Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003787.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

19109 .. 23124

Gene Structure 4016 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

atgcaggagtcttcggcaaggcgcggcagcaggtgggcagggacgcaggtagggcgcgggcttgtagggacgcaggctcgcaggtgggctggcagggatgcaggcaggccgctggctgctcggatctgcaaggcgcgggactgctgggcggggcagaggcgagttggactaaggctgcgcagggatggtttaggcaggcgaggagttgcacgggggcagtgtgctgctatgctagcaagggaggccgatgttgtgcgcgcaagtgggtggtggcgtgggctagactggaggccggtgggcatgttttcacagactcatatcatgaagacatacccggttgagctagtttgggcattgttatacaacttgtttggaaccattatatcagcaccagtctgtttattcatagccgaaacaaacttaagtgcctggagactacggcctggcgtagcattgattgccattatatactcggggttcattatttcagcgttcagcaccattgtttcgacatggagcctaaacttgaagggtcctgtgtatgtgtcaatcttcaagccattgtcgattggcattgctgccgcatccagtgtcatattcctcggcgatgatctctttctcggcagtgtttttggagctgtaatgatatccatagggttttatggtgtaatatggggacagtcaaaggaagaagaaatgagagatcaagactatgagtttgatagcttgacagggttacatagcgccgaatcggcgaagatgttgccgaaattttcgaaatcgcaaaagctctctttgaaaacaacgactccggttgcggcccgggaccagagatacaatcaagttgcgatttccgtccagcccggcctcgccgagcttctcagccaagaggaccgtcggcttagagtcgagcctggccgcggagagcacaacaacgacgaggcgatggtgagagccggcatcgtagagggagggagggagggagggagggagagagggagagagagagggagggagggaccgagcttctcagccaagaggaccgtcggcttagagtcgagcctggccgcggagagcacaacaacgacgaggcgatggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

366

Amino Acids

40.31

Weight (kDa)

10.34

Isoelectric Point (pI)

40.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	21, 72
Acc16I	TGCGCA	1 cut(s)	179
Acc36I	ACCTGC	3 cut(s)	21, 37, 72
AccII	CGCG	6 cut(s)	24, 57, 136, 258, 921, 1070
AclWI	GGATC	1 cut(s)	131
AcoI	YGGCCR	2 cut(s)	916, 1065
AcsI	RAATTY	1 cut(s)	770
AfiI	CCNNNNNNNGG	2 cut(s)	920, 1069
AflII	CTTAAG	1 cut(s)	421
AgsI	TTSAA	3 cut(s)	529, 556, 799
AjnI	CCWGG	4 cut(s)	428, 442, 913, 1062
AluBI	AGCT	6 cut(s)	343, 638, 726, 790, 877, 1026
AluI	AGCT	6 cut(s)	343, 638, 726, 790, 877, 1026
Alw21I	GWGCWC	2 cut(s)	930, 1079
Alw26I	GTCTC	1 cut(s)	427
AlwI	GGATC	1 cut(s)	131
Ama87I	CYCGRG	2 cut(s)	472, 822
AoxI	GGCC	8 cut(s)	107, 243, 290, 440, 819, 865, 916, 1065
ApeKI	GCWGC	5 cut(s)	27, 116, 175, 224, 578
ApoI	RAATTY	1 cut(s)	770
ArsI	GACNNNNNNTTYG	2 cut(s)	701, 733
AspLEI	GCGC	7 cut(s)	24, 57, 136, 180, 258, 260, 746
AspS9I	GGNCC	6 cut(s)	533, 820, 826, 892, 1019, 1041
AsuC2I	CCSGG	4 cut(s)	335, 823, 824, 864
AsuHPI	GGTGA	1 cut(s)	961
AsuII	TTCGAA	1 cut(s)	776
AsuNHI	GCTAGC	1 cut(s)	232
AvaI	CYCGRG	2 cut(s)	472, 822
AvaII	GGWCC	5 cut(s)	533, 826, 892, 1019, 1041
BbsI	GAAGAC	2 cut(s)	3, 332
Bbv12I	GWGCWC	2 cut(s)	930, 1079
BbvI	GCAGC	5 cut(s)	39, 103, 162, 211, 565
BccI	CCATC	3 cut(s)	179, 940, 1089
BceAI	ACGGC	1 cut(s)	455
BcgI	CGANNNNNNTGC	2 cut(s)	745, 779
BciT130I	CCWGG	4 cut(s)	430, 444, 915, 1064
BcnI	CCSGG	4 cut(s)	335, 823, 824, 864
BcoDI	GTCTC	1 cut(s)	427
BfaI	CTAG	3 cut(s)	233, 281, 344
BfoI	RGCGCY	1 cut(s)	747
BfrI	CTTAAG	1 cut(s)	421
BfuAI	ACCTGC	3 cut(s)	21, 37, 72
BglI	GCCNNNNNGGC	1 cut(s)	752
Bme1390I	CCNGG	8 cut(s)	335, 430, 444, 823, 824, 864, 915, 1064
Bme18I	GGWCC	5 cut(s)	533, 826, 892, 1019, 1041
BmeT110I	CYCGRG	2 cut(s)	472, 822
BmgT120I	GGNCC	6 cut(s)	533, 820, 826, 892, 1019, 1041
BmiI	GGNNCC	5 cut(s)	376, 518, 534, 827, 1020
BmrFI	CCNGG	8 cut(s)	335, 430, 444, 823, 824, 864, 915, 1064
BmsI	GCATC	3 cut(s)	88, 593, 969
BmtI	GCTAGC	1 cut(s)	236
BpiI	GAAGAC	2 cut(s)	3, 332
BpmI	CTGGAG	2 cut(s)	307, 451
Bpu14I	TTCGAA	1 cut(s)	776
BpuMI	CCSGG	4 cut(s)	335, 823, 824, 864
BsaJI	CCNNGG	4 cut(s)	601, 822, 919, 1068
BsaWI	WCCGGW	1 cut(s)	811
BsaXI	ACNNNNNCTCC	2 cut(s)	793, 823
Bsc4I	CCNNNNNNNGG	2 cut(s)	920, 1069
Bse118I	RCCGGY	2 cut(s)	292, 956
Bse1I	ACTGG	3 cut(s)	290, 392, 588
Bse3DI	GCAATG	1 cut(s)	573
BseBI	CCWGG	4 cut(s)	430, 444, 915, 1064
BseDI	CCNNGG	4 cut(s)	601, 822, 919, 1068
BseGI	GGATG	3 cut(s)	103, 190, 584
BseLI	CCNNNNNNNGG	2 cut(s)	920, 1069
BseMI	GCAATG	1 cut(s)	573
BseMII	CTCAG	2 cut(s)	895, 1044
BseNI	ACTGG	3 cut(s)	290, 392, 588
BsePI	GCGCGC	1 cut(s)	256
BseRI	GAGGAG	1 cut(s)	216
BseXI	GCAGC	5 cut(s)	39, 103, 162, 211, 565
BseYI	CCCAGC	1 cut(s)	144
Bsh1236I	CGCG	6 cut(s)	24, 57, 136, 258, 921, 1070
BshFI	GGCC	8 cut(s)	109, 245, 292, 442, 821, 867, 918, 1067
BsiHKAI	GWGCWC	2 cut(s)	930, 1079
BsiHKCI	CYCGRG	2 cut(s)	472, 822
BsiSI	CCGG	6 cut(s)	293, 335, 812, 823, 864, 957
BslFI	GGGAC	6 cut(s)	55, 82, 152, 690, 839, 1032
BslI	CCNNNNNNNGG	2 cut(s)	920, 1069
BsmAI	GTCTC	1 cut(s)	427
BsmFI	GGGAC	6 cut(s)	55, 82, 152, 690, 839, 1032
BsnI	GGCC	8 cut(s)	109, 245, 292, 442, 821, 867, 918, 1067
BsoBI	CYCGRG	2 cut(s)	472, 822
Bsp119I	TTCGAA	1 cut(s)	776
Bsp1286I	GDGCHC	2 cut(s)	930, 1079
Bsp143I	GATC	3 cut(s)	123, 610, 703
BspANI	GGCC	8 cut(s)	109, 245, 292, 442, 821, 867, 918, 1067
BspCNI	CTCAG	2 cut(s)	894, 1043
BspFNI	CGCG	6 cut(s)	24, 57, 136, 258, 921, 1070
BspHI	TCATGA	1 cut(s)	321
BspLI	GGNNCC	5 cut(s)	376, 518, 534, 827, 1020
BspMI	ACCTGC	3 cut(s)	21, 37, 72
BspOI	GCTAGC	1 cut(s)	236
BspPI	GGATC	1 cut(s)	131
BspT104I	TTCGAA	1 cut(s)	776
BspTI	CTTAAG	1 cut(s)	421
BsrDI	GCAATG	1 cut(s)	573
BsrFI	RCCGGY	2 cut(s)	292, 956
BsrI	ACTGG	3 cut(s)	290, 392, 588
BssAI	RCCGGY	2 cut(s)	292, 956
BssECI	CCNNGG	4 cut(s)	601, 822, 919, 1068
BssHII	GCGCGC	1 cut(s)	256
BssMI	GATC	3 cut(s)	123, 610, 703
Bst2UI	CCWGG	4 cut(s)	430, 444, 915, 1064
Bst4CI	ACNGT	3 cut(s)	681, 896, 1045
BstAFI	CTTAAG	1 cut(s)	421
BstAPI	GCANNNNNTGC	1 cut(s)	458
BstBI	TTCGAA	1 cut(s)	776
BstDEI	CTNAG	5 cut(s)	170, 881, 902, 1030, 1051
BstDSI	CCRYGG	2 cut(s)	919, 1068
BstF5I	GGATG	3 cut(s)	103, 190, 584
BstFNI	CGCG	6 cut(s)	24, 57, 136, 258, 921, 1070
BstH2I	RGCGCY	1 cut(s)	747
BstHHI	GCGC	7 cut(s)	24, 57, 136, 180, 258, 260, 746
BstKTI	GATC	3 cut(s)	126, 613, 706
BstMAI	GTCTC	1 cut(s)	427
BstMBI	GATC	3 cut(s)	123, 610, 703
BstMWI	GCNNNNNNNGC	5 cut(s)	52, 233, 242, 458, 752
BstNI	CCWGG	4 cut(s)	430, 444, 915, 1064
BstNSI	RCATGY	1 cut(s)	304
BstSCI	CCNGG	8 cut(s)	333, 428, 442, 821, 822, 862, 913, 1062
BstUI	CGCG	6 cut(s)	24, 57, 136, 258, 921, 1070
BstV1I	GCAGC	5 cut(s)	39, 103, 162, 211, 565
BstV2I	GAAGAC	2 cut(s)	3, 332
BstX2I	RGATCY	1 cut(s)	123
BstYI	RGATCY	1 cut(s)	123
BsuRI	GGCC	8 cut(s)	109, 245, 292, 442, 821, 867, 918, 1067
BtgI	CCRYGG	2 cut(s)	919, 1068
BtgZI	GCGATG	2 cut(s)	621, 959
BtsCI	GGATG	3 cut(s)	103, 190, 584
BtsI	GCAGTG	2 cut(s)	224, 631
BtsIMutI	CAGTG	3 cut(s)	224, 595, 631
BveI	ACCTGC	3 cut(s)	21, 37, 72
CciI	TCATGA	1 cut(s)	321
CfoI	GCGC	7 cut(s)	24, 57, 136, 180, 258, 260, 746
Cfr10I	RCCGGY	2 cut(s)	292, 956
Cfr13I	GGNCC	6 cut(s)	533, 820, 826, 892, 1019, 1041
Cfr42I	CCGCGG	2 cut(s)	922, 1071
Cfr9I	CCCGGG	1 cut(s)	822
CseI	GACGC	2 cut(s)	52, 79
CviAII	CATG	3 cut(s)	301, 322, 513
DdeI	CTNAG	5 cut(s)	170, 881, 902, 1030, 1051
DpnI	GATC	3 cut(s)	125, 612, 705
DpnII	GATC	3 cut(s)	123, 610, 703
EaeI	YGGCCR	2 cut(s)	916, 1065
Eco32I	GATATC	1 cut(s)	648
Eco47I	GGWCC	5 cut(s)	533, 826, 892, 1019, 1041
Eco88I	CYCGRG	2 cut(s)	472, 822
EcoO109I	RGGNCCY	1 cut(s)	533
EcoRII	CCWGG	4 cut(s)	428, 442, 913, 1062
EcoRV	GATATC	1 cut(s)	648
FaeI	CATG	3 cut(s)	304, 325, 516
FaqI	GGGAC	6 cut(s)	55, 82, 152, 690, 839, 1032
FatI	CATG	3 cut(s)	300, 321, 512
FauI	CCCGC	3 cut(s)	50, 129, 142
FokI	GGATG	3 cut(s)	110, 197, 571
FspBI	CTAG	3 cut(s)	233, 281, 344
FspI	TGCGCA	1 cut(s)	179
GlaI	GCGC	7 cut(s)	23, 56, 135, 179, 257, 259, 745
GsaI	CCCAGC	1 cut(s)	148
GsuI	CTGGAG	2 cut(s)	307, 451
HaeII	RGCGCY	1 cut(s)	747
HaeIII	GGCC	8 cut(s)	109, 245, 292, 442, 821, 867, 918, 1067
HapII	CCGG	6 cut(s)	293, 335, 812, 823, 864, 957
HgaI	GACGC	2 cut(s)	52, 79
HhaI	GCGC	7 cut(s)	24, 57, 136, 180, 258, 260, 746
Hin1II	CATG	3 cut(s)	304, 325, 516
Hin6I	GCGC	7 cut(s)	22, 55, 134, 178, 256, 258, 744
HinP1I	GCGC	7 cut(s)	22, 55, 134, 178, 256, 258, 744
HinfI	GANTC	6 cut(s)	8, 313, 749, 808, 906, 1055
HpaII	CCGG	6 cut(s)	293, 335, 812, 823, 864, 957
HphI	GGTGA	1 cut(s)	961
Hpy188I	TCNGA	1 cut(s)	123
Hpy188III	TCNNGA	2 cut(s)	322, 707
Hpy99I	CGWCG	4 cut(s)	900, 941, 1049, 1090
HpyAV	CCTTC	1 cut(s)	523
HpyCH4III	ACNGT	3 cut(s)	681, 896, 1045
HpyCH4V	TGCA	4 cut(s)	4, 101, 129, 209
HpyF10VI	GCNNNNNNNGC	5 cut(s)	52, 233, 242, 458, 752
HpyF3I	CTNAG	5 cut(s)	170, 881, 902, 1030, 1051
Hsp92II	CATG	3 cut(s)	304, 325, 516
HspAI	GCGC	7 cut(s)	22, 55, 134, 178, 256, 258, 744
KroI	GCCGGC	1 cut(s)	956
KroNI	GCCGGC	1 cut(s)	958
KspI	CCGCGG	2 cut(s)	922, 1071
Kzo9I	GATC	3 cut(s)	123, 610, 703
LmnI	GCTCC	2 cut(s)	516, 635
Lsp1109I	GCAGC	5 cut(s)	39, 103, 162, 211, 565
LweI	GCATC	3 cut(s)	88, 593, 969
MaeI	CTAG	3 cut(s)	233, 281, 344
MaeIII	GTNAC	1 cut(s)	735
MalI	GATC	3 cut(s)	125, 612, 705
MboI	GATC	3 cut(s)	123, 610, 703
MboII	GAAGA	6 cut(s)	3, 337, 544, 701, 704, 769
MflI	RGATCY	1 cut(s)	123
MhlI	GDGCHC	2 cut(s)	930, 1079
MluCI	AATT	1 cut(s)	770
MlyI	GAGTC	5 cut(s)	17, 307, 802, 915, 1064
MmeI	TCCRAC	1 cut(s)	145
MroNI	GCCGGC	1 cut(s)	956
MseI	TTAA	1 cut(s)	422
MspA1I	CMGCKG	3 cut(s)	112, 921, 1070
MspCI	CTTAAG	1 cut(s)	421
MspI	CCGG	6 cut(s)	293, 335, 812, 823, 864, 957
MspR9I	CCNGG	8 cut(s)	335, 430, 444, 823, 824, 864, 915, 1064
MvaI	CCWGG	4 cut(s)	430, 444, 915, 1064
MvnI	CGCG	6 cut(s)	24, 57, 136, 258, 921, 1070
MwoI	GCNNNNNNNGC	5 cut(s)	52, 233, 242, 458, 752
NaeI	GCCGGC	1 cut(s)	958
NciI	CCSGG	4 cut(s)	335, 823, 824, 864
NdeII	GATC	3 cut(s)	123, 610, 703
NgoMIV	GCCGGC	1 cut(s)	956
NheI	GCTAGC	1 cut(s)	232
NlaIII	CATG	3 cut(s)	304, 325, 516
NlaIV	GGNNCC	5 cut(s)	376, 518, 534, 827, 1020
NmeAIII	GCCGAG	3 cut(s)	582, 600, 898
NsbI	TGCGCA	1 cut(s)	179
NspI	RCATGY	1 cut(s)	304
NspV	TTCGAA	1 cut(s)	776
PagI	TCATGA	1 cut(s)	321
PaqCI	CACCTGC	2 cut(s)	21, 72
PauI	GCGCGC	1 cut(s)	256
PdiI	GCCGGC	1 cut(s)	958
PfeI	GAWTC	1 cut(s)	749
PleI	GAGTC	5 cut(s)	16, 307, 802, 914, 1063
PpsI	GAGTC	5 cut(s)	16, 307, 802, 914, 1063
PpuMI	RGGWCCY	1 cut(s)	533
Psp5II	RGGWCCY	1 cut(s)	533
Psp6I	CCWGG	4 cut(s)	428, 442, 913, 1062
PspFI	CCCAGC	1 cut(s)	144
PspGI	CCWGG	4 cut(s)	428, 442, 913, 1062
PspN4I	GGNNCC	5 cut(s)	376, 518, 534, 827, 1020
PspPI	GGNCC	6 cut(s)	533, 820, 826, 892, 1019, 1041
PspPPI	RGGWCCY	1 cut(s)	533
PsuI	RGATCY	1 cut(s)	123
PteI	GCGCGC	1 cut(s)	256
SacII	CCGCGG	2 cut(s)	922, 1071
SaqAI	TTAA	1 cut(s)	422
Sau3AI	GATC	3 cut(s)	123, 610, 703
Sau96I	GGNCC	6 cut(s)	533, 820, 826, 892, 1019, 1041
SchI	GAGTC	5 cut(s)	17, 307, 802, 915, 1064
ScrFI	CCNGG	8 cut(s)	335, 430, 444, 823, 824, 864, 915, 1064
SduI	GDGCHC	2 cut(s)	930, 1079
SetI	ASST	9 cut(s)	35, 51, 86, 345, 640, 728, 792, 879, 1028
SfaNI	GCATC	3 cut(s)	88, 593, 969
Sfr303I	CCGCGG	2 cut(s)	922, 1071
SfuI	TTCGAA	1 cut(s)	776
SgrBI	CCGCGG	2 cut(s)	922, 1071
SinI	GGWCC	5 cut(s)	533, 826, 892, 1019, 1041
SmaI	CCCGGG	1 cut(s)	824
SmlI	CTYRAG	1 cut(s)	421
SmoI	CTYRAG	1 cut(s)	421
Sse9I	AATT	1 cut(s)	770
SspMI	CTAG	3 cut(s)	233, 281, 344
StyD4I	CCNGG	8 cut(s)	333, 428, 442, 821, 822, 862, 913, 1062
TaaI	ACNGT	3 cut(s)	681, 896, 1045
TaqI	TCGA	5 cut(s)	509, 566, 776, 909, 1058
TaqII	GACCGA	1 cut(s)	1036
TasI	AATT	1 cut(s)	770
TauI	GCSGC	6 cut(s)	27, 112, 584, 821, 921, 1070
TfiI	GAWTC	1 cut(s)	749
Tru1I	TTAA	1 cut(s)	422
Tru9I	TTAA	1 cut(s)	422
TscAI	CASTG	3 cut(s)	224, 595, 631
TseI	GCWGC	5 cut(s)	27, 116, 175, 224, 578
TspDTI	ATGAA	3 cut(s)	338, 394, 469
TspGWI	ACGGA	1 cut(s)	844
TspMI	CCCGGG	1 cut(s)	822
TspRI	CASTG	3 cut(s)	224, 595, 631
Vha464I	CTTAAG	1 cut(s)	421
VpaK11BI	GGWCC	5 cut(s)	533, 826, 892, 1019, 1041
XapI	RAATTY	1 cut(s)	770
XceI	RCATGY	1 cut(s)	304
XmaI	CCCGGG	1 cut(s)	822
XspI	CTAG	3 cut(s)	233, 281, 344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.