Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003807.1

Orthogroup ID

OG0031284

Physical Location & Seq

Genomic Coordinates Forward (+)

62416 .. 66688

Gene Structure 4273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

atggaagtgtctgcctcgaatgttattctgcttggatacattgtttctctgcttgagcaggctttagaagagcatggttttcctgttccaaatgcagtggattgtaacaggcattgtgtgattatgtcactagtaccaggctacccacttgtgcaggtgaagcaattggaaaatcctgagatagttttcaatactatcattgggctcgttgttcgtctgacagaacatggtttgattcactgtgacttcaatgaatttaacattatgattgatgatgacgagaagatcaccatgattgattttccccaaatggtctctgtatcacatcgtaatgcacaaatgtactttgaccgtgatgtggaatgtgtctttaagtttttcagcaagagattcaacatgtctttccatgaatgcacagctgatattgatggaacagcagtggacacagatgatagtggcaggccttcttttacttcaatagcaaaagatactggttttctagacaaggaactttctgctagtgggtttactaggaaggatcaggaagaaattgctaagtttattgaaggaggcatcaagaaggatgctagttctgatgatgaagatactgaagatgacgagcacatctctgtgttaaatgaagcaaacacaatgggtgttgattcactgcatgtggcagatcagacgttacagcacgatgagcaggttgaaccagagggcaatgtaagaacatgtgaagcaggtcccagcagtgaacccaaaaatgaagatgggagtaacgaggagggagataatgagacagttactaatgacaatgatgctgagctggaaaaacgcttgaacaaggtgaggcgacgtgctgtaacagcagcccgtggaggaagaaaaacttttgcatccagaaatacctacaaagacaagggtggttttgctgccagtgacttccagcccaagtcatggagttttgactatattactagttactaccctactaccctctctagttccaagcatttggcaagagatttatgccataaatgtttagatcacagtggtgctacgattgaagggttcactgttaatactggcatgcacttgttgaggctgactggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RIO1 Rio2_N

Protein Analysis

371

Amino Acids

41.36

Weight (kDa)

4.73

Isoelectric Point (pI)

44.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RIO1	PF01163	20 - 136	1.2e-36	RIO domain
ABC1	PF03109	26 - 116	7.5e-08	ABC1 atypical kinase-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031284)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003807.1_g000017 Rmu_sc0026269.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	145
Acc36I	ACCTGC	3 cut(s)	145, 694, 731
AccB7I	CCANNNNNTGG	1 cut(s)	957
AclWI	GGATC	1 cut(s)	546
AcsI	RAATTY	1 cut(s)	254
AcuI	CTGAAG	1 cut(s)	630
AfaI	GTAC	2 cut(s)	135, 344
AfiI	CCNNNNNNNGG	2 cut(s)	358, 957
AflIII	ACRYGT	2 cut(s)	396, 731
AgsI	TTSAA	8 cut(s)	190, 250, 394, 477, 566, 710, 841, 1067
AhlI	ACTAGT	2 cut(s)	130, 977
AjiI	CACGTC	1 cut(s)	857
AjnI	CCWGG	1 cut(s)	136
AleI	CACNNNNGTG	1 cut(s)	1053
AluBI	AGCT	2 cut(s)	419, 826
AluI	AGCT	2 cut(s)	419, 826
Alw21I	GWGCWC	1 cut(s)	624
Alw26I	GTCTC	2 cut(s)	319, 791
AlwI	GGATC	1 cut(s)	546
AoxI	GGCC	1 cut(s)	461
ApeKI	GCWGC	2 cut(s)	869, 932
ApoI	RAATTY	1 cut(s)	254
AspS9I	GGNCC	1 cut(s)	743
AsuHPI	GGTGA	3 cut(s)	169, 280, 859
AvaII	GGWCC	1 cut(s)	743
BanII	GRGCYC	1 cut(s)	207
Bbv12I	GWGCWC	1 cut(s)	624
BbvI	GCAGC	2 cut(s)	881, 919
BccI	CCATC	2 cut(s)	422, 764
BciT130I	CCWGG	1 cut(s)	138
BciVI	GTATCC	1 cut(s)	29
BcoDI	GTCTC	2 cut(s)	319, 791
BcuI	ACTAGT	2 cut(s)	130, 977
BfaI	CTAG	7 cut(s)	131, 500, 519, 531, 588, 978, 1002
BfuAI	ACCTGC	3 cut(s)	145, 694, 731
BfuI	GTATCC	1 cut(s)	29
BisI	GCNGC	2 cut(s)	870, 933
BlpI	GCTNAGC	1 cut(s)	822
BlsI	GCNGC	2 cut(s)	871, 934
Bme1390I	CCNGG	1 cut(s)	138
Bme18I	GGWCC	1 cut(s)	743
BmgBI	CACGTC	1 cut(s)	857
BmgT120I	GGNCC	1 cut(s)	743
BmiI	GGNNCC	1 cut(s)	745
BmrFI	CCNGG	1 cut(s)	138
BmsI	GCATC	4 cut(s)	574, 582, 808, 905
BplI	GAGNNNNNCTC	2 cut(s)	611, 643
Bpu1102I	GCTNAGC	1 cut(s)	822
BpuEI	CTTGAG	1 cut(s)	74
BsaI	GGTCTC	1 cut(s)	319
BsaJI	CCNNGG	1 cut(s)	874
Bsc4I	CCNNNNNNNGG	2 cut(s)	358, 957
Bse1I	ACTGG	4 cut(s)	496, 936, 1090, 1114
Bse3DI	GCAATG	1 cut(s)	727
BseBI	CCWGG	1 cut(s)	138
BseDI	CCNNGG	1 cut(s)	874
BseGI	GGATG	2 cut(s)	589, 896
BseLI	CCNNNNNNNGG	2 cut(s)	358, 957
BseMI	GCAATG	1 cut(s)	727
BseMII	CTCAG	2 cut(s)	168, 813
BseNI	ACTGG	4 cut(s)	496, 936, 1090, 1114
BseRI	GAGGAG	1 cut(s)	797
BseXI	GCAGC	2 cut(s)	881, 919
BseYI	CCCAGC	1 cut(s)	746
BsgI	GTGCAG	1 cut(s)	173
BshFI	GGCC	1 cut(s)	463
BsiHKAI	GWGCWC	1 cut(s)	624
BslFI	GGGAC	1 cut(s)	729
BslI	CCNNNNNNNGG	2 cut(s)	358, 957
BsmAI	GTCTC	2 cut(s)	319, 791
BsmFI	GGGAC	1 cut(s)	729
BsmI	GAATGC	1 cut(s)	416
BsnI	GGCC	1 cut(s)	463
Bso31I	GGTCTC	1 cut(s)	319
Bsp1286I	GDGCHC	2 cut(s)	207, 624
Bsp143I	GATC	4 cut(s)	285, 538, 679, 1045
Bsp1720I	GCTNAGC	1 cut(s)	822
BspANI	GGCC	1 cut(s)	463
BspCNI	CTCAG	2 cut(s)	169, 814
BspLI	GGNNCC	1 cut(s)	745
BspMI	ACCTGC	3 cut(s)	145, 694, 731
BspPI	GGATC	1 cut(s)	546
BspQI	GCTCTTC	1 cut(s)	63
BspTNI	GGTCTC	1 cut(s)	319
BsrDI	GCAATG	1 cut(s)	727
BsrI	ACTGG	4 cut(s)	496, 936, 1090, 1114
BssECI	CCNNGG	1 cut(s)	874
BssMI	GATC	4 cut(s)	285, 538, 679, 1045
Bst2UI	CCWGG	1 cut(s)	138
Bst4CI	ACNGT	5 cut(s)	242, 353, 802, 1052, 1078
Bst6I	CTCTTC	1 cut(s)	63
BstC8I	GCNNGC	3 cut(s)	60, 461, 1091
BstDEI	CTNAG	3 cut(s)	177, 555, 822
BstDSI	CCRYGG	1 cut(s)	874
BstF5I	GGATG	2 cut(s)	589, 896
BstKTI	GATC	4 cut(s)	288, 541, 682, 1048
BstMAI	GTCTC	2 cut(s)	319, 791
BstMBI	GATC	4 cut(s)	285, 538, 679, 1045
BstMWI	GCNNNNNNNGC	3 cut(s)	160, 700, 866
BstNI	CCWGG	1 cut(s)	138
BstNSI	RCATGY	4 cut(s)	400, 674, 735, 1093
BstSCI	CCNGG	1 cut(s)	136
BstV1I	GCAGC	2 cut(s)	881, 919
BstXI	CCANNNNNNTGG	1 cut(s)	1015
BsuI	GTATCC	1 cut(s)	29
BsuRI	GGCC	1 cut(s)	463
BtgI	CCRYGG	1 cut(s)	874
BtrI	CACGTC	1 cut(s)	857
BtsCI	GGATG	2 cut(s)	589, 896
BtsI	GCAGTG	4 cut(s)	102, 444, 665, 757
BtsIMutI	CAGTG	8 cut(s)	102, 238, 444, 665, 757, 943, 1057, 1074
BveI	ACCTGC	3 cut(s)	145, 694, 731
Cac8I	GCNNGC	3 cut(s)	60, 461, 1091
Cfr13I	GGNCC	1 cut(s)	743
Csp6I	GTAC	2 cut(s)	134, 343
CspCI	CAANNNNNGTGG	2 cut(s)	78, 113
CviAII	CATG	9 cut(s)	74, 227, 292, 397, 407, 671, 732, 957, 1090
CviQI	GTAC	2 cut(s)	134, 343
DdeI	CTNAG	3 cut(s)	177, 555, 822
DpnI	GATC	4 cut(s)	287, 540, 681, 1047
DpnII	GATC	4 cut(s)	285, 538, 679, 1045
Eam1104I	CTCTTC	1 cut(s)	63
EarI	CTCTTC	1 cut(s)	63
Eco147I	AGGCCT	1 cut(s)	463
Eco24I	GRGCYC	1 cut(s)	207
Eco31I	GGTCTC	1 cut(s)	319
Eco47I	GGWCC	1 cut(s)	743
Eco57I	CTGAAG	1 cut(s)	630
EcoO109I	RGGNCCY	1 cut(s)	743
EcoRII	CCWGG	1 cut(s)	136
EcoT38I	GRGCYC	1 cut(s)	207
FaeI	CATG	9 cut(s)	77, 230, 295, 400, 410, 674, 735, 960, 1093
FalI	AAGNNNNNCTT	2 cut(s)	874, 906
FaqI	GGGAC	1 cut(s)	729
FatI	CATG	9 cut(s)	73, 226, 291, 396, 406, 670, 731, 956, 1089
Fnu4HI	GCNGC	2 cut(s)	870, 933
FokI	GGATG	2 cut(s)	596, 883
FriOI	GRGCYC	1 cut(s)	207
Fsp4HI	GCNGC	2 cut(s)	870, 933
FspBI	CTAG	7 cut(s)	131, 500, 519, 531, 588, 978, 1002
GluI	GCNGC	2 cut(s)	870, 933
GsaI	CCCAGC	1 cut(s)	750
HaeIII	GGCC	1 cut(s)	463
Hin1II	CATG	9 cut(s)	77, 230, 295, 400, 410, 674, 735, 960, 1093
HinfI	GANTC	3 cut(s)	235, 390, 662
HphI	GGTGA	3 cut(s)	169, 280, 859
Hpy166II	GTNNAC	4 cut(s)	442, 528, 755, 1074
Hpy188I	TCNGA	3 cut(s)	219, 595, 684
Hpy188III	TCNNGA	5 cut(s)	176, 500, 542, 577, 900
Hpy8I	GTNNAC	4 cut(s)	442, 528, 755, 1074
Hpy99I	CGWCG	1 cut(s)	858
HpyAV	CCTTC	5 cut(s)	474, 529, 560, 574, 1061
HpyCH4III	ACNGT	5 cut(s)	242, 353, 802, 1052, 1078
HpyCH4IV	ACGT	2 cut(s)	686, 856
HpyCH4V	TGCA	7 cut(s)	95, 154, 335, 414, 670, 896, 1093
HpyF10VI	GCNNNNNNNGC	3 cut(s)	160, 700, 866
HpyF3I	CTNAG	3 cut(s)	177, 555, 822
HpySE526I	ACGT	2 cut(s)	686, 856
Hsp92II	CATG	9 cut(s)	77, 230, 295, 400, 410, 674, 735, 960, 1093
Kzo9I	GATC	4 cut(s)	285, 538, 679, 1045
LguI	GCTCTTC	1 cut(s)	63
Lsp1109I	GCAGC	2 cut(s)	881, 919
LweI	GCATC	4 cut(s)	574, 582, 808, 905
MaeI	CTAG	7 cut(s)	131, 500, 519, 531, 588, 978, 1002
MaeII	ACGT	2 cut(s)	686, 856
MaeIII	GTNAC	9 cut(s)	104, 126, 242, 687, 776, 802, 862, 938, 980
MalI	GATC	4 cut(s)	287, 540, 681, 1047
MboI	GATC	4 cut(s)	285, 538, 679, 1045
MboII	GAAGA	7 cut(s)	80, 295, 557, 614, 623, 779, 894
MfeI	CAATTG	1 cut(s)	164
MhlI	GDGCHC	2 cut(s)	207, 624
MluCI	AATT	3 cut(s)	164, 254, 549
MnlI	CCTC	9 cut(s)	25, 563, 709, 775, 778, 843, 872, 1007, 1095
MseI	TTAA	4 cut(s)	258, 372, 635, 1080
MslI	CAYNNNNRTG	3 cut(s)	330, 629, 1053
MspA1I	CMGCKG	1 cut(s)	419
MspR9I	CCNGG	1 cut(s)	138
MunI	CAATTG	1 cut(s)	164
Mva1269I	GAATGC	1 cut(s)	416
MvaI	CCWGG	1 cut(s)	138
MwoI	GCNNNNNNNGC	3 cut(s)	160, 700, 866
NdeII	GATC	4 cut(s)	285, 538, 679, 1045
NlaIII	CATG	9 cut(s)	77, 230, 295, 400, 410, 674, 735, 960, 1093
NlaIV	GGNNCC	1 cut(s)	745
NmuCI	GTSAC	3 cut(s)	126, 242, 938
NspI	RCATGY	4 cut(s)	400, 674, 735, 1093
OliI	CACNNNNGTG	1 cut(s)	1053
PaeI	GCATGC	1 cut(s)	1093
PaqCI	CACCTGC	1 cut(s)	145
PceI	AGGCCT	1 cut(s)	463
PciI	ACATGT	2 cut(s)	396, 731
PciSI	GCTCTTC	1 cut(s)	63
PctI	GAATGC	1 cut(s)	416
PfeI	GAWTC	3 cut(s)	235, 390, 662
PflMI	CCANNNNNTGG	1 cut(s)	957
PkrI	GCNGC	2 cut(s)	871, 934
PpuMI	RGGWCCY	1 cut(s)	743
PscI	ACATGT	2 cut(s)	396, 731
Psp5II	RGGWCCY	1 cut(s)	743
Psp6I	CCWGG	1 cut(s)	136
PspFI	CCCAGC	1 cut(s)	746
PspGI	CCWGG	1 cut(s)	136
PspN4I	GGNNCC	1 cut(s)	745
PspPI	GGNCC	1 cut(s)	743
PspPPI	RGGWCCY	1 cut(s)	743
PvuII	CAGCTG	1 cut(s)	419
RsaI	GTAC	2 cut(s)	135, 344
RsaNI	GTAC	2 cut(s)	134, 343
RseI	CAYNNNNRTG	3 cut(s)	330, 629, 1053
SapI	GCTCTTC	1 cut(s)	63
SaqAI	TTAA	4 cut(s)	258, 372, 635, 1080
SatI	GCNGC	2 cut(s)	870, 933
Sau3AI	GATC	4 cut(s)	285, 538, 679, 1045
Sau96I	GGNCC	1 cut(s)	743
ScrFI	CCNGG	1 cut(s)	138
SduI	GDGCHC	2 cut(s)	207, 624
SetI	ASST	9 cut(s)	159, 421, 689, 708, 745, 828, 849, 859, 911
SfaNI	GCATC	4 cut(s)	574, 582, 808, 905
SinI	GGWCC	1 cut(s)	743
SmiMI	CAYNNNNRTG	3 cut(s)	330, 629, 1053
SmlI	CTYRAG	1 cut(s)	53
SmoI	CTYRAG	1 cut(s)	53
SpeI	ACTAGT	2 cut(s)	130, 977
SphI	GCATGC	1 cut(s)	1093
Sse9I	AATT	3 cut(s)	164, 254, 549
SseBI	AGGCCT	1 cut(s)	463
SspMI	CTAG	7 cut(s)	131, 500, 519, 531, 588, 978, 1002
StuI	AGGCCT	1 cut(s)	463
StyD4I	CCNGG	1 cut(s)	136
TaaI	ACNGT	5 cut(s)	242, 353, 802, 1052, 1078
TaiI	ACGT	2 cut(s)	689, 859
TaqI	TCGA	1 cut(s)	17
TasI	AATT	3 cut(s)	164, 254, 549
TatI	WGTACW	1 cut(s)	342
TfiI	GAWTC	3 cut(s)	235, 390, 662
Tru1I	TTAA	4 cut(s)	258, 372, 635, 1080
Tru9I	TTAA	4 cut(s)	258, 372, 635, 1080
TscAI	CASTG	8 cut(s)	102, 245, 444, 672, 757, 943, 1057, 1081
TseFI	GTSAC	3 cut(s)	126, 242, 938
TseI	GCWGC	2 cut(s)	869, 932
Tsp45I	GTSAC	3 cut(s)	126, 242, 938
TspDTI	ATGAA	5 cut(s)	267, 423, 615, 654, 780
TspRI	CASTG	8 cut(s)	102, 245, 444, 672, 757, 943, 1057, 1081
Van91I	CCANNNNNTGG	1 cut(s)	957
VpaK11BI	GGWCC	1 cut(s)	743
XapI	RAATTY	1 cut(s)	254
XbaI	TCTAGA	1 cut(s)	499
XceI	RCATGY	4 cut(s)	400, 674, 735, 1093
XspI	CTAG	7 cut(s)	131, 500, 519, 531, 588, 978, 1002

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.