Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003827.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

21249 .. 26694

Gene Structure 5446 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

atggatttggattcatcgctagttggctaccaaagtagactaataaagaaccctaaggccctggcggcagagacggcggttaatcggaagcagcttgtttttcatcgtcgacgactccggcgatggtggccgaggtctccctcgccgactccatcccgatctactctctctacttttcgactcagcctctgtagcttattctacatcgccgacgactcattgactctaaagaaggtggtcgagctcaccgcagttgacttcatcccctccgagtcaatgaccagtgaccagtggctggccgcggactccgatgaccaaactccggcgaccggtgtccagaatccagctaccggtcaccggaatcccgaatccggctaccgggctggtccttcctcctatccagatcgagtcagcgacaacgaatccgagaatagaaagcggcgacttcctcctattccaggttcttggctgagtcagctccgggtcgacattctctccgaatccctacccttcatccagaaattccgaggcaaaaccatcgtcgtcaagtacggcggcgccgccatgaaggacaagaccctccaggctactgtcgtcagagacctcgtcctcctcgcctgcgtcggcctccgccccatcttggtccacggcggcggccccgagatcaacctctggctcaagcgcctcaacattgaggtcaacttccacgacggcctccgtgtcaccgacgcgcccaccatggagatcgtctccatggtcttggccggcaaagtcaacaagcatttggtctccttgatcaaccgagaaggagtcaaggccatcggcctctgcggctccgacggcgagctcatcaccgcccgccccgcccccaacgctgccaagttagggtttgtcggcgaggtggcccgcgtggacccctcaattctctgttgggctttgattgagagtgagtgcgagtgcggtggacatttggggcggaagaaggtgagggtgttggggaaggagggaatgagatcagagatggacaagggtgggttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003991 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006525 GO:0006526 GO:0006591 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0009987 GO:0016053 GO:0016301 GO:0016310 GO:0016597 GO:0016740 GO:0016772 GO:0016774 GO:0019752 GO:0031406 GO:0031976 GO:0031984 GO:0034618 GO:0036094 GO:0042450 GO:0043167 GO:0043168 GO:0043169 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01210 ko01230 map00220 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

AA_kinase

Protein Analysis

346

Amino Acids

38.05

Weight (kDa)

9.45

Isoelectric Point (pI)

56.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_kinase	PF00696	178 - 305	2.3e-19	Amino acid kinase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	557
AccB7I	CCANNNNNTGG	1 cut(s)	295
AccI	GTMKAC	3 cut(s)	37, 109, 486
AccII	CGCG	3 cut(s)	302, 731, 909
AcoI	YGGCCR	3 cut(s)	128, 297, 762
AcsI	RAATTY	1 cut(s)	521
AcyI	GRCGYC	1 cut(s)	558
AfaI	GTAC	1 cut(s)	551
AgeI	ACCGGT	2 cut(s)	329, 350
AjnI	CCWGG	3 cut(s)	60, 457, 582
AluBI	AGCT	6 cut(s)	94, 195, 244, 347, 478, 847
AluI	AGCT	6 cut(s)	94, 195, 244, 347, 478, 847
Alw21I	GWGCWC	2 cut(s)	246, 849
Alw26I	GTCTC	5 cut(s)	65, 141, 594, 754, 793
AlwNI	CAGNNNCTG	2 cut(s)	189, 295
Ama87I	CYCGRG	1 cut(s)	659
ApeKI	GCWGC	2 cut(s)	91, 875
ApoI	RAATTY	1 cut(s)	521
ArsI	GACNNNNNNTTYG	2 cut(s)	525, 557
AsiGI	ACCGGT	2 cut(s)	329, 350
AspLEI	GCGC	3 cut(s)	560, 684, 733
AspS9I	GGNCC	6 cut(s)	58, 386, 643, 656, 904, 913
AsuC2I	CCSGG	2 cut(s)	380, 482
AsuHPI	GGTGA	5 cut(s)	238, 347, 715, 844, 997
AvaI	CYCGRG	1 cut(s)	659
AvaII	GGWCC	3 cut(s)	386, 643, 913
AxyI	CCTNAGG	1 cut(s)	54
BanI	GGYRCC	1 cut(s)	557
BanII	GRGCYC	2 cut(s)	246, 849
Bbv12I	GWGCWC	2 cut(s)	246, 849
BbvI	GCAGC	2 cut(s)	103, 862
BccI	CCATC	6 cut(s)	117, 160, 545, 644, 827, 1015
BceAI	ACGGC	5 cut(s)	90, 568, 664, 727, 856
BcgI	CGANNNNNNTGC	2 cut(s)	520, 554
BciT130I	CCWGG	3 cut(s)	62, 459, 584
BclI	TGATCA	1 cut(s)	795
BcnI	CCSGG	2 cut(s)	380, 482
BcoDI	GTCTC	5 cut(s)	65, 141, 594, 754, 793
BfaI	CTAG	1 cut(s)	20
BfmI	CTRYAG	1 cut(s)	190
BfoI	RGCGCY	2 cut(s)	561, 685
BglI	GCCNNNNNGGC	2 cut(s)	65, 831
Bme1390I	CCNGG	5 cut(s)	62, 380, 459, 482, 584
Bme18I	GGWCC	3 cut(s)	386, 643, 913
BmeT110I	CYCGRG	1 cut(s)	659
BmgT120I	GGNCC	6 cut(s)	58, 386, 643, 656, 904, 913
BmiI	GGNNCC	4 cut(s)	559, 658, 835, 915
BmrFI	CCNGG	5 cut(s)	62, 380, 459, 482, 584
BoxI	GACNNNNGTC	1 cut(s)	332
BplI	GAGNNNNNCTC	2 cut(s)	734, 766
BpmI	CTGGAG	1 cut(s)	566
BpuEI	CTTGAG	1 cut(s)	662
BpuMI	CCSGG	2 cut(s)	380, 482
BsaHI	GRCGYC	1 cut(s)	558
BsaI	GGTCTC	3 cut(s)	141, 594, 793
BsaJI	CCNNGG	7 cut(s)	60, 131, 300, 526, 646, 738, 753
BsaWI	WCCGGW	3 cut(s)	329, 350, 357
BsaXI	ACNNNNNCTCC	2 cut(s)	479, 509
Bse118I	RCCGGY	3 cut(s)	329, 350, 764
Bse1I	ACTGG	2 cut(s)	282, 289
Bse21I	CCTNAGG	1 cut(s)	54
BseBI	CCWGG	3 cut(s)	62, 459, 584
BseDI	CCNNGG	7 cut(s)	60, 131, 300, 526, 646, 738, 753
BseGI	GGATG	3 cut(s)	152, 261, 513
BseMII	CTCAG	2 cut(s)	196, 461
BseNI	ACTGG	2 cut(s)	282, 289
BseRI	GAGGAG	1 cut(s)	602
BseXI	GCAGC	2 cut(s)	103, 862
Bsh1236I	CGCG	3 cut(s)	302, 731, 909
Bsh1285I	CGRYCG	1 cut(s)	330
BshNI	GGYRCC	1 cut(s)	557
BshTI	ACCGGT	2 cut(s)	329, 350
BsiEI	CGRYCG	1 cut(s)	330
BsiHKAI	GWGCWC	2 cut(s)	246, 849
BsiHKCI	CYCGRG	1 cut(s)	659
BsiSI	CCGG	9 cut(s)	118, 323, 330, 351, 358, 372, 379, 481, 765
BsmAI	GTCTC	5 cut(s)	65, 141, 594, 754, 793
BsmBI	CGTCTC	2 cut(s)	65, 754
Bso31I	GGTCTC	3 cut(s)	141, 594, 793
BsoBI	CYCGRG	1 cut(s)	659
Bsp1286I	GDGCHC	2 cut(s)	246, 849
Bsp143I	GATC	6 cut(s)	158, 403, 663, 744, 795, 1013
Bsp19I	CCATGG	2 cut(s)	738, 753
BspCNI	CTCAG	2 cut(s)	195, 462
BspFNI	CGCG	3 cut(s)	302, 731, 909
BspLI	GGNNCC	4 cut(s)	559, 658, 835, 915
BspT107I	GGYRCC	1 cut(s)	557
BspTNI	GGTCTC	3 cut(s)	141, 594, 793
BsrFI	RCCGGY	3 cut(s)	329, 350, 764
BsrI	ACTGG	2 cut(s)	282, 289
BssAI	RCCGGY	3 cut(s)	329, 350, 764
BssECI	CCNNGG	7 cut(s)	60, 131, 300, 526, 646, 738, 753
BssMI	GATC	6 cut(s)	158, 403, 663, 744, 795, 1013
BssNI	GRCGYC	1 cut(s)	558
BssT1I	CCWWGG	2 cut(s)	738, 753
Bst2UI	CCWGG	3 cut(s)	62, 459, 584
Bst4CI	ACNGT	1 cut(s)	592
BstACI	GRCGYC	1 cut(s)	558
BstC8I	GCNNGC	6 cut(s)	297, 619, 766, 845, 859, 907
BstDEI	CTNAG	3 cut(s)	54, 182, 470
BstDSI	CCRYGG	4 cut(s)	300, 646, 738, 753
BstEII	GGTNACC	1 cut(s)	353
BstENI	CCTNNNNNAGG	1 cut(s)	456
BstF5I	GGATG	3 cut(s)	152, 261, 513
BstFNI	CGCG	3 cut(s)	302, 731, 909
BstH2I	RGCGCY	2 cut(s)	561, 685
BstHHI	GCGC	3 cut(s)	560, 684, 733
BstKTI	GATC	6 cut(s)	161, 406, 666, 747, 798, 1016
BstMAI	GTCTC	5 cut(s)	65, 141, 594, 754, 793
BstMBI	GATC	6 cut(s)	158, 403, 663, 744, 795, 1013
BstMCI	CGRYCG	1 cut(s)	330
BstMWI	GCNNNNNNNGC	9 cut(s)	65, 74, 127, 192, 475, 831, 840, 863, 872
BstNI	CCWGG	3 cut(s)	62, 459, 584
BstPAI	GACNNNNGTC	1 cut(s)	332
BstPI	GGTNACC	1 cut(s)	353
BstSCI	CCNGG	5 cut(s)	60, 378, 457, 480, 582
BstSFI	CTRYAG	1 cut(s)	190
BstUI	CGCG	3 cut(s)	302, 731, 909
BstV1I	GCAGC	2 cut(s)	103, 862
BstXI	CCANNNNNNTGG	2 cut(s)	465, 760
Bsu36I	CCTNAGG	1 cut(s)	54
BtgI	CCRYGG	4 cut(s)	300, 646, 738, 753
BtgZI	GCGATG	2 cut(s)	136, 190
BtsCI	GGATG	3 cut(s)	152, 261, 513
BtsIMutI	CAGTG	2 cut(s)	289, 296
Cac8I	GCNNGC	6 cut(s)	297, 619, 766, 845, 859, 907
CaiI	CAGNNNCTG	2 cut(s)	189, 295
CfoI	GCGC	3 cut(s)	560, 684, 733
Cfr10I	RCCGGY	3 cut(s)	329, 350, 764
Cfr13I	GGNCC	6 cut(s)	58, 386, 643, 656, 904, 913
Cfr42I	CCGCGG	1 cut(s)	303
CseI	GACGC	2 cut(s)	610, 737
Csp6I	GTAC	1 cut(s)	550
CspAI	ACCGGT	2 cut(s)	329, 350
CviAII	CATG	3 cut(s)	565, 739, 754
CviQI	GTAC	1 cut(s)	550
DdeI	CTNAG	3 cut(s)	54, 182, 470
DinI	GGCGCC	1 cut(s)	559
DpnI	GATC	6 cut(s)	160, 405, 665, 746, 797, 1015
DpnII	GATC	6 cut(s)	158, 403, 663, 744, 795, 1013
EaeI	YGGCCR	3 cut(s)	128, 297, 762
EciI	GGCGGA	2 cut(s)	620, 991
Ecl136II	GAGCTC	2 cut(s)	244, 847
Eco130I	CCWWGG	2 cut(s)	738, 753
Eco24I	GRGCYC	2 cut(s)	246, 849
Eco31I	GGTCTC	3 cut(s)	141, 594, 793
Eco47I	GGWCC	3 cut(s)	386, 643, 913
Eco53kI	GAGCTC	2 cut(s)	244, 847
Eco81I	CCTNAGG	1 cut(s)	54
Eco88I	CYCGRG	1 cut(s)	659
Eco91I	GGTNACC	1 cut(s)	353
EcoICRI	GAGCTC	2 cut(s)	244, 847
EcoNI	CCTNNNNNAGG	1 cut(s)	456
EcoO109I	RGGNCCY	1 cut(s)	58
EcoO65I	GGTNACC	1 cut(s)	353
EcoRII	CCWGG	3 cut(s)	60, 457, 582
EcoT14I	CCWWGG	2 cut(s)	738, 753
EcoT38I	GRGCYC	2 cut(s)	246, 849
EgeI	GGCGCC	1 cut(s)	559
EheI	GGCGCC	1 cut(s)	559
ErhI	CCWWGG	2 cut(s)	738, 753
Esp3I	CGTCTC	2 cut(s)	65, 754
FaeI	CATG	3 cut(s)	568, 742, 757
FaiI	YATR	3 cut(s)	566, 740, 755
FatI	CATG	3 cut(s)	564, 738, 753
FauI	CCCGC	3 cut(s)	866, 871, 914
FbaI	TGATCA	1 cut(s)	795
FblI	GTMKAC	3 cut(s)	37, 109, 486
FokI	GGATG	3 cut(s)	139, 248, 500
FriOI	GRGCYC	2 cut(s)	246, 849
FspBI	CTAG	1 cut(s)	20
GlaI	GCGC	3 cut(s)	559, 683, 732
GsuI	CTGGAG	1 cut(s)	566
HaeII	RGCGCY	2 cut(s)	561, 685
HapII	CCGG	9 cut(s)	118, 323, 330, 351, 358, 372, 379, 481, 765
HgaI	GACGC	2 cut(s)	610, 737
HhaI	GCGC	3 cut(s)	560, 684, 733
Hin1I	GRCGYC	1 cut(s)	558
Hin1II	CATG	3 cut(s)	568, 742, 757
Hin6I	GCGC	3 cut(s)	558, 682, 731
HinP1I	GCGC	3 cut(s)	558, 682, 731
HincII	GTYRAC	5 cut(s)	110, 256, 487, 700, 775
HindII	GTYRAC	5 cut(s)	110, 256, 487, 700, 775
HpaII	CCGG	9 cut(s)	118, 323, 330, 351, 358, 372, 379, 481, 765
HphI	GGTGA	5 cut(s)	238, 347, 715, 844, 997
Hpy166II	GTNNAC	9 cut(s)	38, 110, 256, 487, 646, 700, 775, 913, 965
Hpy188I	TCNGA	9 cut(s)	87, 271, 310, 427, 499, 527, 599, 838, 1018
Hpy188III	TCNNGA	5 cut(s)	156, 337, 365, 401, 517
Hpy8I	GTNNAC	9 cut(s)	38, 110, 256, 487, 646, 700, 775, 913, 965
Hpy99I	CGWCG	8 cut(s)	111, 114, 215, 545, 626, 713, 731, 842
HpyAV	CCTTC	7 cut(s)	226, 399, 520, 562, 800, 976, 994
HpyCH4III	ACNGT	1 cut(s)	592
HpyF10VI	GCNNNNNNNGC	9 cut(s)	65, 74, 127, 192, 475, 831, 840, 863, 872
HpyF3I	CTNAG	3 cut(s)	54, 182, 470
Hsp92I	GRCGYC	1 cut(s)	558
Hsp92II	CATG	3 cut(s)	568, 742, 757
HspAI	GCGC	3 cut(s)	558, 682, 731
KasI	GGCGCC	1 cut(s)	557
KroI	GCCGGC	1 cut(s)	764
KroNI	GCCGGC	1 cut(s)	766
Ksp22I	TGATCA	1 cut(s)	795
KspI	CCGCGG	1 cut(s)	303
Kzo9I	GATC	6 cut(s)	158, 403, 663, 744, 795, 1013
LmnI	GCTCC	2 cut(s)	483, 839
Lsp1109I	GCAGC	2 cut(s)	103, 862
MaeI	CTAG	1 cut(s)	20
MaeIII	GTNAC	3 cut(s)	284, 353, 721
MalI	GATC	6 cut(s)	160, 405, 665, 746, 797, 1015
MboI	GATC	6 cut(s)	158, 403, 663, 744, 795, 1013
MboII	GAAGA	1 cut(s)	991
MhlI	GDGCHC	2 cut(s)	246, 849
MluCI	AATT	2 cut(s)	521, 921
Mly113I	GGCGCC	1 cut(s)	558
MmeI	TCCRAC	1 cut(s)	861
MroNI	GCCGGC	1 cut(s)	764
MseI	TTAA	1 cut(s)	81
MspA1I	CMGCKG	1 cut(s)	302
MspI	CCGG	9 cut(s)	118, 323, 330, 351, 358, 372, 379, 481, 765
MspR9I	CCNGG	5 cut(s)	62, 380, 459, 482, 584
MvaI	CCWGG	3 cut(s)	62, 459, 584
MvnI	CGCG	3 cut(s)	302, 731, 909
MwoI	GCNNNNNNNGC	9 cut(s)	65, 74, 127, 192, 475, 831, 840, 863, 872
NaeI	GCCGGC	1 cut(s)	766
NarI	GGCGCC	1 cut(s)	558
NciI	CCSGG	2 cut(s)	380, 482
NcoI	CCATGG	2 cut(s)	738, 753
NdeII	GATC	6 cut(s)	158, 403, 663, 744, 795, 1013
NgoMIV	GCCGGC	1 cut(s)	764
NlaIII	CATG	3 cut(s)	568, 742, 757
NlaIV	GGNNCC	4 cut(s)	559, 658, 835, 915
NmeAIII	GCCGAG	1 cut(s)	156
NmuCI	GTSAC	3 cut(s)	284, 353, 721
PcsI	WCGNNNNNNNCGW	1 cut(s)	118
PdiI	GCCGGC	1 cut(s)	766
PfeI	GAWTC	6 cut(s)	11, 340, 361, 368, 422, 500
PflFI	GACNNNGTC	1 cut(s)	605
PflMI	CCANNNNNTGG	1 cut(s)	295
PinAI	ACCGGT	2 cut(s)	329, 350
PluTI	GGCGCC	1 cut(s)	561
PshAI	GACNNNNGTC	1 cut(s)	332
Psp124BI	GAGCTC	2 cut(s)	246, 849
Psp6I	CCWGG	3 cut(s)	60, 457, 582
PspEI	GGTNACC	1 cut(s)	353
PspGI	CCWGG	3 cut(s)	60, 457, 582
PspN4I	GGNNCC	4 cut(s)	559, 658, 835, 915
PspPI	GGNCC	6 cut(s)	58, 386, 643, 656, 904, 913
PstNI	CAGNNNCTG	2 cut(s)	189, 295
PsyI	GACNNNGTC	1 cut(s)	605
RsaI	GTAC	1 cut(s)	551
RsaNI	GTAC	1 cut(s)	550
SacI	GAGCTC	2 cut(s)	246, 849
SacII	CCGCGG	1 cut(s)	303
SalI	GTCGAC	2 cut(s)	108, 485
SaqAI	TTAA	1 cut(s)	81
Sau3AI	GATC	6 cut(s)	158, 403, 663, 744, 795, 1013
Sau96I	GGNCC	6 cut(s)	58, 386, 643, 656, 904, 913
ScrFI	CCNGG	5 cut(s)	62, 380, 459, 482, 584
SduI	GDGCHC	2 cut(s)	246, 849
SfcI	CTRYAG	1 cut(s)	190
SfoI	GGCGCC	1 cut(s)	559
Sfr303I	CCGCGG	1 cut(s)	303
SgrBI	CCGCGG	1 cut(s)	303
SgrDI	CGTCGACG	1 cut(s)	108
SinI	GGWCC	3 cut(s)	386, 643, 913
SmlI	CTYRAG	1 cut(s)	677
SmoI	CTYRAG	1 cut(s)	677
Sse9I	AATT	2 cut(s)	521, 921
SspDI	GGCGCC	1 cut(s)	557
SspMI	CTAG	1 cut(s)	20
SstI	GAGCTC	2 cut(s)	246, 849
StyD4I	CCNGG	5 cut(s)	60, 378, 457, 480, 582
StyI	CCWWGG	2 cut(s)	738, 753
TaaI	ACNGT	1 cut(s)	592
TaqI	TCGA	5 cut(s)	109, 178, 240, 406, 486
TasI	AATT	2 cut(s)	521, 921
TauI	GCSGC	8 cut(s)	68, 302, 442, 558, 563, 654, 657, 834
TfiI	GAWTC	6 cut(s)	11, 340, 361, 368, 422, 500
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TscAI	CASTG	2 cut(s)	289, 296
TseFI	GTSAC	3 cut(s)	284, 353, 721
TseI	GCWGC	2 cut(s)	91, 875
Tsp45I	GTSAC	3 cut(s)	284, 353, 721
TspDTI	ATGAA	4 cut(s)	92, 250, 502, 581
TspGWI	ACGGA	1 cut(s)	707
TspRI	CASTG	2 cut(s)	289, 296
Tth111I	GACNNNGTC	1 cut(s)	605
Van91I	CCANNNNNTGG	1 cut(s)	295
VpaK11BI	GGWCC	3 cut(s)	386, 643, 913
XagI	CCTNNNNNAGG	1 cut(s)	456
XapI	RAATTY	1 cut(s)	521
XmiI	GTMKAC	3 cut(s)	37, 109, 486
XspI	CTAG	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.