 342, 343, 750
BsaXI ACNNNNNCTCC 2 cut(s) 227, 257
Bsc4I CCNNNNNNNGG 4 cut(s) 184, 310, 380, 726
Bse118I RCCGGY 1 cut(s) 68
Bse21I CCTNAGG 1 cut(s) 725
BseBI CCWGG 3 cut(s) 185, 344, 736
BseDI CCNNGG 7 cut(s) 61, 142, 191, 261, 342, 343, 750
BseLI CCNNNNNNNGG 4 cut(s) 184, 310, 380, 726
BseMII CTCAG 3 cut(s) 281, 341, 671
BsePI GCGCGC 1 cut(s) 118
BseRI GAGGAG 2 cut(s) 235, 649
BseX3I CGGCCG 1 cut(s) 443
BseXI GCAGC 3 cut(s) 183, 595, 628
Bsh1236I CGCG 4 cut(s) 48, 120, 144, 558
Bsh1285I CGRYCG 3 cut(s) 136, 381, 446
BshFI GGCC 6 cut(s) 60, 92, 114, 445, 521, 749
BshNI GGYRCC 3 cut(s) 65, 173, 257
BsiEI CGRYCG 3 cut(s) 136, 381, 446
BsiHKCI CYCGRG 1 cut(s) 350
BsiSI CCGG 3 cut(s) 69, 255, 308
BsiWI CGTACG 1 cut(s) 537
BslFI GGGAC 1 cut(s) 173
BslI CCNNNNNNNGG 4 cut(s) 184, 310, 380, 726
BsmAI GTCTC 2 cut(s) 152, 777
BsmFI GGGAC 1 cut(s) 173
BsnI GGCC 6 cut(s) 60, 92, 114, 445, 521, 749
Bso31I GGTCTC 2 cut(s) 152, 777
BsoBI CYCGRG 1 cut(s) 350
Bsp1286I GDGCHC 2 cut(s) 351, 658
Bsp1407I TGTACA 1 cut(s) 96
Bsp143I GATC 5 cut(s) 265, 330, 378, 424, 477
BspANI GGCC 6 cut(s) 60, 92, 114, 445, 521, 749
BspCNI CTCAG 3 cut(s) 282, 340, 670
BspFNI CGCG 4 cut(s) 48, 120, 144, 558
BspLI GGNNCC 6 cut(s) 67, 175, 189, 227, 259, 733
BspMAI CTGCAG 1 cut(s) 201
BspMI ACCTGC 2 cut(s) 565, 728
BspPI GGATC 2 cut(s) 273, 472
BspT107I GGYRCC 3 cut(s) 65, 173, 257
BspTNI GGTCTC 2 cut(s) 152, 777
BsrBI CCGCTC 2 cut(s) 442, 598
BsrFI RCCGGY 1 cut(s) 68
BsrGI TGTACA 1 cut(s) 96
BssAI RCCGGY 1 cut(s) 68
BssECI CCNNGG 7 cut(s) 61, 142, 191, 261, 342, 343, 750
BssHII GCGCGC 1 cut(s) 118
BssMI GATC 5 cut(s) 265, 330, 378, 424, 477
BssNI GRCGYC 2 cut(s) 66, 147
BssT1I CCWWGG 1 cut(s) 261
Bst2UI CCWGG 3 cut(s) 185, 344, 736
Bst4CI ACNGT 3 cut(s) 103, 137, 163
Bst6I CTCTTC 2 cut(s) 134, 748
BstACI GRCGYC 2 cut(s) 66, 147
BstAUI TGTACA 1 cut(s) 96
BstBAI YACGTR 1 cut(s) 451
BstC8I GCNNGC 5 cut(s) 46, 70, 116, 120, 695
BstDEI CTNAG 5 cut(s) 290, 327, 489, 657, 725
BstDSI CCRYGG 2 cut(s) 142, 191
BstENI CCTNNNNNAGG 1 cut(s) 724
BstFNI CGCG 4 cut(s) 48, 120, 144, 558
BstH2I RGCGCY 3 cut(s) 69, 75, 461
BstHHI GCGC 9 cut(s) 50, 68, 74, 120, 122, 412, 460, 560, 583
BstKTI GATC 5 cut(s) 268, 333, 381, 427, 480
BstMAI GTCTC 2 cut(s) 152, 777
BstMBI GATC 5 cut(s) 265, 330, 378, 424, 477
BstMCI CGRYCG 3 cut(s) 136, 381, 446
BstMWI GCNNNNNNNGC 8 cut(s) 50, 117, 202, 407, 480, 580, 694, 788
BstNI CCWGG 3 cut(s) 185, 344, 736
BstSCI CCNGG 4 cut(s) 183, 306, 342, 734
BstSFI CTRYAG 1 cut(s) 197
BstUI CGCG 4 cut(s) 48, 120, 144, 558
BstV1I GCAGC 3 cut(s) 183, 595, 628
BstX2I RGATCY 2 cut(s) 265, 330
BstYI RGATCY 2 cut(s) 265, 330
BstZI CGGCCG 1 cut(s) 443
Bsu36I CCTNAGG 1 cut(s) 725
BsuRI GGCC 6 cut(s) 60, 92, 114, 445, 521, 749
BtgI CCRYGG 2 cut(s) 142, 191
BtrI CACGTC 1 cut(s) 517
BveI ACCTGC 2 cut(s) 565, 728
Cac8I GCNNGC 5 cut(s) 46, 70, 116, 120, 695
CaiI CAGNNNCTG 1 cut(s) 433
CciNI GCGGCCGC 1 cut(s) 443
CfoI GCGC 9 cut(s) 50, 68, 74, 120, 122, 412, 460, 560, 583
Cfr10I RCCGGY 1 cut(s) 68
Cfr13I GGNCC 6 cut(s) 91, 187, 225, 367, 600, 738
Cfr42I CCGCGG 1 cut(s) 145
CseI GACGC 1 cut(s) 136
CsiI ACCWGGT 1 cut(s) 734
Csp6I GTAC 3 cut(s) 97, 355, 538
CviAII CATG 1 cut(s) 792
CviQI GTAC 3 cut(s) 97, 355, 538
DdeI CTNAG 5 cut(s) 290, 327, 489, 657, 725
DinI GGCGCC 1 cut(s) 67
DpnI GATC 5 cut(s) 267, 332, 380, 426, 479
DpnII GATC 5 cut(s) 265, 330, 378, 424, 477
DrdI GACNNNNNNGTC 2 cut(s) 161, 365
DseDI GACNNNNNNGTC 2 cut(s) 161, 365
EaeI YGGCCR 3 cut(s) 112, 443, 519
EagI CGGCCG 1 cut(s) 443
Eam1104I CTCTTC 2 cut(s) 134, 748
EarI CTCTTC 2 cut(s) 134, 748
EciI GGCGGA 3 cut(s) 560, 608, 638
EclXI CGGCCG 1 cut(s) 443
Eco130I CCWWGG 1 cut(s) 261
Eco24I GRGCYC 2 cut(s) 351, 658
Eco31I GGTCTC 2 cut(s) 152, 777
Eco47I GGWCC 5 cut(s) 187, 225, 367, 600, 738
Eco52I CGGCCG 1 cut(s) 443
Eco57I CTGAAG 1 cut(s) 254
Eco72I CACGTG 1 cut(s) 451
Eco81I CCTNAGG 1 cut(s) 725
Eco88I CYCGRG 1 cut(s) 350
EcoNI CCTNNNNNAGG 1 cut(s) 724
EcoO109I RGGNCCY 3 cut(s) 225, 367, 738
EcoRII CCWGG 3 cut(s) 183, 342, 734
EcoT14I CCWWGG 1 cut(s) 261
EcoT38I GRGCYC 2 cut(s) 351, 658
EgeI GGCGCC 1 cut(s) 67
EheI GGCGCC 1 cut(s) 67
ErhI CCWWGG 1 cut(s) 261
FaeI CATG 1 cut(s) 795
FaiI YATR 1 cut(s) 793
FaqI GGGAC 1 cut(s) 173
FatI CATG 1 cut(s) 791
FauI CCCGC 3 cut(s) 236, 311, 459
FblI GTMKAC 1 cut(s) 105
FriOI GRGCYC 2 cut(s) 351, 658
FspBI CTAG 1 cut(s) 671
GlaI GCGC 9 cut(s) 49, 67, 73, 119, 121, 411, 459, 559, 582
HaeII RGCGCY 3 cut(s) 69, 75, 461
HaeIII GGCC 6 cut(s) 60, 92, 114, 445, 521, 749
HapII CCGG 3 cut(s) 69, 255, 308
HgaI GACGC 1 cut(s) 136
HhaI GCGC 9 cut(s) 50, 68, 74, 120, 122, 412, 460, 560, 583
Hin1I GRCGYC 2 cut(s) 66, 147
Hin1II CATG 1 cut(s) 795
Hin6I GCGC 9 cut(s) 48, 66, 72, 118, 120, 410, 458, 558, 581
HinP1I GCGC 9 cut(s) 48, 66, 72, 118, 120, 410, 458, 558, 581
HincII GTYRAC 4 cut(s) 85, 106, 280, 714
HindII GTYRAC 4 cut(s) 85, 106, 280, 714
HpaII CCGG 3 cut(s) 69, 255, 308
HphI GGTGA 1 cut(s) 25
Hpy166II GTNNAC 5 cut(s) 85, 99, 106, 280, 714
Hpy188I TCNGA 3 cut(s) 273, 291, 330
Hpy188III TCNNGA 4 cut(s) 223, 382, 433, 776
Hpy8I GTNNAC 5 cut(s) 85, 99, 106, 280, 714
Hpy99I CGWCG 8 cut(s) 107, 110, 158, 167, 362, 379, 518, 566
HpyAV CCTTC 7 cut(s) 37, 64, 164, 250, 358, 613, 761
HpyCH4III ACNGT 3 cut(s) 103, 137, 163
HpyCH4IV ACGT 2 cut(s) 450, 516
HpyCH4V TGCA 1 cut(s) 199
HpyF10VI GCNNNNNNNGC 8 cut(s) 50, 117, 202, 407, 480, 580, 694, 788
HpyF3I CTNAG 5 cut(s) 290, 327, 489, 657, 725
HpySE526I ACGT 2 cut(s) 450, 516
Hsp92I GRCGYC 2 cut(s) 66, 147
Hsp92II CATG 1 cut(s) 795
HspAI GCGC 9 cut(s) 48, 66, 72, 118, 120, 410, 458, 558, 581
KasI GGCGCC 1 cut(s) 65
KroI GCCGGC 1 cut(s) 68
KroNI GCCGGC 1 cut(s) 70
KspI CCGCGG 1 cut(s) 145
Kzo9I GATC 5 cut(s) 265, 330, 378, 424, 477
LmnI GCTCC 4 cut(s) 435, 439, 595, 625
Lsp1109I GCAGC 3 cut(s) 183, 595, 628
MabI ACCWGGT 1 cut(s) 734
MaeI CTAG 1 cut(s) 671
MaeII ACGT 2 cut(s) 450, 516
MalI GATC 5 cut(s) 267, 332, 380, 426, 479
MbiI CCGCTC 2 cut(s) 442, 598
MboI GATC 5 cut(s) 265, 330, 378, 424, 477
MboII GAAGA 5 cut(s) 121, 205, 260, 325, 735
MflI RGATCY 2 cut(s) 265, 330
MhlI GDGCHC 2 cut(s) 351, 658
MlsI TGGCCA 1 cut(s) 521
MluNI TGGCCA 1 cut(s) 521
Mly113I GGCGCC 1 cut(s) 66
Mox20I TGGCCA 1 cut(s) 521
MreI CGCCGGCG 1 cut(s) 68
MroNI GCCGGC 1 cut(s) 68
MscI TGGCCA 1 cut(s) 521
MslI CAYNNNNRTG 1 cut(s) 790
Msp20I TGGCCA 1 cut(s) 521
MspA1I CMGCKG 1 cut(s) 144
MspI CCGG 3 cut(s) 69, 255, 308
MspR9I CCNGG 4 cut(s) 185, 308, 344, 736
MvaI CCWGG 3 cut(s) 185, 344, 736
MvnI CGCG 4 cut(s) 48, 120, 144, 558
MwoI GCNNNNNNNGC 8 cut(s) 50, 117, 202, 407, 480, 580, 694, 788
NaeI GCCGGC 1 cut(s) 70
NarI GGCGCC 1 cut(s) 66
NciI CCSGG 1 cut(s) 308
NdeII GATC 5 cut(s) 265, 330, 378, 424, 477
NgoMIV GCCGGC 1 cut(s) 68
NlaIII CATG 1 cut(s) 795
NlaIV GGNNCC 6 cut(s) 67, 175, 189, 227, 259, 733
NmeAIII GCCGAG 2 cut(s) 42, 68
NotI GCGGCCGC 1 cut(s) 443
PaeR7I CTCGAG 1 cut(s) 350
PaqCI CACCTGC 1 cut(s) 565
PasI CCCWGGG 1 cut(s) 343
PauI GCGCGC 1 cut(s) 118
PcsI WCGNNNNNNNCGW 3 cut(s) 159, 357, 533
PdiI GCCGGC 1 cut(s) 70
Pfl23II CGTACG 1 cut(s) 537
PflMI CCANNNNNTGG 1 cut(s) 184
Ple19I CGATCG 1 cut(s) 381
PluTI GGCGCC 1 cut(s) 69
PmaCI CACGTG 1 cut(s) 451
PmlI CACGTG 1 cut(s) 451
Ppu21I YACGTR 1 cut(s) 451
PpuMI RGGWCCY 3 cut(s) 225, 367, 738
Psp5II RGGWCCY 3 cut(s) 225, 367, 738
Psp6I CCWGG 3 cut(s) 183, 342, 734
PspCI CACGTG 1 cut(s) 451
PspGI CCWGG 3 cut(s) 183, 342, 734
PspLI CGTACG 1 cut(s) 537
PspN4I GGNNCC 6 cut(s) 67, 175, 189, 227, 259, 733
PspPI GGNCC 6 cut(s) 91, 187, 225, 367, 600, 738
PspPPI RGGWCCY 3 cut(s) 225, 367, 738
PspXI VCTCGAGB 1 cut(s) 350
PstI CTGCAG 1 cut(s) 201
PstNI CAGNNNCTG 1 cut(s) 433
PsuI RGATCY 2 cut(s) 265, 330
PteI GCGCGC 1 cut(s) 118
PvuI CGATCG 1 cut(s) 381
RsaI GTAC 3 cut(s) 98, 356, 539
RsaNI GTAC 3 cut(s) 97, 355, 538
RseI CAYNNNNRTG 1 cut(s) 790
SacII CCGCGG 1 cut(s) 145
SalI GTCGAC 1 cut(s) 104
Sau3AI GATC 5 cut(s) 265, 330, 378, 424, 477
Sau96I GGNCC 6 cut(s) 91, 187, 225, 367, 600, 738
ScrFI CCNGG 4 cut(s) 185, 308, 344, 736
SduI GDGCHC 2 cut(s) 351, 658
SexAI ACCWGGT 1 cut(s) 734
SfcI CTRYAG 1 cut(s) 197
SfoI GGCGCC 1 cut(s) 67
Sfr274I CTCGAG 1 cut(s) 350
Sfr303I CCGCGG 1 cut(s) 145
SgrAI CRCCGGYG 1 cut(s) 68
SgrBI CCGCGG 1 cut(s) 145
SgrDI CGTCGACG 1 cut(s) 104
SinI GGWCC 5 cut(s) 187, 225, 367, 600, 738
SlaI CTCGAG 1 cut(s) 350
SmiMI CAYNNNNRTG 1 cut(s) 790
SmlI CTYRAG 3 cut(s) 350, 395, 774
SmoI CTYRAG 3 cut(s) 350, 395, 774
SspDI GGCGCC 1 cut(s) 65
SspMI CTAG 1 cut(s) 671
StyD4I CCNGG 4 cut(s) 183, 306, 342, 734
StyI CCWWGG 1 cut(s) 261
TaaI ACNGT 3 cut(s) 103, 137, 163
TaiI ACGT 2 cut(s) 453, 519
TaqI TCGA 7 cut(s) 105, 132, 153, 216, 351, 377, 564
TatI WGTACW 1 cut(s) 96
TauI GCSGC 7 cut(s) 20, 53, 114, 147, 445, 448, 688
TseI GCWGC 4 cut(s) 196, 583, 641, 782
TspGWI ACGGA 1 cut(s) 452
Van91I CCANNNNNTGG 1 cut(s) 184
VpaK11BI GGWCC 5 cut(s) 187, 225, 367, 600, 738
XagI CCTNNNNNAGG 1 cut(s) 724
XcmI CCANNNNNNNNNTGG 1 cut(s) 610
XhoI CTCGAG 1 cut(s) 350
XmiI GTMKAC 1 cut(s) 105
XspI CTAG 1 cut(s) 671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.