Rmu_sc0003795.1_g000010

nucleobase-ascorbate transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003795.1
N/A
Physical Location & Seq
Forward (+)
41248 .. 41889
642 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 522 bp
atggcaaccgggtcgatctcagatttcgtaaacaaggccgagagtgtgaggggggagacggtggggagtagcagtgggaggaatgagagtggtggcgggtttgatttggagagcggttttaggggtggaagtgggtcgtctccaaagtttgagatagatccggttctgggccggaccaggcctactggaggggctgagattgagccagctgctggaaatggaggggtgaggagtgagagtgaggaggcaatgagggtggagagtaggaggaggagtgaggatgagcctgttttgggtagagatgaggagaggagtgttggtaatgagggaaatgagaataggaataatgggaatggagtcattgcagttgcttcggcgggcgaggcgaagaagatggatcagggagaggaaagagaggaaatgcatttgtatccggatggtgaagaagagcctgttcatggagggtggggaaggccgtccgcaatgaggattggattaagagaaaatctgggtttcggttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Xan_ur_permease

Protein Analysis

173

Amino Acids

18.27

Weight (kDa)

4.74

Isoelectric Point (pI)

71.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 212
AccBSI CCGCTC 1 cut(s) 114
AccIII TCCGGA 1 cut(s) 433
AciI CCGC 4 cut(s) 96, 114, 377, 480
AclWI GGATC 2 cut(s) 152, 405
AfiI CCNNNNNNNGG 6 cut(s) 167, 188, 212, 293, 458, 486
AjnI CCWGG 1 cut(s) 176
AluBI AGCT 1 cut(s) 209
AluI AGCT 1 cut(s) 209
Alw26I GTCTC 2 cut(s) 50, 144
AlwI GGATC 2 cut(s) 152, 405
AlwNI CAGNNNCTG 1 cut(s) 212
Aor13HI TCCGGA 1 cut(s) 433
AoxI GGCC 4 cut(s) 36, 169, 179, 473
ApeKI GCWGC 1 cut(s) 209
AspS9I GGNCC 2 cut(s) 169, 174
AsuC2I CCSGG 1 cut(s) 10
AsuHPI GGTGA 2 cut(s) 238, 452
AvaII GGWCC 1 cut(s) 174
BbvI GCAGC 1 cut(s) 196
BccI CCATC 2 cut(s) 388, 431
BceAI ACGGC 1 cut(s) 460
BcgI CGANNNNNNTGC 3 cut(s) 28, 354, 388
BciT130I CCWGG 1 cut(s) 178
BciVI GTATCC 1 cut(s) 441
BcnI CCSGG 1 cut(s) 10
BcoDI GTCTC 2 cut(s) 50, 144
BfuI GTATCC 1 cut(s) 441
BisI GCNGC 1 cut(s) 210
BlsI GCNGC 1 cut(s) 211
Bme1390I CCNGG 2 cut(s) 10, 178
Bme18I GGWCC 1 cut(s) 174
BmgT120I GGNCC 2 cut(s) 169, 174
BmrFI CCNGG 2 cut(s) 10, 178
BpmI CTGGAG 1 cut(s) 207
BpuMI CCSGG 1 cut(s) 10
BsaWI WCCGGW 2 cut(s) 160, 433
BsaXI ACNNNNNCTCC 8 cut(s) 58, 88, 223, 253, 259, 289, 304, 334
Bsc4I CCNNNNNNNGG 6 cut(s) 167, 188, 212, 293, 458, 486
Bse1I ACTGG 1 cut(s) 190
Bse3DI GCAATG 3 cut(s) 255, 360, 489
BseAI TCCGGA 1 cut(s) 433
BseBI CCWGG 1 cut(s) 178
BseGI GGATG 2 cut(s) 286, 442
BseLI CCNNNNNNNGG 6 cut(s) 167, 188, 212, 293, 458, 486
BseMI GCAATG 3 cut(s) 255, 360, 489
BseMII CTCAG 2 cut(s) 33, 186
BseNI ACTGG 1 cut(s) 190
BseRI GAGGAG 6 cut(s) 244, 257, 283, 286, 320, 325
BseXI GCAGC 1 cut(s) 196
BshFI GGCC 4 cut(s) 38, 171, 181, 475
BsiSI CCGG 4 cut(s) 9, 161, 172, 434
BslI CCNNNNNNNGG 6 cut(s) 167, 188, 212, 293, 458, 486
BsmAI GTCTC 2 cut(s) 50, 144
BsmBI CGTCTC 2 cut(s) 50, 144
BsnI GGCC 4 cut(s) 38, 171, 181, 475
Bsp13I TCCGGA 1 cut(s) 433
Bsp143I GATC 3 cut(s) 15, 157, 397
BspACI CCGC 4 cut(s) 96, 114, 377, 480
BspANI GGCC 4 cut(s) 38, 171, 181, 475
BspCNI CTCAG 2 cut(s) 32, 187
BspEI TCCGGA 1 cut(s) 433
BspPI GGATC 2 cut(s) 152, 405
BspQI GCTCTTC 1 cut(s) 441
BsrBI CCGCTC 1 cut(s) 114
BsrDI GCAATG 3 cut(s) 255, 360, 489
BsrI ACTGG 1 cut(s) 190
BssMI GATC 3 cut(s) 15, 157, 397
Bst2UI CCWGG 1 cut(s) 178
Bst4CI ACNGT 1 cut(s) 61
Bst6I CTCTTC 1 cut(s) 441
BstC8I GCNNGC 2 cut(s) 207, 379
BstDEI CTNAG 2 cut(s) 19, 195
BstENI CCTNNNNNAGG 1 cut(s) 186
BstF5I GGATG 2 cut(s) 286, 442
BstKTI GATC 3 cut(s) 18, 160, 400
BstMAI GTCTC 2 cut(s) 50, 144
BstMBI GATC 3 cut(s) 15, 157, 397
BstMWI GCNNNNNNNGC 1 cut(s) 383
BstNI CCWGG 1 cut(s) 178
BstSCI CCNGG 2 cut(s) 8, 176
BstV1I GCAGC 1 cut(s) 196
BstX2I RGATCY 1 cut(s) 157
BstYI RGATCY 1 cut(s) 157
BsuI GTATCC 1 cut(s) 441
BsuRI GGCC 4 cut(s) 38, 171, 181, 475
BtsCI GGATG 2 cut(s) 286, 442
BtsI GCAGTG 1 cut(s) 79
BtsIMutI CAGTG 1 cut(s) 79
Cac8I GCNNGC 2 cut(s) 207, 379
CaiI CAGNNNCTG 1 cut(s) 212
Cfr13I GGNCC 2 cut(s) 169, 174
CspCI CAANNNNNGTGG 2 cut(s) 237, 272
CviAII CATG 1 cut(s) 458
CviJI RGCY 9 cut(s) 38, 171, 181, 194, 205, 209, 286, 451, 475
CviKI_1 RGCY 9 cut(s) 38, 171, 181, 194, 205, 209, 286, 451, 475
DdeI CTNAG 2 cut(s) 19, 195
DpnI GATC 3 cut(s) 17, 159, 399
DpnII GATC 3 cut(s) 15, 157, 397
Eam1104I CTCTTC 1 cut(s) 441
EarI CTCTTC 1 cut(s) 441
Eco147I AGGCCT 1 cut(s) 181
Eco47I GGWCC 1 cut(s) 174
EcoNI CCTNNNNNAGG 1 cut(s) 186
EcoRII CCWGG 1 cut(s) 176
EcoT22I ATGCAT 1 cut(s) 426
Esp3I CGTCTC 2 cut(s) 50, 144
FaeI CATG 1 cut(s) 461
FaiI YATR 1 cut(s) 459
FatI CATG 1 cut(s) 457
FauI CCCGC 2 cut(s) 89, 370
Fnu4HI GCNGC 1 cut(s) 210
FokI GGATG 2 cut(s) 293, 449
Fsp4HI GCNGC 1 cut(s) 210
GluI GCNGC 1 cut(s) 210
GsuI CTGGAG 1 cut(s) 207
HaeIII GGCC 4 cut(s) 38, 171, 181, 475
HapII CCGG 4 cut(s) 9, 161, 172, 434
Hin1II CATG 1 cut(s) 461
HinfI GANTC 1 cut(s) 357
HpaII CCGG 4 cut(s) 9, 161, 172, 434
HphI GGTGA 2 cut(s) 238, 452
Hpy166II GTNNAC 1 cut(s) 31
Hpy188I TCNGA 1 cut(s) 22
Hpy188III TCNNGA 1 cut(s) 434
Hpy8I GTNNAC 1 cut(s) 31
HpyAV CCTTC 1 cut(s) 465
HpyCH4III ACNGT 1 cut(s) 61
HpyCH4V TGCA 2 cut(s) 365, 424
HpyF10VI GCNNNNNNNGC 1 cut(s) 383
HpyF3I CTNAG 2 cut(s) 19, 195
Hsp92II CATG 1 cut(s) 461
Kpn2I TCCGGA 1 cut(s) 433
Kzo9I GATC 3 cut(s) 15, 157, 397
LguI GCTCTTC 1 cut(s) 441
Lsp1109I GCAGC 1 cut(s) 196
MalI GATC 3 cut(s) 17, 159, 399
MbiI CCGCTC 1 cut(s) 114
MboI GATC 3 cut(s) 15, 157, 397
MboII GAAGA 4 cut(s) 400, 403, 455, 458
MflI RGATCY 1 cut(s) 157
MlyI GAGTC 1 cut(s) 366
Mph1103I ATGCAT 1 cut(s) 426
MroI TCCGGA 1 cut(s) 433
MseI TTAA 1 cut(s) 497
MspA1I CMGCKG 1 cut(s) 209
MspI CCGG 4 cut(s) 9, 161, 172, 434
MspR9I CCNGG 2 cut(s) 10, 178
MvaI CCWGG 1 cut(s) 178
MwoI GCNNNNNNNGC 1 cut(s) 383
NciI CCSGG 1 cut(s) 10
NdeII GATC 3 cut(s) 15, 157, 397
NlaIII CATG 1 cut(s) 461
NmeAIII GCCGAG 1 cut(s) 64
NsiI ATGCAT 1 cut(s) 426
PceI AGGCCT 1 cut(s) 181
PciSI GCTCTTC 1 cut(s) 441
PflMI CCANNNNNTGG 1 cut(s) 212
PkrI GCNGC 1 cut(s) 211
PleI GAGTC 1 cut(s) 365
PpsI GAGTC 1 cut(s) 365
Psp6I CCWGG 1 cut(s) 176
PspGI CCWGG 1 cut(s) 176
PspPI GGNCC 2 cut(s) 169, 174
PstNI CAGNNNCTG 1 cut(s) 212
PsuI RGATCY 1 cut(s) 157
PvuII CAGCTG 1 cut(s) 209
SapI GCTCTTC 1 cut(s) 441
SaqAI TTAA 1 cut(s) 497
SatI GCNGC 1 cut(s) 210
Sau3AI GATC 3 cut(s) 15, 157, 397
Sau96I GGNCC 2 cut(s) 169, 174
SchI GAGTC 1 cut(s) 366
ScrFI CCNGG 2 cut(s) 10, 178
SetI ASST 1 cut(s) 211
SinI GGWCC 1 cut(s) 174
SseBI AGGCCT 1 cut(s) 181
SsiI CCGC 4 cut(s) 96, 114, 377, 480
StuI AGGCCT 1 cut(s) 181
StyD4I CCNGG 2 cut(s) 8, 176
TaaI ACNGT 1 cut(s) 61
TaqI TCGA 1 cut(s) 14
Tru1I TTAA 1 cut(s) 497
Tru9I TTAA 1 cut(s) 497
TscAI CASTG 1 cut(s) 79
TseI GCWGC 1 cut(s) 209
TspDTI ATGAA 1 cut(s) 446
TspRI CASTG 1 cut(s) 79
Van91I CCANNNNNTGG 1 cut(s) 212
VpaK11BI GGWCC 1 cut(s) 174
XagI CCTNNNNNAGG 1 cut(s) 186
Zsp2I ATGCAT 1 cut(s) 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.