Rmu_sc0003800.1_g000001

heat shock

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003800.1
N/A
Physical Location & Seq
Reverse (-)
1932 .. 4389
2458 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 576 bp
atgacaaaaagcaccttcaagcaagcaaacgagtttgatttggtcaacaatcttggtaccattgcaaggtctggtactaagaaattcatagaagccttggctgctggagctgatgttagcatgattgctccgctaccgagtagtcatcacactgatcatcgtacagattccaccggtcatcacgcagatattcatcatcctactgatcatcacatagatttaaaggatcatcacatagatagcaattgtccagctgatcatcacatagattttgccagtcatcacgcagatagccattatcctactgatcatcacatagatttcaaggatcatcacatagatagcaattgtccagctgatcatcacatagattttgccggtcatcatgcagatagccattatcctactgatcatcacatagatttcaaggatcatcacatagatagcaattgtccagctgatcatcacacagatttcgccgatcatcacgcagatagccatggtccagcgaatcatcacacagatttcaccggtcattacacagataacaatcatcacaaagattcatcacactga

Protein Analysis

191

Amino Acids

21.49

Weight (kDa)

5.91

Isoelectric Point (pI)

51.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 56
AccB1I GGYRCC 1 cut(s) 56
AciI CCGC 1 cut(s) 131
AclWI GGATC 3 cut(s) 234, 336, 438
AcsI RAATTY 1 cut(s) 83
AfaI GTAC 3 cut(s) 58, 76, 163
AfiI CCNNNNNNNGG 1 cut(s) 66
AgeI ACCGGT 2 cut(s) 173, 530
AgsI TTSAA 3 cut(s) 19, 325, 427
AluBI AGCT 4 cut(s) 110, 254, 356, 458
AluI AGCT 4 cut(s) 110, 254, 356, 458
AlwI GGATC 3 cut(s) 234, 336, 438
ApeKI GCWGC 1 cut(s) 101
ApoI RAATTY 1 cut(s) 83
AsiGI ACCGGT 2 cut(s) 173, 530
Asp718I GGTACC 1 cut(s) 56
AspS9I GGNCC 1 cut(s) 503
AsuHPI GGTGA 1 cut(s) 520
AvaII GGWCC 1 cut(s) 503
BanI GGYRCC 1 cut(s) 56
BbvI GCAGC 1 cut(s) 88
BclI TGATCA 7 cut(s) 154, 205, 256, 307, 358, 409, 460
BisI GCNGC 1 cut(s) 102
BlsI GCNGC 1 cut(s) 103
Bme18I GGWCC 1 cut(s) 503
BmgT120I GGNCC 1 cut(s) 503
BmiI GGNNCC 1 cut(s) 58
BpmI CTGGAG 1 cut(s) 126
BsaBI GATNNNNATC 2 cut(s) 192, 549
BsaJI CCNNGG 2 cut(s) 96, 499
BsaWI WCCGGW 2 cut(s) 173, 530
BsaXI ACNNNNNCTCC 2 cut(s) 99, 129
Bsc4I CCNNNNNNNGG 1 cut(s) 66
Bse118I RCCGGY 3 cut(s) 173, 377, 530
Bse1I ACTGG 1 cut(s) 276
Bse3DI GCAATG 1 cut(s) 60
Bse8I GATNNNNATC 2 cut(s) 192, 549
BseDI CCNNGG 2 cut(s) 96, 499
BseGI GGATG 1 cut(s) 196
BseJI GATNNNNATC 2 cut(s) 192, 549
BseLI CCNNNNNNNGG 1 cut(s) 66
BseMI GCAATG 1 cut(s) 60
BseNI ACTGG 1 cut(s) 276
BseXI GCAGC 1 cut(s) 88
BshNI GGYRCC 1 cut(s) 56
BshTI ACCGGT 2 cut(s) 173, 530
BsiSI CCGG 3 cut(s) 174, 378, 531
BslI CCNNNNNNNGG 1 cut(s) 66
Bsp19I CCATGG 1 cut(s) 499
BspACI CCGC 1 cut(s) 131
BspLI GGNNCC 1 cut(s) 58
BspPI GGATC 3 cut(s) 234, 336, 438
BspT107I GGYRCC 1 cut(s) 56
BsrDI GCAATG 1 cut(s) 60
BsrFI RCCGGY 3 cut(s) 173, 377, 530
BsrI ACTGG 1 cut(s) 276
BssAI RCCGGY 3 cut(s) 173, 377, 530
BssECI CCNNGG 2 cut(s) 96, 499
BssT1I CCWWGG 2 cut(s) 96, 499
BstC8I GCNNGC 1 cut(s) 24
BstDEI CTNAG 1 cut(s) 78
BstDSI CCRYGG 1 cut(s) 499
BstF5I GGATG 1 cut(s) 196
BstMWI GCNNNNNNNGC 2 cut(s) 101, 107
BstV1I GCAGC 1 cut(s) 88
BtgI CCRYGG 1 cut(s) 499
BtsCI GGATG 1 cut(s) 196
BtsIMutI CAGTG 2 cut(s) 150, 571
Cac8I GCNNGC 1 cut(s) 24
Cfr10I RCCGGY 3 cut(s) 173, 377, 530
Cfr13I GGNCC 1 cut(s) 503
Csp6I GTAC 3 cut(s) 57, 75, 162
CspAI ACCGGT 2 cut(s) 173, 530
CviAII CATG 3 cut(s) 121, 386, 500
CviJI RGCY 9 cut(s) 95, 101, 110, 254, 294, 356, 396, 458, 498
CviKI_1 RGCY 9 cut(s) 95, 101, 110, 254, 294, 356, 396, 458, 498
CviQI GTAC 3 cut(s) 57, 75, 162
DdeI CTNAG 1 cut(s) 78
DraI TTTAAA 1 cut(s) 222
Eco130I CCWWGG 2 cut(s) 96, 499
Eco47I GGWCC 1 cut(s) 503
EcoT14I CCWWGG 2 cut(s) 96, 499
ErhI CCWWGG 2 cut(s) 96, 499
FaeI CATG 3 cut(s) 124, 389, 503
FatI CATG 3 cut(s) 120, 385, 499
FbaI TGATCA 7 cut(s) 154, 205, 256, 307, 358, 409, 460
Fnu4HI GCNGC 1 cut(s) 102
FokI GGATG 1 cut(s) 183
Fsp4HI GCNGC 1 cut(s) 102
GluI GCNGC 1 cut(s) 102
GsuI CTGGAG 1 cut(s) 126
HapII CCGG 3 cut(s) 174, 378, 531
Hin1II CATG 3 cut(s) 124, 389, 503
HincII GTYRAC 1 cut(s) 46
HindII GTYRAC 1 cut(s) 46
HinfI GANTC 3 cut(s) 167, 511, 563
HpaII CCGG 3 cut(s) 174, 378, 531
HphI GGTGA 1 cut(s) 520
Hpy166II GTNNAC 1 cut(s) 46
Hpy8I GTNNAC 1 cut(s) 46
HpyAV CCTTC 1 cut(s) 25
HpyCH4V TGCA 2 cut(s) 65, 389
HpyF10VI GCNNNNNNNGC 2 cut(s) 101, 107
HpyF3I CTNAG 1 cut(s) 78
Hsp92II CATG 3 cut(s) 124, 389, 503
KpnI GGTACC 1 cut(s) 60
Ksp22I TGATCA 7 cut(s) 154, 205, 256, 307, 358, 409, 460
LmnI GCTCC 2 cut(s) 107, 133
Lsp1109I GCAGC 1 cut(s) 88
MfeI CAATTG 3 cut(s) 244, 346, 448
MluCI AATT 4 cut(s) 83, 244, 346, 448
MseI TTAA 1 cut(s) 221
MspA1I CMGCKG 3 cut(s) 254, 356, 458
MspI CCGG 3 cut(s) 174, 378, 531
MunI CAATTG 3 cut(s) 244, 346, 448
MwoI GCNNNNNNNGC 2 cut(s) 101, 107
NcoI CCATGG 1 cut(s) 499
NlaIII CATG 3 cut(s) 124, 389, 503
NlaIV GGNNCC 1 cut(s) 58
PfeI GAWTC 3 cut(s) 167, 511, 563
PinAI ACCGGT 2 cut(s) 173, 530
PkrI GCNGC 1 cut(s) 103
PspN4I GGNNCC 1 cut(s) 58
PspPI GGNCC 1 cut(s) 503
PvuII CAGCTG 3 cut(s) 254, 356, 458
RsaI GTAC 3 cut(s) 58, 76, 163
RsaNI GTAC 3 cut(s) 57, 75, 162
SaqAI TTAA 1 cut(s) 221
SatI GCNGC 1 cut(s) 102
Sau96I GGNCC 1 cut(s) 503
SetI ASST 6 cut(s) 17, 71, 112, 256, 358, 460
SinI GGWCC 1 cut(s) 503
Sse9I AATT 4 cut(s) 83, 244, 346, 448
SsiI CCGC 1 cut(s) 131
StyI CCWWGG 2 cut(s) 96, 499
TasI AATT 4 cut(s) 83, 244, 346, 448
TfiI GAWTC 3 cut(s) 167, 511, 563
Tru1I TTAA 1 cut(s) 221
Tru9I TTAA 1 cut(s) 221
TscAI CASTG 1 cut(s) 157
TseI GCWGC 1 cut(s) 101
TspDTI ATGAA 3 cut(s) 76, 182, 555
TspRI CASTG 1 cut(s) 157
VpaK11BI GGWCC 1 cut(s) 503
XapI RAATTY 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.