Rmu_sc0003821.1_g000001

Lariat debranching

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003821.1
N/A
Physical Location & Seq
Reverse (-)
7493 .. 8052
560 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 261 bp
atggctccaccttataatccctctaattctgtctcaaatggctcctcgcctggatatactcggaatcctcaaacagaatctttgttgcagtttctggaactcctttatcttcttgatgacatgtcagaatcttcggaagtatccaggagtccttttccatccagcaatagagatgacagcgaagagattcccattgatgatgtggatgagttagaagaccttgctgaagaggctggagatgctgaacatgaagatgtttga

Protein Analysis

86

Amino Acids

9.49

Weight (kDa)

4.05

Isoelectric Point (pI)

83.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 15
AcuI CTGAAG 1 cut(s) 246
AflIII ACRYGT 1 cut(s) 120
AjnI CCWGG 2 cut(s) 49, 143
Alw26I GTCTC 1 cut(s) 37
AlwNI CAGNNNCTG 1 cut(s) 94
Asp700I GAANNNNTTC 1 cut(s) 186
BbsI GAAGAC 1 cut(s) 222
BccI CCATC 1 cut(s) 166
BciT130I CCWGG 2 cut(s) 51, 145
BciVI GTATCC 1 cut(s) 151
BcoDI GTCTC 1 cut(s) 37
BfuI GTATCC 1 cut(s) 151
Bme1390I CCNGG 2 cut(s) 51, 145
BmiI GGNNCC 2 cut(s) 6, 43
BmrFI CCNGG 2 cut(s) 51, 145
BmsI GCATC 1 cut(s) 229
BpiI GAAGAC 1 cut(s) 222
BpmI CTGGAG 1 cut(s) 255
BseBI CCWGG 2 cut(s) 51, 145
BseGI GGATG 2 cut(s) 158, 211
BseRI GAGGAG 1 cut(s) 34
BsmAI GTCTC 1 cut(s) 37
BspLI GGNNCC 2 cut(s) 6, 43
Bst2UI CCWGG 2 cut(s) 51, 145
Bst6I CTCTTC 2 cut(s) 177, 222
BstF5I GGATG 2 cut(s) 158, 211
BstMAI GTCTC 1 cut(s) 37
BstMWI GCNNNNNNNGC 2 cut(s) 230, 239
BstNI CCWGG 2 cut(s) 51, 145
BstNSI RCATGY 1 cut(s) 124
BstSCI CCNGG 2 cut(s) 49, 143
BstV2I GAAGAC 1 cut(s) 222
BsuI GTATCC 1 cut(s) 151
BtsCI GGATG 2 cut(s) 158, 211
CaiI CAGNNNCTG 1 cut(s) 94
CviAII CATG 2 cut(s) 121, 248
CviJI RGCY 3 cut(s) 5, 42, 233
CviKI_1 RGCY 3 cut(s) 5, 42, 233
Eam1104I CTCTTC 2 cut(s) 177, 222
EarI CTCTTC 2 cut(s) 177, 222
Eco57I CTGAAG 1 cut(s) 246
EcoRII CCWGG 2 cut(s) 49, 143
FaeI CATG 2 cut(s) 124, 251
FaiI YATR 4 cut(s) 15, 57, 122, 249
FatI CATG 2 cut(s) 120, 247
FokI GGATG 2 cut(s) 145, 218
GsuI CTGGAG 1 cut(s) 255
Hin1II CATG 2 cut(s) 124, 251
HinfI GANTC 5 cut(s) 64, 77, 128, 148, 187
Hpy188I TCNGA 3 cut(s) 63, 127, 136
Hpy188III TCNNGA 2 cut(s) 95, 113
HpyCH4V TGCA 1 cut(s) 88
HpyF10VI GCNNNNNNNGC 2 cut(s) 230, 239
Hsp92II CATG 2 cut(s) 124, 251
LmnI GCTCC 2 cut(s) 10, 47
LpnPI CCDG 7 cut(s) 36, 63, 80, 130, 157, 175, 219
LweI GCATC 1 cut(s) 229
MboII GAAGA 5 cut(s) 101, 123, 194, 227, 239
MluCI AATT 1 cut(s) 25
MlyI GAGTC 1 cut(s) 157
MnlI CCTC 4 cut(s) 31, 55, 78, 223
MroXI GAANNNNTTC 1 cut(s) 186
MslI CAYNNNNRTG 1 cut(s) 252
MspR9I CCNGG 2 cut(s) 51, 145
MvaI CCWGG 2 cut(s) 51, 145
MwoI GCNNNNNNNGC 2 cut(s) 230, 239
NlaIII CATG 2 cut(s) 124, 251
NlaIV GGNNCC 2 cut(s) 6, 43
NspI RCATGY 1 cut(s) 124
PciI ACATGT 1 cut(s) 120
PdmI GAANNNNTTC 1 cut(s) 186
PfeI GAWTC 4 cut(s) 64, 77, 128, 187
PfoI TCCNGGA 1 cut(s) 143
PleI GAGTC 1 cut(s) 156
PpsI GAGTC 1 cut(s) 156
PscI ACATGT 1 cut(s) 120
PsiI TTATAA 1 cut(s) 15
Psp6I CCWGG 2 cut(s) 49, 143
PspGI CCWGG 2 cut(s) 49, 143
PspN4I GGNNCC 2 cut(s) 6, 43
PstNI CAGNNNCTG 1 cut(s) 94
RseI CAYNNNNRTG 1 cut(s) 252
SchI GAGTC 1 cut(s) 157
ScrFI CCNGG 2 cut(s) 51, 145
SetI ASST 2 cut(s) 13, 222
SfaNI GCATC 1 cut(s) 229
SmiMI CAYNNNNRTG 1 cut(s) 252
Sse9I AATT 1 cut(s) 25
StyD4I CCNGG 2 cut(s) 49, 143
TasI AATT 1 cut(s) 25
TfiI GAWTC 4 cut(s) 64, 77, 128, 187
XceI RCATGY 1 cut(s) 124
XcmI CCANNNNNNNNNTGG 1 cut(s) 199
XmnI GAANNNNTTC 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.