Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003745.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

30546 .. 35711

Gene Structure 5166 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

atggtgttcaacccaagttatgaaaaatttggtgctctagttcttctcattctgtttagttttaatcttttggcaacccaagctcgaccaacaagcagttccaacttggctacgttgaggattggtggcggatatgttggtactggaggacggtactacaactctattctgagtccatcgtcactgacgaatcatgactcggagacaagcattgatatagcacatccaagacaggcacgtgataggatcaccattgtgagtaaggcacaatgtttgccatctcaacatgcacttacaaagtacaaagtgattggatcatcatgtcctggtttcacatggttagagctaattccacttactggtcgaaagcaccagctgcgcgtacactgtgcagaagttttgggaacaccaatagtcggagactacaaatatggatggcgaacgcataaggactggaaacctgttgcttggtctaagattgaaagccattccagtgaggggcattcgaagagaaaaaacattccttttgatctcaatatggacagtggaagtattgccgaaaagaatttgcgcttgcatcttcattctaagcaaatggttttgcctaatgtgtctcaggctttgcaaaatgtgaaactgcatgcggagtgtgatctttcaggactagaaagcctagaattggttgctcctatgccttcatacatgcaaaaaagttgggatattacaaattctggttttgatgggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001522 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009982 GO:0009987 GO:0010467 GO:0016070 GO:0016853 GO:0016866 GO:0031119 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_2

Protein Analysis

248

Amino Acids

27.52

Weight (kDa)

9.13

Isoelectric Point (pI)

45.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PseudoU_synth_2	PF00849	65 - 131	6.4e-07	RNA pseudouridylate synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	359
AccII	CGCG	1 cut(s)	381
AciI	CCGC	2 cut(s)	129, 644
AclWI	GGATC	2 cut(s)	254, 322
AcsI	RAATTY	3 cut(s)	26, 565, 727
AcvI	CACGTG	1 cut(s)	239
AfaI	GTAC	4 cut(s)	142, 155, 302, 384
AfiI	CCNNNNNNNGG	4 cut(s)	359, 416, 498, 679
AgsI	TTSAA	2 cut(s)	10, 482
AjnI	CCWGG	1 cut(s)	325
AjuI	GAANNNNNNNTTGG	2 cut(s)	82, 114
AleI	CACNNNNGTG	1 cut(s)	254
AluBI	AGCT	3 cut(s)	83, 346, 376
AluI	AGCT	3 cut(s)	83, 346, 376
Alw21I	GWGCWC	1 cut(s)	37
Alw26I	GTCTC	3 cut(s)	197, 414, 618
AlwI	GGATC	2 cut(s)	254, 322
ApeKI	GCWGC	1 cut(s)	376
ApoI	RAATTY	3 cut(s)	26, 565, 727
AspLEI	GCGC	2 cut(s)	381, 573
AsuHPI	GGTGA	1 cut(s)	241
AsuII	TTCGAA	1 cut(s)	506
BbrPI	CACGTG	1 cut(s)	239
Bbv12I	GWGCWC	1 cut(s)	37
BbvI	GCAGC	1 cut(s)	363
BccI	CCATC	4 cut(s)	184, 286, 429, 734
BciT130I	CCWGG	1 cut(s)	327
BcoDI	GTCTC	3 cut(s)	197, 414, 618
BfaI	CTAG	3 cut(s)	38, 665, 674
BisI	GCNGC	1 cut(s)	377
BlsI	GCNGC	1 cut(s)	378
Bme1390I	CCNGG	1 cut(s)	327
BmrFI	CCNGG	1 cut(s)	327
BmsI	GCATC	1 cut(s)	586
BpmI	CTGGAG	1 cut(s)	165
Bpu14I	TTCGAA	1 cut(s)	506
BsaAI	YACGTR	1 cut(s)	239
Bsc4I	CCNNNNNNNGG	4 cut(s)	359, 416, 498, 679
Bse1I	ACTGG	4 cut(s)	148, 364, 458, 492
BseBI	CCWGG	1 cut(s)	327
BseGI	GGATG	2 cut(s)	223, 440
BseLI	CCNNNNNNNGG	4 cut(s)	359, 416, 498, 679
BseMII	CTCAG	2 cut(s)	161, 629
BseNI	ACTGG	4 cut(s)	148, 364, 458, 492
BseXI	GCAGC	1 cut(s)	363
BsgI	GTGCAG	1 cut(s)	411
Bsh1236I	CGCG	1 cut(s)	381
BsiHKAI	GWGCWC	1 cut(s)	37
BslI	CCNNNNNNNGG	4 cut(s)	359, 416, 498, 679
BsmAI	GTCTC	3 cut(s)	197, 414, 618
BsmI	GAATGC	1 cut(s)	502
Bsp119I	TTCGAA	1 cut(s)	506
Bsp1286I	GDGCHC	1 cut(s)	37
Bsp143I	GATC	4 cut(s)	246, 314, 529, 652
BspACI	CCGC	2 cut(s)	129, 644
BspCNI	CTCAG	2 cut(s)	162, 628
BspFNI	CGCG	1 cut(s)	381
BspHI	TCATGA	1 cut(s)	193
BspPI	GGATC	2 cut(s)	254, 322
BspT104I	TTCGAA	1 cut(s)	506
BsrI	ACTGG	4 cut(s)	148, 364, 458, 492
BssMI	GATC	4 cut(s)	246, 314, 529, 652
Bst2UI	CCWGG	1 cut(s)	327
Bst4CI	ACNGT	3 cut(s)	153, 389, 545
Bst6I	CTCTTC	1 cut(s)	503
BstAPI	GCANNNNNTGC	1 cut(s)	376
BstBAI	YACGTR	1 cut(s)	239
BstBI	TTCGAA	1 cut(s)	506
BstC8I	GCNNGC	2 cut(s)	575, 642
BstDEI	CTNAG	4 cut(s)	170, 474, 588, 615
BstF5I	GGATG	2 cut(s)	223, 440
BstFNI	CGCG	1 cut(s)	381
BstHHI	GCGC	2 cut(s)	381, 573
BstKTI	GATC	4 cut(s)	249, 317, 532, 655
BstMAI	GTCTC	3 cut(s)	197, 414, 618
BstMBI	GATC	4 cut(s)	246, 314, 529, 652
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 376
BstNI	CCWGG	1 cut(s)	327
BstNSI	RCATGY	3 cut(s)	290, 644, 706
BstSCI	CCNGG	1 cut(s)	325
BstUI	CGCG	1 cut(s)	381
BstV1I	GCAGC	1 cut(s)	363
BtsCI	GGATG	2 cut(s)	223, 440
BtsIMutI	CAGTG	4 cut(s)	182, 385, 499, 550
Cac8I	GCNNGC	2 cut(s)	575, 642
CciI	TCATGA	1 cut(s)	193
CfoI	GCGC	2 cut(s)	381, 573
Csp6I	GTAC	4 cut(s)	141, 154, 301, 383
CviAII	CATG	6 cut(s)	194, 287, 321, 336, 641, 703
CviJI	RGCY	7 cut(s)	83, 110, 346, 376, 486, 620, 672
CviKI_1	RGCY	7 cut(s)	83, 110, 346, 376, 486, 620, 672
CviQI	GTAC	4 cut(s)	141, 154, 301, 383
DdeI	CTNAG	4 cut(s)	170, 474, 588, 615
DpnI	GATC	4 cut(s)	248, 316, 531, 654
DpnII	GATC	4 cut(s)	246, 314, 529, 652
Eam1104I	CTCTTC	1 cut(s)	503
EarI	CTCTTC	1 cut(s)	503
EciI	GGCGGA	1 cut(s)	144
Eco72I	CACGTG	1 cut(s)	239
EcoRII	CCWGG	1 cut(s)	325
FaeI	CATG	6 cut(s)	197, 290, 324, 339, 644, 706
FatI	CATG	6 cut(s)	193, 286, 320, 335, 640, 702
Fnu4HI	GCNGC	1 cut(s)	377
FokI	GGATG	2 cut(s)	210, 447
Fsp4HI	GCNGC	1 cut(s)	377
FspBI	CTAG	3 cut(s)	38, 665, 674
GlaI	GCGC	2 cut(s)	380, 572
GluI	GCNGC	1 cut(s)	377
GsuI	CTGGAG	1 cut(s)	165
HhaI	GCGC	2 cut(s)	381, 573
Hin1II	CATG	6 cut(s)	197, 290, 324, 339, 644, 706
Hin6I	GCGC	2 cut(s)	379, 571
HinP1I	GCGC	2 cut(s)	379, 571
HinfI	GANTC	3 cut(s)	172, 190, 197
HphI	GGTGA	1 cut(s)	241
Hpy166II	GTNNAC	1 cut(s)	385
Hpy188I	TCNGA	3 cut(s)	171, 202, 419
Hpy188III	TCNNGA	2 cut(s)	194, 660
Hpy8I	GTNNAC	1 cut(s)	385
HpyAV	CCTTC	1 cut(s)	705
HpyCH4III	ACNGT	3 cut(s)	153, 389, 545
HpyCH4IV	ACGT	2 cut(s)	113, 238
HpyCH4V	TGCA	6 cut(s)	290, 392, 577, 625, 640, 706
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 376
HpyF3I	CTNAG	4 cut(s)	170, 474, 588, 615
HpySE526I	ACGT	2 cut(s)	113, 238
Hsp92II	CATG	6 cut(s)	197, 290, 324, 339, 644, 706
HspAI	GCGC	2 cut(s)	379, 571
Kzo9I	GATC	4 cut(s)	246, 314, 529, 652
LmnI	GCTCC	1 cut(s)	691
Lsp1109I	GCAGC	1 cut(s)	363
LweI	GCATC	1 cut(s)	586
MaeI	CTAG	3 cut(s)	38, 665, 674
MaeII	ACGT	2 cut(s)	113, 238
MaeIII	GTNAC	1 cut(s)	180
MalI	GATC	4 cut(s)	248, 316, 531, 654
MboI	GATC	4 cut(s)	246, 314, 529, 652
MboII	GAAGA	3 cut(s)	35, 520, 572
MhlI	GDGCHC	1 cut(s)	37
MluCI	AATT	5 cut(s)	26, 348, 565, 677, 727
MlyI	GAGTC	2 cut(s)	181, 191
MmeI	TCCRAC	2 cut(s)	126, 397
MnlI	CCTC	3 cut(s)	111, 140, 490
MseI	TTAA	1 cut(s)	63
MslI	CAYNNNNRTG	2 cut(s)	254, 492
MspA1I	CMGCKG	1 cut(s)	376
MspR9I	CCNGG	1 cut(s)	327
Mva1269I	GAATGC	1 cut(s)	502
MvaI	CCWGG	1 cut(s)	327
MvnI	CGCG	1 cut(s)	381
MwoI	GCNNNNNNNGC	2 cut(s)	80, 376
NdeII	GATC	4 cut(s)	246, 314, 529, 652
NlaIII	CATG	6 cut(s)	197, 290, 324, 339, 644, 706
NmuCI	GTSAC	1 cut(s)	180
NspI	RCATGY	3 cut(s)	290, 644, 706
NspV	TTCGAA	1 cut(s)	506
OliI	CACNNNNGTG	1 cut(s)	254
PaeI	GCATGC	1 cut(s)	644
PagI	TCATGA	1 cut(s)	193
PcsI	WCGNNNNNNNCGW	1 cut(s)	185
PctI	GAATGC	1 cut(s)	502
PfeI	GAWTC	1 cut(s)	190
PflMI	CCANNNNNTGG	1 cut(s)	359
PkrI	GCNGC	1 cut(s)	378
PleI	GAGTC	2 cut(s)	180, 191
PmaCI	CACGTG	1 cut(s)	239
PmlI	CACGTG	1 cut(s)	239
PpsI	GAGTC	2 cut(s)	180, 191
Ppu21I	YACGTR	1 cut(s)	239
Psp6I	CCWGG	1 cut(s)	325
PspCI	CACGTG	1 cut(s)	239
PspGI	CCWGG	1 cut(s)	325
PvuII	CAGCTG	1 cut(s)	376
RsaI	GTAC	4 cut(s)	142, 155, 302, 384
RsaNI	GTAC	4 cut(s)	141, 154, 301, 383
RseI	CAYNNNNRTG	2 cut(s)	254, 492
SaqAI	TTAA	1 cut(s)	63
SatI	GCNGC	1 cut(s)	377
Sau3AI	GATC	4 cut(s)	246, 314, 529, 652
SchI	GAGTC	2 cut(s)	181, 191
ScrFI	CCNGG	1 cut(s)	327
SduI	GDGCHC	1 cut(s)	37
SetI	ASST	6 cut(s)	85, 116, 241, 348, 378, 463
SfaNI	GCATC	1 cut(s)	586
SfuI	TTCGAA	1 cut(s)	506
SmiMI	CAYNNNNRTG	2 cut(s)	254, 492
SphI	GCATGC	1 cut(s)	644
Sse9I	AATT	5 cut(s)	26, 348, 565, 677, 727
SsiI	CCGC	2 cut(s)	129, 644
SspMI	CTAG	3 cut(s)	38, 665, 674
StyD4I	CCNGG	1 cut(s)	325
TaaI	ACNGT	3 cut(s)	153, 389, 545
TaiI	ACGT	2 cut(s)	116, 241
TaqI	TCGA	3 cut(s)	85, 364, 506
TasI	AATT	5 cut(s)	26, 348, 565, 677, 727
TatI	WGTACW	1 cut(s)	300
TfiI	GAWTC	1 cut(s)	190
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TscAI	CASTG	4 cut(s)	189, 392, 499, 550
TseFI	GTSAC	1 cut(s)	180
TseI	GCWGC	1 cut(s)	376
Tsp45I	GTSAC	1 cut(s)	180
TspDTI	ATGAA	3 cut(s)	36, 572, 687
TspRI	CASTG	4 cut(s)	189, 392, 499, 550
Van91I	CCANNNNNTGG	1 cut(s)	359
XapI	RAATTY	3 cut(s)	26, 565, 727
XceI	RCATGY	3 cut(s)	290, 644, 706
XspI	CTAG	3 cut(s)	38, 665, 674

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.