2'-5' RNA ligase superfamily
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| 2_5_RNA_ligase2 | PF13563 | 50 - 172 | 1.7e-14 | 2'-5' RNA ligase superfamily |
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No orthologs found for this gene in the current database.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 298 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 491 |
| AciI | CCGC | 2 cut(s) | 189, 222 |
| AcoI | YGGCCR | 1 cut(s) | 219 |
| AcuI | CTGAAG | 2 cut(s) | 308, 471 |
| AfaI | GTAC | 1 cut(s) | 288 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 491 |
| AgsI | TTSAA | 2 cut(s) | 185, 478 |
| AluBI | AGCT | 5 cut(s) | 86, 174, 196, 267, 564 |
| AluI | AGCT | 5 cut(s) | 86, 174, 196, 267, 564 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 491 |
| AoxI | GGCC | 2 cut(s) | 219, 240 |
| AsuHPI | GGTGA | 1 cut(s) | 544 |
| AsuII | TTCGAA | 1 cut(s) | 135 |
| BanI | GGYRCC | 1 cut(s) | 298 |
| BccI | CCATC | 2 cut(s) | 129, 439 |
| BfaI | CTAG | 2 cut(s) | 557, 565 |
| BisI | GCNGC | 1 cut(s) | 222 |
| BlsI | GCNGC | 1 cut(s) | 223 |
| BmiI | GGNNCC | 1 cut(s) | 300 |
| BmrI | ACTGGG | 1 cut(s) | 331 |
| BmsI | GCATC | 1 cut(s) | 393 |
| BmuI | ACTGGG | 1 cut(s) | 331 |
| BoxI | GACNNNNGTC | 1 cut(s) | 20 |
| BpmI | CTGGAG | 1 cut(s) | 154 |
| Bpu14I | TTCGAA | 1 cut(s) | 135 |
| BpuEI | CTTGAG | 1 cut(s) | 408 |
| BsaWI | WCCGGW | 1 cut(s) | 529 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 491 |
| Bse1I | ACTGG | 3 cut(s) | 331, 337, 485 |
| Bse3DI | GCAATG | 2 cut(s) | 317, 357 |
| BseGI | GGATG | 3 cut(s) | 121, 408, 450 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 491 |
| BseMI | GCAATG | 2 cut(s) | 317, 357 |
| BseNI | ACTGG | 3 cut(s) | 331, 337, 485 |
| BseRI | GAGGAG | 1 cut(s) | 395 |
| BseYI | CCCAGC | 1 cut(s) | 491 |
| BshFI | GGCC | 2 cut(s) | 221, 242 |
| BshNI | GGYRCC | 1 cut(s) | 298 |
| BsiSI | CCGG | 1 cut(s) | 530 |
| BslFI | GGGAC | 2 cut(s) | 319, 485 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 491 |
| BsmFI | GGGAC | 2 cut(s) | 319, 485 |
| BsnI | GGCC | 2 cut(s) | 221, 242 |
| Bsp119I | TTCGAA | 1 cut(s) | 135 |
| BspACI | CCGC | 2 cut(s) | 189, 222 |
| BspANI | GGCC | 2 cut(s) | 221, 242 |
| BspLI | GGNNCC | 1 cut(s) | 300 |
| BspT104I | TTCGAA | 1 cut(s) | 135 |
| BspT107I | GGYRCC | 1 cut(s) | 298 |
| BsrDI | GCAATG | 2 cut(s) | 317, 357 |
| BsrI | ACTGG | 3 cut(s) | 331, 337, 485 |
| Bst4CI | ACNGT | 4 cut(s) | 40, 59, 291, 413 |
| Bst6I | CTCTTC | 2 cut(s) | 170, 431 |
| BstBI | TTCGAA | 1 cut(s) | 135 |
| BstF5I | GGATG | 3 cut(s) | 121, 408, 450 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 221, 497 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 20 |
| BsuRI | GGCC | 2 cut(s) | 221, 242 |
| BtsCI | GGATG | 3 cut(s) | 121, 408, 450 |
| BtsI | GCAGTG | 1 cut(s) | 4 |
| BtsIMutI | CAGTG | 1 cut(s) | 4 |
| CaiI | CAGNNNCTG | 1 cut(s) | 491 |
| Csp6I | GTAC | 1 cut(s) | 287 |
| CviQI | GTAC | 1 cut(s) | 287 |
| EaeI | YGGCCR | 1 cut(s) | 219 |
| Eam1104I | CTCTTC | 2 cut(s) | 170, 431 |
| EarI | CTCTTC | 2 cut(s) | 170, 431 |
| Eco57I | CTGAAG | 2 cut(s) | 308, 471 |
| FaiI | YATR | 5 cut(s) | 26, 69, 71, 498, 503 |
| FaqI | GGGAC | 2 cut(s) | 319, 485 |
| FauI | CCCGC | 1 cut(s) | 196 |
| Fnu4HI | GCNGC | 1 cut(s) | 222 |
| FokI | GGATG | 3 cut(s) | 108, 415, 457 |
| Fsp4HI | GCNGC | 1 cut(s) | 222 |
| FspBI | CTAG | 2 cut(s) | 557, 565 |
| GluI | GCNGC | 1 cut(s) | 222 |
| GsaI | CCCAGC | 1 cut(s) | 495 |
| GsuI | CTGGAG | 1 cut(s) | 154 |
| HaeIII | GGCC | 2 cut(s) | 221, 242 |
| HapII | CCGG | 1 cut(s) | 530 |
| HinfI | GANTC | 4 cut(s) | 143, 395, 439, 539 |
| HpaII | CCGG | 1 cut(s) | 530 |
| HphI | GGTGA | 1 cut(s) | 544 |
| Hpy166II | GTNNAC | 1 cut(s) | 104 |
| Hpy188I | TCNGA | 3 cut(s) | 64, 390, 444 |
| Hpy188III | TCNNGA | 1 cut(s) | 425 |
| Hpy8I | GTNNAC | 1 cut(s) | 104 |
| Hpy99I | CGWCG | 1 cut(s) | 19 |
| HpyAV | CCTTC | 2 cut(s) | 318, 356 |
| HpyCH4III | ACNGT | 4 cut(s) | 40, 59, 291, 413 |
| HpyCH4V | TGCA | 1 cut(s) | 4 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 221, 497 |
| LmnI | GCTCC | 1 cut(s) | 264 |
| LweI | GCATC | 1 cut(s) | 393 |
| MaeI | CTAG | 2 cut(s) | 557, 565 |
| MaeIII | GTNAC | 2 cut(s) | 40, 53 |
| MboII | GAAGA | 3 cut(s) | 157, 367, 448 |
| MfeI | CAATTG | 1 cut(s) | 258 |
| MluCI | AATT | 2 cut(s) | 258, 372 |
| MlyI | GAGTC | 2 cut(s) | 448, 548 |
| MmeI | TCCRAC | 1 cut(s) | 422 |
| MnlI | CCTC | 6 cut(s) | 123, 162, 340, 373, 462, 528 |
| MspI | CCGG | 1 cut(s) | 530 |
| MunI | CAATTG | 1 cut(s) | 258 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 221, 497 |
| NlaIV | GGNNCC | 1 cut(s) | 300 |
| NmuCI | GTSAC | 1 cut(s) | 40 |
| NspV | TTCGAA | 1 cut(s) | 135 |
| PfeI | GAWTC | 2 cut(s) | 143, 395 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 491 |
| PkrI | GCNGC | 1 cut(s) | 223 |
| PleI | GAGTC | 2 cut(s) | 447, 547 |
| PpsI | GAGTC | 2 cut(s) | 447, 547 |
| PshAI | GACNNNNGTC | 1 cut(s) | 20 |
| PspFI | CCCAGC | 1 cut(s) | 491 |
| PspN4I | GGNNCC | 1 cut(s) | 300 |
| PstNI | CAGNNNCTG | 1 cut(s) | 491 |
| RsaI | GTAC | 1 cut(s) | 288 |
| RsaNI | GTAC | 1 cut(s) | 287 |
| SatI | GCNGC | 1 cut(s) | 222 |
| SchI | GAGTC | 2 cut(s) | 448, 548 |
| SetI | ASST | 7 cut(s) | 88, 115, 176, 198, 269, 367, 566 |
| SfaNI | GCATC | 1 cut(s) | 393 |
| SfuI | TTCGAA | 1 cut(s) | 135 |
| SmlI | CTYRAG | 1 cut(s) | 423 |
| SmoI | CTYRAG | 1 cut(s) | 423 |
| Sse9I | AATT | 2 cut(s) | 258, 372 |
| SsiI | CCGC | 2 cut(s) | 189, 222 |
| SspMI | CTAG | 2 cut(s) | 557, 565 |
| TaaI | ACNGT | 4 cut(s) | 40, 59, 291, 413 |
| TaqI | TCGA | 4 cut(s) | 135, 141, 198, 369 |
| TasI | AATT | 2 cut(s) | 258, 372 |
| TatI | WGTACW | 1 cut(s) | 286 |
| TauI | GCSGC | 1 cut(s) | 224 |
| TfiI | GAWTC | 2 cut(s) | 143, 395 |
| TseFI | GTSAC | 1 cut(s) | 40 |
| Tsp45I | GTSAC | 1 cut(s) | 40 |
| TspDTI | ATGAA | 3 cut(s) | 169, 306, 368 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 491 |
| XspI | CTAG | 2 cut(s) | 557, 565 |