Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003809.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

76214 .. 77105

Gene Structure 892 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003809.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

atggaaggtttatcggtagcctcaccaagtctctctctgcaaatccactccttcccgccaaaaattcgcatcaccgccaccggcggtgacaaccctaacaaccaccacaccttcaagcttcacgctttatcacaacgacgccgaaaacctccgaaattcgaggaaaacgacgcgttcccggactcgttaccgctccacacgaagaacccacacgccgtttacaaggacatacaaagattcgcgaggcagaacaagctcaccgaggccctggcgattctggactacttggaccaaaacggcatccccgtcaacgccaccacattctcccacctcatcaccgcctgcgtccgcacgaggtcgttggacaccggcaagaagatccacacctatattcggatcaacggactcgaaaccaacgagtttctgcgccggaaattggtgaatatgtacacgagtttcgggtcggttgatgatgcacacaacttgttcgatgatatgtctagcaagaacgtgtactcgtggaacgcgttgcttagagggactgtggttgcgggtgggaagcggtaccgtgatgttctcgagacgtattcggaaatgagggggttgggggtggagatgaatgtgtatagtttctctaatgtgatcaagagctttgcgggcgcttcggcgctttcgcaaggtttgaggacgcatgggctgttggtgaagaatggtttcgttgatagtgtgattgttgggacgagtttgattgatatgtacttcaaatgtggcaagattaagcttgcacgccaagtgtttgaggagatgggttgtacaaggaagctttggagcatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3 Pkinase

Protein Analysis

278

Amino Acids

31.24

Weight (kDa)

9.59

Isoelectric Point (pI)

32.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	564
AccB1I	GGYRCC	1 cut(s)	564
AccBSI	CCGCTC	1 cut(s)	193
AccII	CGCG	3 cut(s)	173, 242, 527
AciI	CCGC	9 cut(s)	56, 75, 84, 191, 339, 349, 551, 562, 656
AclWI	GGATC	2 cut(s)	373, 404
AcsI	RAATTY	2 cut(s)	63, 155
AcyI	GRCGYC	1 cut(s)	139
AfaI	GTAC	5 cut(s)	449, 515, 566, 758, 814
AfiI	CCNNNNNNNGG	2 cut(s)	393, 436
AflIII	ACRYGT	3 cut(s)	171, 510, 525
AgsI	TTSAA	2 cut(s)	115, 763
AjnI	CCWGG	1 cut(s)	267
AluBI	AGCT	5 cut(s)	118, 256, 651, 781, 823
AluI	AGCT	5 cut(s)	118, 256, 651, 781, 823
Alw26I	GTCTC	2 cut(s)	35, 575
AlwI	GGATC	2 cut(s)	373, 404
Ama87I	CYCGRG	1 cut(s)	578
AoxI	GGCC	1 cut(s)	264
ApoI	RAATTY	2 cut(s)	63, 155
Asp700I	GAANNNNTTC	1 cut(s)	713
Asp718I	GGTACC	1 cut(s)	564
AspLEI	GCGC	3 cut(s)	429, 662, 670
AspS9I	GGNCC	2 cut(s)	265, 289
AsuC2I	CCSGG	1 cut(s)	179
AsuHPI	GGTGA	7 cut(s)	15, 64, 98, 250, 328, 451, 715
AvaI	CYCGRG	1 cut(s)	578
AvaII	GGWCC	1 cut(s)	289
BanI	GGYRCC	1 cut(s)	564
BauI	CACGAG	3 cut(s)	352, 451, 517
BccI	CCATC	1 cut(s)	799
BceAI	ACGGC	2 cut(s)	200, 313
BciT130I	CCWGG	1 cut(s)	269
BclI	TGATCA	1 cut(s)	642
BcnI	CCSGG	1 cut(s)	179
BcoDI	GTCTC	2 cut(s)	35, 575
BfaI	CTAG	1 cut(s)	501
BfoI	RGCGCY	2 cut(s)	663, 671
Bme1390I	CCNGG	2 cut(s)	179, 269
Bme18I	GGWCC	1 cut(s)	289
BmeT110I	CYCGRG	1 cut(s)	578
BmgT120I	GGNCC	2 cut(s)	265, 289
BmiI	GGNNCC	1 cut(s)	566
BmrFI	CCNGG	2 cut(s)	179, 269
BmsI	GCATC	3 cut(s)	78, 309, 463
BpuMI	CCSGG	1 cut(s)	179
BsaHI	GRCGYC	1 cut(s)	139
BsaJI	CCNNGG	2 cut(s)	261, 267
Bsc4I	CCNNNNNNNGG	2 cut(s)	393, 436
Bse118I	RCCGGY	2 cut(s)	80, 368
BseBI	CCWGG	1 cut(s)	269
BseDI	CCNNGG	2 cut(s)	261, 267
BseGI	GGATG	1 cut(s)	300
BseLI	CCNNNNNNNGG	2 cut(s)	393, 436
BseRI	GAGGAG	1 cut(s)	815
Bsh1236I	CGCG	3 cut(s)	173, 242, 527
BshFI	GGCC	1 cut(s)	266
BshNI	GGYRCC	1 cut(s)	564
BsiHKCI	CYCGRG	1 cut(s)	578
BsiSI	CCGG	4 cut(s)	81, 179, 369, 430
BslFI	GGGAC	2 cut(s)	553, 751
BslI	CCNNNNNNNGG	2 cut(s)	393, 436
BsmAI	GTCTC	2 cut(s)	35, 575
BsmBI	CGTCTC	1 cut(s)	575
BsmFI	GGGAC	2 cut(s)	553, 751
BsnI	GGCC	1 cut(s)	266
BsoBI	CYCGRG	1 cut(s)	578
Bsp1407I	TGTACA	2 cut(s)	447, 812
Bsp143I	GATC	3 cut(s)	378, 396, 642
Bsp68I	TCGCGA	1 cut(s)	242
BspACI	CCGC	9 cut(s)	56, 75, 84, 191, 339, 349, 551, 562, 656
BspANI	GGCC	1 cut(s)	266
BspFNI	CGCG	3 cut(s)	173, 242, 527
BspLI	GGNNCC	1 cut(s)	566
BspPI	GGATC	2 cut(s)	373, 404
BspT107I	GGYRCC	1 cut(s)	564
BsrBI	CCGCTC	1 cut(s)	193
BsrFI	RCCGGY	2 cut(s)	80, 368
BsrGI	TGTACA	2 cut(s)	447, 812
BssAI	RCCGGY	2 cut(s)	80, 368
BssECI	CCNNGG	2 cut(s)	261, 267
BssMI	GATC	3 cut(s)	378, 396, 642
BssNI	GRCGYC	1 cut(s)	139
BssSI	CACGAG	3 cut(s)	352, 451, 517
Bst2BI	CACGAG	3 cut(s)	352, 451, 517
Bst2UI	CCWGG	1 cut(s)	269
Bst4CI	ACNGT	2 cut(s)	544, 569
BstACI	GRCGYC	1 cut(s)	139
BstAUI	TGTACA	2 cut(s)	447, 812
BstC8I	GCNNGC	4 cut(s)	343, 658, 783, 787
BstDEI	CTNAG	1 cut(s)	533
BstF5I	GGATG	1 cut(s)	300
BstFNI	CGCG	3 cut(s)	173, 242, 527
BstH2I	RGCGCY	2 cut(s)	663, 671
BstHHI	GCGC	3 cut(s)	429, 662, 670
BstKTI	GATC	3 cut(s)	381, 399, 645
BstMAI	GTCTC	2 cut(s)	35, 575
BstMBI	GATC	3 cut(s)	378, 396, 642
BstMWI	GCNNNNNNNGC	2 cut(s)	253, 657
BstNI	CCWGG	1 cut(s)	269
BstSCI	CCNGG	2 cut(s)	177, 267
BstUI	CGCG	3 cut(s)	173, 242, 527
BstX2I	RGATCY	1 cut(s)	378
BstYI	RGATCY	1 cut(s)	378
BsuRI	GGCC	1 cut(s)	266
BtsCI	GGATG	1 cut(s)	300
BtuMI	TCGCGA	1 cut(s)	242
Cac8I	GCNNGC	4 cut(s)	343, 658, 783, 787
CfoI	GCGC	3 cut(s)	429, 662, 670
Cfr10I	RCCGGY	2 cut(s)	80, 368
Cfr13I	GGNCC	2 cut(s)	265, 289
CseI	GACGC	4 cut(s)	147, 179, 334, 697
Csp6I	GTAC	5 cut(s)	448, 514, 565, 757, 813
CviAII	CATG	1 cut(s)	692
CviJI	RGCY	8 cut(s)	20, 118, 256, 266, 651, 697, 781, 823
CviKI_1	RGCY	8 cut(s)	20, 118, 256, 266, 651, 697, 781, 823
CviQI	GTAC	5 cut(s)	448, 514, 565, 757, 813
DdeI	CTNAG	1 cut(s)	533
DpnI	GATC	3 cut(s)	380, 398, 644
DpnII	GATC	3 cut(s)	378, 396, 642
Eco47I	GGWCC	1 cut(s)	289
Eco88I	CYCGRG	1 cut(s)	578
EcoO109I	RGGNCCY	1 cut(s)	265
EcoRII	CCWGG	1 cut(s)	267
Esp3I	CGTCTC	1 cut(s)	575
FaeI	CATG	1 cut(s)	695
FaiI	YATR	7 cut(s)	230, 390, 446, 497, 627, 693, 755
FaqI	GGGAC	2 cut(s)	553, 751
FatI	CATG	1 cut(s)	691
FauI	CCCGC	3 cut(s)	63, 544, 649
FbaI	TGATCA	1 cut(s)	642
FokI	GGATG	1 cut(s)	287
FspBI	CTAG	1 cut(s)	501
GlaI	GCGC	3 cut(s)	428, 661, 669
HaeII	RGCGCY	2 cut(s)	663, 671
HaeIII	GGCC	1 cut(s)	266
HapII	CCGG	4 cut(s)	81, 179, 369, 430
HgaI	GACGC	4 cut(s)	147, 179, 334, 697
HhaI	GCGC	3 cut(s)	429, 662, 670
Hin1I	GRCGYC	1 cut(s)	139
Hin1II	CATG	1 cut(s)	695
Hin6I	GCGC	3 cut(s)	427, 660, 668
HinP1I	GCGC	3 cut(s)	427, 660, 668
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
HindIII	AAGCTT	3 cut(s)	116, 779, 821
HinfI	GANTC	4 cut(s)	182, 237, 274, 405
HpaII	CCGG	4 cut(s)	81, 179, 369, 430
HphI	GGTGA	7 cut(s)	15, 64, 98, 250, 328, 451, 715
Hpy166II	GTNNAC	4 cut(s)	220, 310, 450, 514
Hpy188I	TCNGA	3 cut(s)	153, 396, 592
Hpy188III	TCNNGA	5 cut(s)	241, 278, 578, 580, 646
Hpy8I	GTNNAC	4 cut(s)	220, 310, 450, 514
Hpy99I	CGWCG	2 cut(s)	141, 173
HpyAV	CCTTC	2 cut(s)	61, 121
HpyCH4III	ACNGT	2 cut(s)	544, 569
HpyCH4IV	ACGT	2 cut(s)	510, 584
HpyCH4V	TGCA	3 cut(s)	40, 476, 785
HpyF10VI	GCNNNNNNNGC	2 cut(s)	253, 657
HpyF3I	CTNAG	1 cut(s)	533
HpySE526I	ACGT	2 cut(s)	510, 584
Hsp92I	GRCGYC	1 cut(s)	139
Hsp92II	CATG	1 cut(s)	695
HspAI	GCGC	3 cut(s)	427, 660, 668
KpnI	GGTACC	1 cut(s)	568
Ksp22I	TGATCA	1 cut(s)	642
Kzo9I	GATC	3 cut(s)	378, 396, 642
LmnI	GCTCC	2 cut(s)	198, 828
LpnPI	CCDG	8 cut(s)	94, 192, 254, 263, 281, 355, 382, 443
LweI	GCATC	3 cut(s)	78, 309, 463
MaeI	CTAG	1 cut(s)	501
MaeII	ACGT	2 cut(s)	510, 584
MaeIII	GTNAC	2 cut(s)	86, 186
MalI	GATC	3 cut(s)	380, 398, 644
MbiI	CCGCTC	1 cut(s)	193
MboI	GATC	3 cut(s)	378, 396, 642
MboII	GAAGA	3 cut(s)	214, 388, 718
MflI	RGATCY	1 cut(s)	378
MluCI	AATT	3 cut(s)	63, 155, 434
MluI	ACGCGT	2 cut(s)	171, 525
MlyI	GAGTC	2 cut(s)	176, 399
MmeI	TCCRAC	1 cut(s)	342
MroXI	GAANNNNTTC	1 cut(s)	713
MseI	TTAA	1 cut(s)	777
MspI	CCGG	4 cut(s)	81, 179, 369, 430
MspR9I	CCNGG	2 cut(s)	179, 269
MvaI	CCWGG	1 cut(s)	269
MvnI	CGCG	3 cut(s)	173, 242, 527
MwoI	GCNNNNNNNGC	2 cut(s)	253, 657
NciI	CCSGG	1 cut(s)	179
NdeII	GATC	3 cut(s)	378, 396, 642
NlaIII	CATG	1 cut(s)	695
NlaIV	GGNNCC	1 cut(s)	566
NmuCI	GTSAC	1 cut(s)	86
NruI	TCGCGA	1 cut(s)	242
PaeR7I	CTCGAG	1 cut(s)	578
PcsI	WCGNNNNNNNCGW	4 cut(s)	165, 303, 414, 524
PdmI	GAANNNNTTC	1 cut(s)	713
PfeI	GAWTC	2 cut(s)	237, 274
PfoI	TCCNGGA	1 cut(s)	177
PleI	GAGTC	2 cut(s)	176, 399
PpsI	GAGTC	2 cut(s)	176, 399
Psp6I	CCWGG	1 cut(s)	267
PspGI	CCWGG	1 cut(s)	267
PspN4I	GGNNCC	1 cut(s)	566
PspPI	GGNCC	2 cut(s)	265, 289
PsuI	RGATCY	1 cut(s)	378
RruI	TCGCGA	1 cut(s)	242
RsaI	GTAC	5 cut(s)	449, 515, 566, 758, 814
RsaNI	GTAC	5 cut(s)	448, 514, 565, 757, 813
SaqAI	TTAA	1 cut(s)	777
Sau3AI	GATC	3 cut(s)	378, 396, 642
Sau96I	GGNCC	2 cut(s)	265, 289
SchI	GAGTC	2 cut(s)	176, 399
ScrFI	CCNGG	2 cut(s)	179, 269
SfaNI	GCATC	3 cut(s)	78, 309, 463
Sfr274I	CTCGAG	1 cut(s)	578
SgrAI	CRCCGGYG	1 cut(s)	80
SinI	GGWCC	1 cut(s)	289
SlaI	CTCGAG	1 cut(s)	578
SmlI	CTYRAG	1 cut(s)	578
SmoI	CTYRAG	1 cut(s)	578
Sse9I	AATT	3 cut(s)	63, 155, 434
SsiI	CCGC	9 cut(s)	56, 75, 84, 191, 339, 349, 551, 562, 656
SspMI	CTAG	1 cut(s)	501
StyD4I	CCNGG	2 cut(s)	177, 267
TaaI	ACNGT	2 cut(s)	544, 569
TaiI	ACGT	2 cut(s)	513, 587
TaqI	TCGA	4 cut(s)	159, 408, 489, 579
TasI	AATT	3 cut(s)	63, 155, 434
TatI	WGTACW	4 cut(s)	447, 513, 756, 812
TfiI	GAWTC	2 cut(s)	237, 274
Tru1I	TTAA	1 cut(s)	777
Tru9I	TTAA	1 cut(s)	777
TseFI	GTSAC	1 cut(s)	86
Tsp45I	GTSAC	1 cut(s)	86
TspDTI	ATGAA	1 cut(s)	632
TspGWI	ACGGA	1 cut(s)	417
VpaK11BI	GGWCC	1 cut(s)	289
XapI	RAATTY	2 cut(s)	63, 155
XhoI	CTCGAG	1 cut(s)	578
XmnI	GAANNNNTTC	1 cut(s)	713
XspI	CTAG	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.