Rmu_sc0003662.1_g000018

LysM domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003662.1
OG0031102
Physical Location & Seq
Reverse (-)
95230 .. 99149
3920 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 582 bp
atggctagggctaacttggttctacttctagttgtctctcttcttgtcctgatttcagtagctgagagtaaacgatttgctgaggaaggtgatacttgcactagtgtcgctcaaacgttcaaactgagtctcgatgccttcctttccattaaccctaatatcaattgcgacagcttctttgtgggtcaatggctctgtattgatggtgctccgaagtctcgaacagctctcgtatattttgagattgtgaccttctcactaaacagaggaaaacagagcaagaaacaaacagaggaaagagatggacggttcctacagcccagtgaggattattgggcaatgtcagatttctccaccacccggattgaatccgcctgcgtcagaaccgccgtgcgccgtcaaccatcgtacgtcgtccagtggtcgatctccagatcgcccacgatccttgctcagcatagtcgctcagcaatagcaagctgcctcgctcagcgtcgtcgctcagccaccacaagctgcacagccgcgttcgatcgattccagccgcgttgcccggttcacatcagcatcgatggctattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

193

Amino Acids

21.6

Weight (kDa)

9.1

Isoelectric Point (pI)

74.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LysM PF01476 29 - 67 7.6e-08 LysM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031102)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000865.1_g000002 Rmu_sc0003662.1_g000018

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 527, 547
AciI CCGC 4 cut(s) 372, 387, 525, 545
AclI AACGTT 1 cut(s) 116
AclWI GGATC 1 cut(s) 439
AfaI GTAC 1 cut(s) 410
AfiI CCNNNNNNNGG 1 cut(s) 360
AgsI TTSAA 2 cut(s) 121, 368
AhlI ACTAGT 1 cut(s) 101
AluBI AGCT 5 cut(s) 62, 174, 227, 480, 516
AluI AGCT 5 cut(s) 62, 174, 227, 480, 516
Alw21I GWGCWC 1 cut(s) 211
Alw26I GTCTC 3 cut(s) 40, 134, 222
AlwI GGATC 1 cut(s) 439
AlwNI CAGNNNCTG 1 cut(s) 62
ApeKI GCWGC 2 cut(s) 480, 516
ArsI GACNNNNNNTTYG 2 cut(s) 161, 193
AspLEI GCGC 1 cut(s) 396
AsuC2I CCSGG 2 cut(s) 361, 554
AsuHPI GGTGA 1 cut(s) 101
Bbv12I GWGCWC 1 cut(s) 211
BbvCI CCTCAGC 1 cut(s) 81
BbvI GCAGC 2 cut(s) 467, 503
BccI CCATC 4 cut(s) 197, 296, 412, 566
BceAI ACGGC 2 cut(s) 374, 381
BcgI CGANNNNNNTGC 2 cut(s) 88, 122
BcnI CCSGG 2 cut(s) 361, 554
BcoDI GTCTC 3 cut(s) 40, 134, 222
BcuI ACTAGT 1 cut(s) 101
BfaI CTAG 3 cut(s) 6, 29, 102
BfmI CTRYAG 1 cut(s) 314
BisI GCNGC 4 cut(s) 481, 517, 525, 545
BlpI GCTNAGC 4 cut(s) 453, 466, 489, 502
BlsI GCNGC 4 cut(s) 482, 518, 526, 546
Bme1390I CCNGG 2 cut(s) 361, 554
BmiI GGNNCC 1 cut(s) 311
BmrFI CCNGG 2 cut(s) 361, 554
BmrI ACTGGG 1 cut(s) 315
BmsI GCATC 2 cut(s) 124, 576
BmuI ACTGGG 1 cut(s) 315
BpmI CTGGAG 1 cut(s) 415
Bpu10I CCTNAGC 1 cut(s) 81
Bpu1102I GCTNAGC 4 cut(s) 453, 466, 489, 502
BpuMI CCSGG 2 cut(s) 361, 554
Bsa29I ATCGAT 2 cut(s) 535, 570
Bsc4I CCNNNNNNNGG 1 cut(s) 360
Bse1I ACTGG 2 cut(s) 321, 418
Bse3DI GCAATG 1 cut(s) 345
BseCI ATCGAT 2 cut(s) 535, 570
BseLI CCNNNNNNNGG 1 cut(s) 360
BseMI GCAATG 1 cut(s) 345
BseMII CTCAG 7 cut(s) 54, 72, 116, 467, 480, 503, 516
BseNI ACTGG 2 cut(s) 321, 418
BseXI GCAGC 2 cut(s) 467, 503
BsgI GTGCAG 1 cut(s) 502
Bsh1236I CGCG 2 cut(s) 527, 547
Bsh1285I CGRYCG 1 cut(s) 535
BshVI ATCGAT 2 cut(s) 535, 570
BsiEI CGRYCG 1 cut(s) 535
BsiHKAI GWGCWC 1 cut(s) 211
BsiSI CCGG 2 cut(s) 361, 554
BsiWI CGTACG 1 cut(s) 408
BslI CCNNNNNNNGG 1 cut(s) 360
BsmAI GTCTC 3 cut(s) 40, 134, 222
Bsp1286I GDGCHC 1 cut(s) 211
Bsp143I GATC 4 cut(s) 426, 434, 444, 532
Bsp1720I GCTNAGC 4 cut(s) 453, 466, 489, 502
BspACI CCGC 4 cut(s) 372, 387, 525, 545
BspCNI CTCAG 7 cut(s) 55, 73, 117, 466, 479, 502, 515
BspDI ATCGAT 2 cut(s) 535, 570
BspFNI CGCG 2 cut(s) 527, 547
BspLI GGNNCC 1 cut(s) 311
BspPI GGATC 1 cut(s) 439
BsrDI GCAATG 1 cut(s) 345
BsrI ACTGG 2 cut(s) 321, 418
BssMI GATC 4 cut(s) 426, 434, 444, 532
Bst4CI ACNGT 1 cut(s) 309
Bst6I CTCTTC 1 cut(s) 45
BstC8I GCNNGC 2 cut(s) 376, 478
BstDEI CTNAG 7 cut(s) 63, 81, 125, 453, 466, 489, 502
BstFNI CGCG 2 cut(s) 527, 547
BstHHI GCGC 1 cut(s) 396
BstKTI GATC 4 cut(s) 429, 437, 447, 535
BstMAI GTCTC 3 cut(s) 40, 134, 222
BstMBI GATC 4 cut(s) 426, 434, 444, 532
BstMCI CGRYCG 1 cut(s) 535
BstMWI GCNNNNNNNGC 1 cut(s) 573
BstSCI CCNGG 2 cut(s) 359, 552
BstSFI CTRYAG 1 cut(s) 314
BstUI CGCG 2 cut(s) 527, 547
BstV1I GCAGC 2 cut(s) 467, 503
Bsu15I ATCGAT 2 cut(s) 535, 570
BsuTUI ATCGAT 2 cut(s) 535, 570
BtsIMutI CAGTG 2 cut(s) 328, 425
Cac8I GCNNGC 2 cut(s) 376, 478
CaiI CAGNNNCTG 1 cut(s) 62
CfoI GCGC 1 cut(s) 396
ClaI ATCGAT 2 cut(s) 535, 570
CseI GACGC 2 cut(s) 367, 482
Csp6I GTAC 1 cut(s) 409
CspCI CAANNNNNGTGG 4 cut(s) 346, 381, 430, 465
CviQI GTAC 1 cut(s) 409
DdeI CTNAG 7 cut(s) 63, 81, 125, 453, 466, 489, 502
DpnI GATC 4 cut(s) 428, 436, 446, 534
DpnII GATC 4 cut(s) 426, 434, 444, 532
Eam1104I CTCTTC 1 cut(s) 45
EarI CTCTTC 1 cut(s) 45
EciI GGCGGA 1 cut(s) 361
FaiI YATR 2 cut(s) 235, 459
Fnu4HI GCNGC 4 cut(s) 481, 517, 525, 545
Fsp4HI GCNGC 4 cut(s) 481, 517, 525, 545
FspBI CTAG 3 cut(s) 6, 29, 102
GlaI GCGC 1 cut(s) 395
GluI GCNGC 4 cut(s) 481, 517, 525, 545
GsuI CTGGAG 1 cut(s) 415
HapII CCGG 2 cut(s) 361, 554
HgaI GACGC 2 cut(s) 367, 482
HhaI GCGC 1 cut(s) 396
Hin6I GCGC 1 cut(s) 394
HinP1I GCGC 1 cut(s) 394
HincII GTYRAC 1 cut(s) 401
HindII GTYRAC 1 cut(s) 401
HinfI GANTC 3 cut(s) 127, 368, 537
HpaII CCGG 2 cut(s) 361, 554
HphI GGTGA 1 cut(s) 101
Hpy166II GTNNAC 3 cut(s) 71, 401, 559
Hpy188I TCNGA 3 cut(s) 213, 346, 383
Hpy188III TCNNGA 4 cut(s) 49, 131, 219, 432
Hpy8I GTNNAC 3 cut(s) 71, 401, 559
Hpy99I CGWCG 3 cut(s) 416, 498, 501
HpyAV CCTTC 3 cut(s) 80, 148, 262
HpyCH4III ACNGT 1 cut(s) 309
HpyCH4IV ACGT 2 cut(s) 116, 411
HpyCH4V TGCA 2 cut(s) 99, 519
HpyF10VI GCNNNNNNNGC 1 cut(s) 573
HpyF3I CTNAG 7 cut(s) 63, 81, 125, 453, 466, 489, 502
HpySE526I ACGT 2 cut(s) 116, 411
HspAI GCGC 1 cut(s) 394
Kzo9I GATC 4 cut(s) 426, 434, 444, 532
LmnI GCTCC 1 cut(s) 214
LpnPI CCDG 8 cut(s) 62, 334, 374, 388, 431, 445, 554, 567
Lsp1109I GCAGC 2 cut(s) 467, 503
LweI GCATC 2 cut(s) 124, 576
MaeI CTAG 3 cut(s) 6, 29, 102
MaeII ACGT 2 cut(s) 116, 411
MaeIII GTNAC 1 cut(s) 247
MalI GATC 4 cut(s) 428, 436, 446, 534
MboI GATC 4 cut(s) 426, 434, 444, 532
MboII GAAGA 1 cut(s) 32
MfeI CAATTG 1 cut(s) 163
MhlI GDGCHC 1 cut(s) 211
MluCI AATT 1 cut(s) 163
MlyI GAGTC 1 cut(s) 136
MnlI CCTC 5 cut(s) 76, 260, 286, 319, 494
MseI TTAA 1 cut(s) 150
MspI CCGG 2 cut(s) 361, 554
MspR9I CCNGG 2 cut(s) 361, 554
MunI CAATTG 1 cut(s) 163
MvnI CGCG 2 cut(s) 527, 547
MwoI GCNNNNNNNGC 1 cut(s) 573
NciI CCSGG 2 cut(s) 361, 554
NdeII GATC 4 cut(s) 426, 434, 444, 532
NlaIV GGNNCC 1 cut(s) 311
NmuCI GTSAC 1 cut(s) 247
PfeI GAWTC 2 cut(s) 368, 537
Pfl23II CGTACG 1 cut(s) 408
PkrI GCNGC 4 cut(s) 482, 518, 526, 546
Ple19I CGATCG 1 cut(s) 535
PleI GAGTC 1 cut(s) 135
PpsI GAGTC 1 cut(s) 135
Psp1406I AACGTT 1 cut(s) 116
PspLI CGTACG 1 cut(s) 408
PspN4I GGNNCC 1 cut(s) 311
PstNI CAGNNNCTG 1 cut(s) 62
PvuI CGATCG 1 cut(s) 535
RsaI GTAC 1 cut(s) 410
RsaNI GTAC 1 cut(s) 409
SaqAI TTAA 1 cut(s) 150
SatI GCNGC 4 cut(s) 481, 517, 525, 545
Sau3AI GATC 4 cut(s) 426, 434, 444, 532
SchI GAGTC 1 cut(s) 136
ScrFI CCNGG 2 cut(s) 361, 554
SduI GDGCHC 1 cut(s) 211
SetI ASST 9 cut(s) 64, 91, 119, 176, 229, 254, 414, 482, 518
SfaNI GCATC 2 cut(s) 124, 576
SfcI CTRYAG 1 cut(s) 314
SpeI ACTAGT 1 cut(s) 101
Sse9I AATT 1 cut(s) 163
SsiI CCGC 4 cut(s) 372, 387, 525, 545
SspMI CTAG 3 cut(s) 6, 29, 102
StyD4I CCNGG 2 cut(s) 359, 552
TaaI ACNGT 1 cut(s) 309
TaiI ACGT 2 cut(s) 119, 414
TaqI TCGA 6 cut(s) 132, 220, 425, 531, 535, 570
TasI AATT 1 cut(s) 163
TauI GCSGC 2 cut(s) 527, 547
TfiI GAWTC 2 cut(s) 368, 537
Tru1I TTAA 1 cut(s) 150
Tru9I TTAA 1 cut(s) 150
TscAI CASTG 2 cut(s) 328, 425
TseFI GTSAC 1 cut(s) 247
TseI GCWGC 2 cut(s) 480, 516
Tsp45I GTSAC 1 cut(s) 247
TspRI CASTG 2 cut(s) 328, 425
XspI CTAG 3 cut(s) 6, 29, 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.