Rmu_sc0003758.1_g000013

(2R)-phospho-3-sulfolactate synthase (ComA)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003758.1
N/A
Physical Location & Seq
Forward (+)
39325 .. 42435
3111 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 567 bp
atgaccaaaacagaaacaggaagacttgagaaatacaaaggtcacacatgcttattgtcacgggccaactttgcgatgcgcaaagaggaccgtgcgaggcacttgcaagtaagcaagtcagccaagcattttggaataaattgggctttgcttgatccaaagaccttggttgaagttcattgtttctgtcaaggagttgctgccatgggtcatgatgcctcttcaggtagtgatattttcgagtcgataggcaacattgtgtatgggctgaagtttgctggaggttcgcataacttgatgccaaagccgtttgtgaaagaggtgattgatgtggagtgtaagagcttgggatttgacacgattgagctgaatgtgggatctctcggagtgcctgctgaggaaacgcttctgagacctgtgcgcttgattaagagcggtggcttgaaagtgaagcctctgtttgaagtcaaggttaacgagtctgacattcctattggtgatagagcgtttggagcctatgtcgtcccgagaccaagatcatctggtatgctatgcactctttcctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ComA

Protein Analysis

188

Amino Acids

20.53

Weight (kDa)

8.98

Isoelectric Point (pI)

32.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 80
AccBSI CCGCTC 1 cut(s) 435
AciI CCGC 1 cut(s) 435
AclWI GGATC 2 cut(s) 149, 385
AcuI CTGAAG 2 cut(s) 207, 290
AgsI TTSAA 3 cut(s) 173, 445, 464
AluBI AGCT 2 cut(s) 345, 367
AluI AGCT 2 cut(s) 345, 367
Alw26I GTCTC 2 cut(s) 406, 523
AlwI GGATC 2 cut(s) 149, 385
Ama87I CYCGRG 1 cut(s) 526
AoxI GGCC 1 cut(s) 63
ApeKI GCWGC 1 cut(s) 200
Asp700I GAANNNNTTC 1 cut(s) 405
AspLEI GCGC 2 cut(s) 81, 423
AspS9I GGNCC 2 cut(s) 63, 88
AsuHPI GGTGA 2 cut(s) 334, 509
AvaI CYCGRG 1 cut(s) 526
AvaII GGWCC 1 cut(s) 88
BbsI GAAGAC 1 cut(s) 28
BbvCI CCTCAGC 1 cut(s) 396
BbvI GCAGC 1 cut(s) 187
BceAI ACGGC 1 cut(s) 292
BcgI CGANNNNNNTGC 2 cut(s) 85, 119
BcoDI GTCTC 2 cut(s) 406, 523
BisI GCNGC 1 cut(s) 201
BlsI GCNGC 1 cut(s) 202
Bme18I GGWCC 1 cut(s) 88
BmeT110I CYCGRG 1 cut(s) 526
BmgT120I GGNCC 2 cut(s) 63, 88
BmiI GGNNCC 1 cut(s) 514
BmsI GCATC 3 cut(s) 66, 205, 288
BpiI GAAGAC 1 cut(s) 28
BpmI CTGGAG 1 cut(s) 300
Bpu10I CCTNAGC 1 cut(s) 396
BpuEI CTTGAG 1 cut(s) 47
BsaI GGTCTC 2 cut(s) 406, 523
BsaJI CCNNGG 2 cut(s) 165, 204
BsaXI ACNNNNNCTCC 2 cut(s) 504, 534
BseDI CCNNGG 2 cut(s) 165, 204
BseMII CTCAG 2 cut(s) 387, 401
BseXI GCAGC 1 cut(s) 187
BshFI GGCC 1 cut(s) 65
BsiHKCI CYCGRG 1 cut(s) 526
BslFI GGGAC 1 cut(s) 509
BsmAI GTCTC 2 cut(s) 406, 523
BsmFI GGGAC 1 cut(s) 509
BsnI GGCC 1 cut(s) 65
Bso31I GGTCTC 2 cut(s) 406, 523
BsoBI CYCGRG 1 cut(s) 526
Bsp143I GATC 3 cut(s) 154, 377, 536
Bsp19I CCATGG 1 cut(s) 204
BspACI CCGC 1 cut(s) 435
BspANI GGCC 1 cut(s) 65
BspCNI CTCAG 2 cut(s) 388, 402
BspHI TCATGA 1 cut(s) 211
BspLI GGNNCC 1 cut(s) 514
BspPI GGATC 2 cut(s) 149, 385
BspTNI GGTCTC 2 cut(s) 406, 523
BsrBI CCGCTC 1 cut(s) 435
BssECI CCNNGG 2 cut(s) 165, 204
BssMI GATC 3 cut(s) 154, 377, 536
BssT1I CCWWGG 2 cut(s) 165, 204
Bst4CI ACNGT 1 cut(s) 92
Bst6I CTCTTC 1 cut(s) 226
BstC8I GCNNGC 1 cut(s) 393
BstDEI CTNAG 2 cut(s) 396, 410
BstDSI CCRYGG 1 cut(s) 204
BstHHI GCGC 2 cut(s) 81, 423
BstKTI GATC 3 cut(s) 157, 380, 539
BstMAI GTCTC 2 cut(s) 406, 523
BstMBI GATC 3 cut(s) 154, 377, 536
BstMWI GCNNNNNNNGC 2 cut(s) 71, 512
BstNSI RCATGY 1 cut(s) 51
BstV1I GCAGC 1 cut(s) 187
BstV2I GAAGAC 1 cut(s) 28
BstX2I RGATCY 1 cut(s) 377
BstYI RGATCY 1 cut(s) 377
BsuRI GGCC 1 cut(s) 65
BtgI CCRYGG 1 cut(s) 204
BtgZI GCGATG 1 cut(s) 89
Cac8I GCNNGC 1 cut(s) 393
CciI TCATGA 1 cut(s) 211
CfoI GCGC 2 cut(s) 81, 423
Cfr13I GGNCC 2 cut(s) 63, 88
CviAII CATG 3 cut(s) 48, 205, 212
DdeI CTNAG 2 cut(s) 396, 410
DpnI GATC 3 cut(s) 156, 379, 538
DpnII GATC 3 cut(s) 154, 377, 536
Eam1104I CTCTTC 1 cut(s) 226
EarI CTCTTC 1 cut(s) 226
Eco130I CCWWGG 2 cut(s) 165, 204
Eco31I GGTCTC 2 cut(s) 406, 523
Eco47I GGWCC 1 cut(s) 88
Eco57I CTGAAG 2 cut(s) 207, 290
Eco88I CYCGRG 1 cut(s) 526
EcoT14I CCWWGG 2 cut(s) 165, 204
ErhI CCWWGG 2 cut(s) 165, 204
FaeI CATG 3 cut(s) 51, 208, 215
FaiI YATR 8 cut(s) 49, 206, 213, 264, 291, 519, 548, 553
FaqI GGGAC 1 cut(s) 509
FatI CATG 3 cut(s) 47, 204, 211
Fnu4HI GCNGC 1 cut(s) 201
Fsp4HI GCNGC 1 cut(s) 201
FspI TGCGCA 1 cut(s) 80
GlaI GCGC 2 cut(s) 80, 422
GluI GCNGC 1 cut(s) 201
GsuI CTGGAG 1 cut(s) 300
HaeIII GGCC 1 cut(s) 65
HhaI GCGC 2 cut(s) 81, 423
Hin1II CATG 3 cut(s) 51, 208, 215
Hin6I GCGC 2 cut(s) 79, 421
HinP1I GCGC 2 cut(s) 79, 421
HincII GTYRAC 1 cut(s) 475
HindII GTYRAC 1 cut(s) 475
HinfI GANTC 2 cut(s) 242, 479
HpaI GTTAAC 1 cut(s) 475
HphI GGTGA 2 cut(s) 334, 509
Hpy166II GTNNAC 1 cut(s) 475
Hpy188I TCNGA 3 cut(s) 386, 411, 484
Hpy188III TCNNGA 3 cut(s) 212, 526, 564
Hpy8I GTNNAC 1 cut(s) 475
HpyCH4III ACNGT 1 cut(s) 92
HpyCH4V TGCA 2 cut(s) 106, 555
HpyF10VI GCNNNNNNNGC 2 cut(s) 71, 512
HpyF3I CTNAG 2 cut(s) 396, 410
Hsp92II CATG 3 cut(s) 51, 208, 215
HspAI GCGC 2 cut(s) 79, 421
KspAI GTTAAC 1 cut(s) 475
Kzo9I GATC 3 cut(s) 154, 377, 536
LmnI GCTCC 1 cut(s) 512
LpnPI CCDG 6 cut(s) 3, 210, 264, 405, 429, 528
Lsp1109I GCAGC 1 cut(s) 187
LweI GCATC 3 cut(s) 66, 205, 288
MaeIII GTNAC 2 cut(s) 41, 57
MalI GATC 3 cut(s) 156, 379, 538
MbiI CCGCTC 1 cut(s) 435
MboI GATC 3 cut(s) 154, 377, 536
MboII GAAGA 2 cut(s) 33, 213
MflI RGATCY 1 cut(s) 377
MluCI AATT 1 cut(s) 139
MlyI GAGTC 2 cut(s) 251, 488
MnlI CCTC 7 cut(s) 79, 90, 229, 275, 313, 391, 465
MroXI GAANNNNTTC 1 cut(s) 405
MseI TTAA 2 cut(s) 429, 474
MwoI GCNNNNNNNGC 2 cut(s) 71, 512
NcoI CCATGG 1 cut(s) 204
NdeII GATC 3 cut(s) 154, 377, 536
NlaIII CATG 3 cut(s) 51, 208, 215
NlaIV GGNNCC 1 cut(s) 514
NmuCI GTSAC 2 cut(s) 41, 57
NsbI TGCGCA 1 cut(s) 80
NspI RCATGY 1 cut(s) 51
PagI TCATGA 1 cut(s) 211
PdmI GAANNNNTTC 1 cut(s) 405
PkrI GCNGC 1 cut(s) 202
PleI GAGTC 2 cut(s) 250, 487
PpsI GAGTC 2 cut(s) 250, 487
PspN4I GGNNCC 1 cut(s) 514
PspPI GGNCC 2 cut(s) 63, 88
PsuI RGATCY 1 cut(s) 377
SaqAI TTAA 2 cut(s) 429, 474
SatI GCNGC 1 cut(s) 201
Sau3AI GATC 3 cut(s) 154, 377, 536
Sau96I GGNCC 2 cut(s) 63, 88
SchI GAGTC 2 cut(s) 251, 488
SetI ASST 9 cut(s) 43, 167, 229, 286, 324, 347, 369, 418, 474
SfaNI GCATC 3 cut(s) 66, 205, 288
SinI GGWCC 1 cut(s) 88
SmlI CTYRAG 1 cut(s) 26
SmoI CTYRAG 1 cut(s) 26
Sse9I AATT 1 cut(s) 139
SsiI CCGC 1 cut(s) 435
StyI CCWWGG 2 cut(s) 165, 204
TaaI ACNGT 1 cut(s) 92
TaqI TCGA 2 cut(s) 240, 245
TasI AATT 1 cut(s) 139
Tru1I TTAA 2 cut(s) 429, 474
Tru9I TTAA 2 cut(s) 429, 474
TseFI GTSAC 2 cut(s) 41, 57
TseI GCWGC 1 cut(s) 200
Tsp45I GTSAC 2 cut(s) 41, 57
TspDTI ATGAA 1 cut(s) 167
VpaK11BI GGWCC 1 cut(s) 88
XceI RCATGY 1 cut(s) 51
XmnI GAANNNNTTC 1 cut(s) 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.