Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003652.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

92682 .. 96152

Gene Structure 3471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

atgggcacttctagaattgtgttattggatgtacagctagacaaatacaagaactatgatttcgggagatgtccaagagtgtactgctgtggacaaccctgcctaccagttggccaatcagacatcccacggtcaagcactgtaaaaatatactgccccaagtgtgaagatatctaccagactaccacccttggtcgaagtatcaaggtagtatcctttgtatttataattctgcatttgaaactgctggctgcatataagcagctgccgacaatttcggcctctagcccaacttcgatcagaggcaattgtaggccagagaattgggagcagaggctgacgatgccgacggaggtctggaaaacgaggatgcagagggttaggttgcccattgctgaagaggatgaggatgaagaagaagaggaccatgaggaagaaagagggtttcaccggagatcgagaaagaaaatgggctcgatgggcgcggtggtggtgttggttaacctgatcgaccagtgtggtctggtgttggcaaggagagaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169

Pfam Domains

Protein Families

CK_II_beta

Protein Analysis

181

Amino Acids

20.81

Weight (kDa)

8.41

Isoelectric Point (pI)

58.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CK_II_beta	PF01214	13 - 73	2.3e-20	Casein kinase II regulatory subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	227
AccII	CGCG	1 cut(s)	485
AciI	CCGC	1 cut(s)	485
AcoI	YGGCCR	1 cut(s)	112
AcuI	CTGAAG	1 cut(s)	417
AfaI	GTAC	2 cut(s)	33, 83
AgsI	TTSAA	1 cut(s)	241
AluBI	AGCT	2 cut(s)	37, 265
AluI	AGCT	2 cut(s)	37, 265
AlwNI	CAGNNNCTG	1 cut(s)	337
AoxI	GGCC	3 cut(s)	112, 279, 314
ApeKI	GCWGC	3 cut(s)	251, 262, 265
AspLEI	GCGC	1 cut(s)	485
AspS9I	GGNCC	1 cut(s)	424
AsuHPI	GGTGA	1 cut(s)	440
AvaII	GGWCC	1 cut(s)	424
BaeGI	GKGCMC	1 cut(s)	8
BalI	TGGCCA	1 cut(s)	114
BanII	GRGCYC	1 cut(s)	476
BbvI	GCAGC	3 cut(s)	238, 252, 274
BccI	CCATC	1 cut(s)	472
BciVI	GTATCC	1 cut(s)	223
BfaI	CTAG	3 cut(s)	12, 38, 285
BfuI	GTATCC	1 cut(s)	223
BisI	GCNGC	3 cut(s)	252, 263, 266
BlsI	GCNGC	3 cut(s)	253, 264, 267
Bme18I	GGWCC	1 cut(s)	424
BmgT120I	GGNCC	1 cut(s)	424
BmsI	GCATC	2 cut(s)	333, 360
BoxI	GACNNNNGTC	1 cut(s)	353
BsaJI	CCNNGG	2 cut(s)	128, 190
BsaWI	WCCGGW	1 cut(s)	450
Bse1I	ACTGG	2 cut(s)	107, 514
Bse3DI	GCAATG	1 cut(s)	390
BseDI	CCNNGG	2 cut(s)	128, 190
BseGI	GGATG	5 cut(s)	34, 123, 375, 409, 415
BseMI	GCAATG	1 cut(s)	390
BseNI	ACTGG	2 cut(s)	107, 514
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	3 cut(s)	238, 252, 274
Bsh1236I	CGCG	1 cut(s)	485
BshFI	GGCC	3 cut(s)	114, 281, 316
BsiSI	CCGG	1 cut(s)	451
BsnI	GGCC	3 cut(s)	114, 281, 316
Bsp1286I	GDGCHC	2 cut(s)	8, 476
Bsp1407I	TGTACA	1 cut(s)	31
Bsp143I	GATC	3 cut(s)	297, 455, 507
BspACI	CCGC	1 cut(s)	485
BspANI	GGCC	3 cut(s)	114, 281, 316
BspFNI	CGCG	1 cut(s)	485
BsrDI	GCAATG	1 cut(s)	390
BsrGI	TGTACA	1 cut(s)	31
BsrI	ACTGG	2 cut(s)	107, 514
BssECI	CCNNGG	2 cut(s)	128, 190
BssMI	GATC	3 cut(s)	297, 455, 507
BssT1I	CCWWGG	1 cut(s)	190
Bst4CI	ACNGT	2 cut(s)	132, 142
Bst6I	CTCTTC	2 cut(s)	393, 414
BstAUI	TGTACA	1 cut(s)	31
BstC8I	GCNNGC	1 cut(s)	249
BstDSI	CCRYGG	1 cut(s)	128
BstF5I	GGATG	5 cut(s)	34, 123, 375, 409, 415
BstFNI	CGCG	1 cut(s)	485
BstHHI	GCGC	1 cut(s)	485
BstKTI	GATC	3 cut(s)	300, 458, 510
BstMBI	GATC	3 cut(s)	297, 455, 507
BstMWI	GCNNNNNNNGC	2 cut(s)	343, 480
BstPAI	GACNNNNGTC	1 cut(s)	353
BstSLI	GKGCMC	1 cut(s)	8
BstUI	CGCG	1 cut(s)	485
BstV1I	GCAGC	3 cut(s)	238, 252, 274
BstXI	CCANNNNNNTGG	1 cut(s)	324
BsuI	GTATCC	1 cut(s)	223
BsuRI	GGCC	3 cut(s)	114, 281, 316
BtgI	CCRYGG	1 cut(s)	128
BtsCI	GGATG	5 cut(s)	34, 123, 375, 409, 415
BtsIMutI	CAGTG	2 cut(s)	138, 521
Cac8I	GCNNGC	1 cut(s)	249
CaiI	CAGNNNCTG	1 cut(s)	337
CfoI	GCGC	1 cut(s)	485
Cfr13I	GGNCC	1 cut(s)	424
Csp6I	GTAC	2 cut(s)	32, 82
CviAII	CATG	1 cut(s)	428
CviJI	RGCY	9 cut(s)	37, 114, 251, 265, 281, 288, 316, 337, 474
CviKI_1	RGCY	9 cut(s)	37, 114, 251, 265, 281, 288, 316, 337, 474
CviQI	GTAC	2 cut(s)	32, 82
DpnI	GATC	3 cut(s)	299, 457, 509
DpnII	GATC	3 cut(s)	297, 455, 507
EaeI	YGGCCR	1 cut(s)	112
Eam1104I	CTCTTC	2 cut(s)	393, 414
EarI	CTCTTC	2 cut(s)	393, 414
Eco130I	CCWWGG	1 cut(s)	190
Eco24I	GRGCYC	1 cut(s)	476
Eco32I	GATATC	1 cut(s)	172
Eco47I	GGWCC	1 cut(s)	424
Eco57I	CTGAAG	1 cut(s)	417
EcoRV	GATATC	1 cut(s)	172
EcoT14I	CCWWGG	1 cut(s)	190
EcoT38I	GRGCYC	1 cut(s)	476
ErhI	CCWWGG	1 cut(s)	190
FaeI	CATG	1 cut(s)	431
FaiI	YATR	6 cut(s)	57, 151, 227, 256, 258, 429
FatI	CATG	1 cut(s)	427
Fnu4HI	GCNGC	3 cut(s)	252, 263, 266
FokI	GGATG	5 cut(s)	41, 110, 382, 416, 422
FriOI	GRGCYC	1 cut(s)	476
Fsp4HI	GCNGC	3 cut(s)	252, 263, 266
FspBI	CTAG	3 cut(s)	12, 38, 285
GlaI	GCGC	1 cut(s)	484
GluI	GCNGC	3 cut(s)	252, 263, 266
HaeIII	GGCC	3 cut(s)	114, 281, 316
HapII	CCGG	1 cut(s)	451
HhaI	GCGC	1 cut(s)	485
Hin1II	CATG	1 cut(s)	431
Hin6I	GCGC	1 cut(s)	483
HinP1I	GCGC	1 cut(s)	483
HincII	GTYRAC	1 cut(s)	502
HindII	GTYRAC	1 cut(s)	502
HpaI	GTTAAC	1 cut(s)	502
HpaII	CCGG	1 cut(s)	451
HphI	GGTGA	1 cut(s)	440
Hpy166II	GTNNAC	3 cut(s)	82, 92, 502
Hpy188I	TCNGA	2 cut(s)	121, 302
Hpy188III	TCNNGA	4 cut(s)	12, 64, 358, 459
Hpy8I	GTNNAC	3 cut(s)	82, 92, 502
Hpy99I	CGWCG	1 cut(s)	352
HpyCH4III	ACNGT	2 cut(s)	132, 142
HpyCH4V	TGCA	3 cut(s)	235, 254, 373
HpyF10VI	GCNNNNNNNGC	2 cut(s)	343, 480
Hsp92II	CATG	1 cut(s)	431
HspAI	GCGC	1 cut(s)	483
KspAI	GTTAAC	1 cut(s)	502
Kzo9I	GATC	3 cut(s)	297, 455, 507
LmnI	GCTCC	1 cut(s)	328
Lsp1109I	GCAGC	3 cut(s)	238, 252, 274
LweI	GCATC	2 cut(s)	333, 360
MaeI	CTAG	3 cut(s)	12, 38, 285
MalI	GATC	3 cut(s)	299, 457, 509
MboI	GATC	3 cut(s)	297, 455, 507
MboII	GAAGA	6 cut(s)	179, 410, 425, 428, 431, 446
MfeI	CAATTG	1 cut(s)	307
MhlI	GDGCHC	2 cut(s)	8, 476
MlsI	TGGCCA	1 cut(s)	114
MluCI	AATT	5 cut(s)	15, 228, 273, 307, 322
MluNI	TGGCCA	1 cut(s)	114
Mox20I	TGGCCA	1 cut(s)	114
MscI	TGGCCA	1 cut(s)	114
MseI	TTAA	1 cut(s)	501
Msp20I	TGGCCA	1 cut(s)	114
MspA1I	CMGCKG	1 cut(s)	265
MspI	CCGG	1 cut(s)	451
MunI	CAATTG	1 cut(s)	307
MvnI	CGCG	1 cut(s)	485
MwoI	GCNNNNNNNGC	2 cut(s)	343, 480
NdeII	GATC	3 cut(s)	297, 455, 507
NlaIII	CATG	1 cut(s)	431
PkrI	GCNGC	3 cut(s)	253, 264, 267
PshAI	GACNNNNGTC	1 cut(s)	353
PsiI	TTATAA	1 cut(s)	227
PspPI	GGNCC	1 cut(s)	424
PstNI	CAGNNNCTG	1 cut(s)	337
PvuII	CAGCTG	1 cut(s)	265
RsaI	GTAC	2 cut(s)	33, 83
RsaNI	GTAC	2 cut(s)	32, 82
SaqAI	TTAA	1 cut(s)	501
SatI	GCNGC	3 cut(s)	252, 263, 266
Sau3AI	GATC	3 cut(s)	297, 455, 507
Sau96I	GGNCC	1 cut(s)	424
SduI	GDGCHC	2 cut(s)	8, 476
SetI	ASST	6 cut(s)	39, 210, 267, 357, 386, 507
SfaNI	GCATC	2 cut(s)	333, 360
SinI	GGWCC	1 cut(s)	424
Sse9I	AATT	5 cut(s)	15, 228, 273, 307, 322
SsiI	CCGC	1 cut(s)	485
SspMI	CTAG	3 cut(s)	12, 38, 285
StyI	CCWWGG	1 cut(s)	190
TaaI	ACNGT	2 cut(s)	132, 142
TaqI	TCGA	5 cut(s)	196, 296, 458, 476, 510
TasI	AATT	5 cut(s)	15, 228, 273, 307, 322
TatI	WGTACW	2 cut(s)	31, 81
Tru1I	TTAA	1 cut(s)	501
Tru9I	TTAA	1 cut(s)	501
TscAI	CASTG	2 cut(s)	145, 521
TseI	GCWGC	3 cut(s)	251, 262, 265
TspDTI	ATGAA	1 cut(s)	426
TspGWI	ACGGA	1 cut(s)	365
TspRI	CASTG	2 cut(s)	145, 521
VpaK11BI	GGWCC	1 cut(s)	424
XbaI	TCTAGA	1 cut(s)	11
XspI	CTAG	3 cut(s)	12, 38, 285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.