Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003787.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

187963 .. 189480

Gene Structure 1518 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1335 bp

atggctccaaacaattcagttgcggtcacaattgagaagccaaacaacactttctcaaagaccaagtcttttgagaagcagaaagcagcgagcaccaagcaatttacatgggttcttcttctcaaagtcaacagaatctttgcttgtctctcatggcttccagtggcattcagaaaacgcattacctcatcggacatgagcgatgaggagccgagaaatcgagggaagttgtatagatttattcaagcgtttcttcttttgtcaattgtagctttgggagttgaagtgattgctcattacaagaactggaatttgaatctggttcatcacccttgggaggttcagggtctgttgcactggtcctatatggcttggttgtctttcagagtcgactatattgctcctgtggctatattcctctctaaattctgcattgtactgttcttgattcaatctcttgatagattggttttgtgtcttggatgtttctggatcaagttcaagaaggtaaagccaagaattgagccagatgcttatgatgttgaagacccttctagcttcccaatggtccttcttcagattcccatgtgcaatgaaagagaggtgtacgaacaatccattgcggccgcgtgccagatggattggcctagggacagacttttgattcaagttttagacgactcggacgacttcatttgcatatctatattcaaaaaggccaacttgatatttctgttctttcttttgaggaagctaattcttcccttttactcattcacattgttctgtatcatacttccattgaccatgttcatacctgaggctgaactcccactgtgggtgatttgctatgtgcccattttcatgtccttcctaaacattctaccatctccaaaatctttccctttcttagtcccatacctactctttgagaacacaatgtctgtgacaaaattcaatgccatggtatccggcctatttcagctgggaagttcttacgagtgggtggtgacaaagaagaccggaagatcgtccgaatcagacttgttcgcgctcgctgaaagtaaatccccaaatgaagagaagatctcaagaaggaactccgagtctggtttagaattgttgagcaaactcaaggaacaagaagtagcacctaccaagaagaagaagaaaaatgggatctatagaaaagagctggctcttgcttttctcctactcacagcatcagcaagaagtttcctatcagctcatggagttcacttctatttcttgcttttccaaggcttgtcctttcttgttgtaggcttggacttaataggtgagcaggttagctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0012505 GO:0016020 GO:0031410 GO:0031982 GO:0031984 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0071944 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_tranf_2_3 Glyco_trans_2_3

Protein Analysis

444

Amino Acids

51.1

Weight (kDa)

9.04

Isoelectric Point (pI)

42.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1315
AccI	GTMKAC	1 cut(s)	390
AccII	CGCG	2 cut(s)	629, 1052
AciI	CCGC	3 cut(s)	23, 623, 627
AclWI	GGATC	2 cut(s)	500, 1187
AcoI	YGGCCR	1 cut(s)	624
AcsI	RAATTY	3 cut(s)	310, 425, 953
AcuI	CTGAAG	1 cut(s)	560
AfaI	GTAC	2 cut(s)	438, 608
AfiI	CCNNNNNNNGG	2 cut(s)	337, 838
AgsI	TTSAA	9 cut(s)	245, 284, 316, 452, 502, 545, 668, 712, 958
AluBI	AGCT	7 cut(s)	272, 558, 754, 985, 1195, 1247, 1332
AluI	AGCT	7 cut(s)	272, 558, 754, 985, 1195, 1247, 1332
Alw21I	GWGCWC	1 cut(s)	95
Alw26I	GTCTC	1 cut(s)	152
AlwI	GGATC	2 cut(s)	500, 1187
AlwNI	CAGNNNCTG	1 cut(s)	349
AoxI	GGCC	4 cut(s)	624, 644, 717, 973
ApeKI	GCWGC	1 cut(s)	86
ApoI	RAATTY	3 cut(s)	310, 425, 953
ArsI	GACNNNNNNTTYG	2 cut(s)	50, 82
AspA2I	CCTAGG	1 cut(s)	647
AspLEI	GCGC	1 cut(s)	1054
AspS9I	GGNCC	2 cut(s)	360, 568
AsuHPI	GGTGA	4 cut(s)	320, 853, 1021, 1331
AvaII	GGWCC	2 cut(s)	360, 568
AvrII	CCTAGG	1 cut(s)	647
AxyI	CCTNAGG	1 cut(s)	819
BaeGI	GKGCMC	1 cut(s)	858
BbsI	GAAGAC	2 cut(s)	552, 1025
Bbv12I	GWGCWC	1 cut(s)	95
BbvI	GCAGC	1 cut(s)	98
BccI	CCATC	2 cut(s)	631, 895
BcgI	CGANNNNNNTGC	2 cut(s)	380, 414
BciVI	GTATCC	1 cut(s)	979
BcoDI	GTCTC	1 cut(s)	152
BfaI	CTAG	2 cut(s)	555, 648
BfmI	CTRYAG	1 cut(s)	1183
BfuAI	ACCTGC	1 cut(s)	1315
BfuI	GTATCC	1 cut(s)	979
BglII	AGATCT	1 cut(s)	1086
BisI	GCNGC	3 cut(s)	87, 624, 627
BlnI	CCTAGG	1 cut(s)	647
BlsI	GCNGC	3 cut(s)	88, 625, 628
Bme18I	GGWCC	2 cut(s)	360, 568
BmgT120I	GGNCC	2 cut(s)	360, 568
BmiI	GGNNCC	2 cut(s)	6, 210
BmsI	GCATC	2 cut(s)	520, 1232
BpiI	GAAGAC	2 cut(s)	552, 1025
BplI	GAGNNNNNCTC	2 cut(s)	1073, 1105
BpuEI	CTTGAG	2 cut(s)	1075, 1118
BsaJI	CCNNGG	4 cut(s)	332, 647, 963, 1279
BsaWI	WCCGGW	1 cut(s)	1022
BsaXI	ACNNNNNCTCC	2 cut(s)	270, 300
Bsc4I	CCNNNNNNNGG	2 cut(s)	337, 838
Bse1I	ACTGG	3 cut(s)	161, 311, 362
Bse21I	CCTNAGG	1 cut(s)	819
Bse3DI	GCAATG	2 cut(s)	598, 618
BseDI	CCNNGG	4 cut(s)	332, 647, 963, 1279
BseGI	GGATG	1 cut(s)	488
BseLI	CCNNNNNNNGG	2 cut(s)	337, 838
BseMI	GCAATG	2 cut(s)	598, 618
BseMII	CTCAG	1 cut(s)	810
BseNI	ACTGG	3 cut(s)	161, 311, 362
BseRI	GAGGAG	1 cut(s)	221
BseSI	GKGCMC	1 cut(s)	858
BseX3I	CGGCCG	1 cut(s)	624
BseXI	GCAGC	1 cut(s)	98
BseYI	CCCAGC	1 cut(s)	985
Bsh1236I	CGCG	2 cut(s)	629, 1052
Bsh1285I	CGRYCG	1 cut(s)	627
BshFI	GGCC	4 cut(s)	626, 646, 719, 975
BsiEI	CGRYCG	1 cut(s)	627
BsiHKAI	GWGCWC	1 cut(s)	95
BsiSI	CCGG	2 cut(s)	972, 1023
BslFI	GGGAC	2 cut(s)	665, 899
BslI	CCNNNNNNNGG	2 cut(s)	337, 838
BsmAI	GTCTC	1 cut(s)	152
BsmFI	GGGAC	2 cut(s)	665, 899
BsmI	GAATGC	1 cut(s)	167
BsnI	GGCC	4 cut(s)	626, 646, 719, 975
Bsp1286I	GDGCHC	2 cut(s)	95, 858
Bsp143I	GATC	4 cut(s)	492, 1028, 1086, 1179
Bsp19I	CCATGG	1 cut(s)	963
BspACI	CCGC	3 cut(s)	23, 623, 627
BspANI	GGCC	4 cut(s)	626, 646, 719, 975
BspCNI	CTCAG	1 cut(s)	811
BspFNI	CGCG	2 cut(s)	629, 1052
BspLI	GGNNCC	2 cut(s)	6, 210
BspMI	ACCTGC	1 cut(s)	1315
BspPI	GGATC	2 cut(s)	500, 1187
BsrDI	GCAATG	2 cut(s)	598, 618
BsrI	ACTGG	3 cut(s)	161, 311, 362
BssECI	CCNNGG	4 cut(s)	332, 647, 963, 1279
BssMI	GATC	4 cut(s)	492, 1028, 1086, 1179
BssT1I	CCWWGG	4 cut(s)	332, 647, 963, 1279
Bst4CI	ACNGT	2 cut(s)	441, 837
Bst6I	CTCTTC	1 cut(s)	1074
BstC8I	GCNNGC	4 cut(s)	91, 631, 1056, 1197
BstDEI	CTNAG	2 cut(s)	819, 910
BstDSI	CCRYGG	1 cut(s)	963
BstF5I	GGATG	1 cut(s)	488
BstFNI	CGCG	2 cut(s)	629, 1052
BstHHI	GCGC	1 cut(s)	1054
BstKTI	GATC	4 cut(s)	495, 1031, 1089, 1182
BstMAI	GTCTC	1 cut(s)	152
BstMBI	GATC	4 cut(s)	492, 1028, 1086, 1179
BstMCI	CGRYCG	1 cut(s)	627
BstMWI	GCNNNNNNNGC	1 cut(s)	407
BstSFI	CTRYAG	1 cut(s)	1183
BstSLI	GKGCMC	1 cut(s)	858
BstUI	CGCG	2 cut(s)	629, 1052
BstV1I	GCAGC	1 cut(s)	98
BstV2I	GAAGAC	2 cut(s)	552, 1025
BstX2I	RGATCY	2 cut(s)	1086, 1179
BstYI	RGATCY	2 cut(s)	1086, 1179
BstZI	CGGCCG	1 cut(s)	624
Bsu36I	CCTNAGG	1 cut(s)	819
BsuI	GTATCC	1 cut(s)	979
BsuRI	GGCC	4 cut(s)	626, 646, 719, 975
BtgI	CCRYGG	1 cut(s)	963
BtgZI	GCGATG	1 cut(s)	216
BtsCI	GGATG	1 cut(s)	488
BtsIMutI	CAGTG	3 cut(s)	168, 355, 833
BveI	ACCTGC	1 cut(s)	1315
Cac8I	GCNNGC	4 cut(s)	91, 631, 1056, 1197
CaiI	CAGNNNCTG	1 cut(s)	349
CciNI	GCGGCCGC	1 cut(s)	624
CfoI	GCGC	1 cut(s)	1054
Cfr13I	GGNCC	2 cut(s)	360, 568
Csp6I	GTAC	2 cut(s)	437, 607
CviAII	CATG	8 cut(s)	108, 153, 196, 586, 808, 865, 964, 1250
CviQI	GTAC	2 cut(s)	437, 607
DdeI	CTNAG	2 cut(s)	819, 910
DpnI	GATC	4 cut(s)	494, 1030, 1088, 1181
DpnII	GATC	4 cut(s)	492, 1028, 1086, 1179
EaeI	YGGCCR	1 cut(s)	624
EagI	CGGCCG	1 cut(s)	624
Eam1104I	CTCTTC	1 cut(s)	1074
EarI	CTCTTC	1 cut(s)	1074
EclXI	CGGCCG	1 cut(s)	624
Eco130I	CCWWGG	4 cut(s)	332, 647, 963, 1279
Eco47I	GGWCC	2 cut(s)	360, 568
Eco52I	CGGCCG	1 cut(s)	624
Eco57I	CTGAAG	1 cut(s)	560
Eco81I	CCTNAGG	1 cut(s)	819
EcoT14I	CCWWGG	4 cut(s)	332, 647, 963, 1279
ErhI	CCWWGG	4 cut(s)	332, 647, 963, 1279
FaeI	CATG	8 cut(s)	111, 156, 199, 589, 811, 868, 967, 1253
FalI	AAGNNNNNCTT	4 cut(s)	237, 269, 707, 739
FaqI	GGGAC	2 cut(s)	665, 899
FatI	CATG	8 cut(s)	107, 152, 195, 585, 807, 864, 963, 1249
FblI	GTMKAC	1 cut(s)	390
Fnu4HI	GCNGC	3 cut(s)	87, 624, 627
FokI	GGATG	1 cut(s)	495
Fsp4HI	GCNGC	3 cut(s)	87, 624, 627
FspBI	CTAG	2 cut(s)	555, 648
GlaI	GCGC	1 cut(s)	1053
GluI	GCNGC	3 cut(s)	87, 624, 627
GsaI	CCCAGC	1 cut(s)	989
HaeIII	GGCC	4 cut(s)	626, 646, 719, 975
HapII	CCGG	2 cut(s)	972, 1023
HhaI	GCGC	1 cut(s)	1054
Hin1II	CATG	8 cut(s)	111, 156, 199, 589, 811, 868, 967, 1253
Hin6I	GCGC	1 cut(s)	1052
HinP1I	GCGC	1 cut(s)	1052
HincII	GTYRAC	2 cut(s)	130, 391
HindII	GTYRAC	2 cut(s)	130, 391
HinfI	GANTC	9 cut(s)	135, 316, 387, 448, 580, 664, 680, 1037, 1106
HpaII	CCGG	2 cut(s)	972, 1023
HphI	GGTGA	4 cut(s)	320, 853, 1021, 1331
Hpy166II	GTNNAC	4 cut(s)	130, 391, 607, 1258
Hpy188I	TCNGA	8 cut(s)	173, 193, 386, 579, 685, 1036, 1042, 1105
Hpy188III	TCNNGA	5 cut(s)	445, 458, 490, 502, 1092
Hpy8I	GTNNAC	4 cut(s)	130, 391, 607, 1258
HpyAV	CCTTC	5 cut(s)	499, 561, 581, 880, 1089
HpyCH4III	ACNGT	2 cut(s)	441, 837
HpyCH4V	TGCA	4 cut(s)	355, 432, 591, 699
HpyF10VI	GCNNNNNNNGC	1 cut(s)	407
HpyF3I	CTNAG	2 cut(s)	819, 910
Hsp92II	CATG	8 cut(s)	111, 156, 199, 589, 811, 868, 967, 1253
HspAI	GCGC	1 cut(s)	1052
Kzo9I	GATC	4 cut(s)	492, 1028, 1086, 1179
LmnI	GCTCC	3 cut(s)	10, 208, 406
Lsp1109I	GCAGC	1 cut(s)	98
LweI	GCATC	2 cut(s)	520, 1232
MaeI	CTAG	2 cut(s)	555, 648
MaeIII	GTNAC	3 cut(s)	25, 946, 1009
MalI	GATC	4 cut(s)	494, 1030, 1088, 1181
MboI	GATC	4 cut(s)	492, 1028, 1086, 1179
MfeI	CAATTG	2 cut(s)	30, 264
MflI	RGATCY	2 cut(s)	1086, 1179
MhlI	GDGCHC	2 cut(s)	95, 858
MlyI	GAGTC	3 cut(s)	396, 674, 1115
MnlI	CCTC	8 cut(s)	196, 199, 215, 331, 428, 595, 741, 814
MseI	TTAA	1 cut(s)	1313
MslI	CAYNNNNRTG	1 cut(s)	863
MspA1I	CMGCKG	1 cut(s)	985
MspI	CCGG	2 cut(s)	972, 1023
MunI	CAATTG	2 cut(s)	30, 264
Mva1269I	GAATGC	1 cut(s)	167
MvnI	CGCG	2 cut(s)	629, 1052
MwoI	GCNNNNNNNGC	1 cut(s)	407
NcoI	CCATGG	1 cut(s)	963
NdeII	GATC	4 cut(s)	492, 1028, 1086, 1179
NlaIII	CATG	8 cut(s)	111, 156, 199, 589, 811, 868, 967, 1253
NlaIV	GGNNCC	2 cut(s)	6, 210
NmeAIII	GCCGAG	1 cut(s)	237
NmuCI	GTSAC	3 cut(s)	25, 946, 1009
NotI	GCGGCCGC	1 cut(s)	624
PcsI	WCGNNNNNNNCGW	1 cut(s)	684
PctI	GAATGC	1 cut(s)	167
PfeI	GAWTC	6 cut(s)	135, 316, 448, 580, 664, 1037
PflFI	GACNNNGTC	1 cut(s)	64
PkrI	GCNGC	3 cut(s)	88, 625, 628
PleI	GAGTC	3 cut(s)	395, 674, 1114
PpsI	GAGTC	3 cut(s)	395, 674, 1114
PspFI	CCCAGC	1 cut(s)	985
PspN4I	GGNNCC	2 cut(s)	6, 210
PspPI	GGNCC	2 cut(s)	360, 568
PstNI	CAGNNNCTG	1 cut(s)	349
PsuI	RGATCY	2 cut(s)	1086, 1179
PsyI	GACNNNGTC	1 cut(s)	64
PvuII	CAGCTG	1 cut(s)	985
RsaI	GTAC	2 cut(s)	438, 608
RsaNI	GTAC	2 cut(s)	437, 607
RseI	CAYNNNNRTG	1 cut(s)	863
SalI	GTCGAC	1 cut(s)	389
SaqAI	TTAA	1 cut(s)	1313
SatI	GCNGC	3 cut(s)	87, 624, 627
Sau3AI	GATC	4 cut(s)	492, 1028, 1086, 1179
Sau96I	GGNCC	2 cut(s)	360, 568
SchI	GAGTC	3 cut(s)	396, 674, 1115
SduI	GDGCHC	2 cut(s)	95, 858
SfaNI	GCATC	2 cut(s)	520, 1232
SfcI	CTRYAG	1 cut(s)	1183
SinI	GGWCC	2 cut(s)	360, 568
SmiMI	CAYNNNNRTG	1 cut(s)	863
SmlI	CTYRAG	2 cut(s)	1090, 1133
SmoI	CTYRAG	2 cut(s)	1090, 1133
SsiI	CCGC	3 cut(s)	23, 623, 627
SspMI	CTAG	2 cut(s)	555, 648
StyI	CCWWGG	4 cut(s)	332, 647, 963, 1279
TaaI	ACNGT	2 cut(s)	441, 837
TaqI	TCGA	2 cut(s)	220, 390
TatI	WGTACW	1 cut(s)	436
TauI	GCSGC	2 cut(s)	626, 629
TfiI	GAWTC	6 cut(s)	135, 316, 448, 580, 664, 1037
Tru1I	TTAA	1 cut(s)	1313
Tru9I	TTAA	1 cut(s)	1313
TscAI	CASTG	3 cut(s)	168, 362, 840
TseFI	GTSAC	3 cut(s)	25, 946, 1009
TseI	GCWGC	1 cut(s)	86
Tsp45I	GTSAC	3 cut(s)	25, 946, 1009
TspDTI	ATGAA	6 cut(s)	314, 609, 682, 802, 853, 1092
TspRI	CASTG	3 cut(s)	168, 362, 840
Tth111I	GACNNNGTC	1 cut(s)	64
VpaK11BI	GGWCC	2 cut(s)	360, 568
XapI	RAATTY	3 cut(s)	310, 425, 953
XmaJI	CCTAGG	1 cut(s)	647
XmiI	GTMKAC	1 cut(s)	390
XspI	CTAG	2 cut(s)	555, 648

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.