Rmu_sc0003840.1_g000004

1-acyl-sn-glycerol-3-phosphate acyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003840.1
N/A
Physical Location & Seq
Reverse (-)
11315 .. 13249
1935 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 420 bp
atggcagctcaagagtatgctgcttcaagaggattgcctattcctaggaatgtcttgcttccacgtacgaaggggtttgtttcatcagtaagtcatatgcgctcatttgttccagcaatttatgattgtacattggctatccccaacaatcagccaccacctacactattgagaatgtttagaggtcaatcttctgtggttgtcataatttggtcttgcctcctcggctatggaattttcaagttcattcagtggtcttccctactatccacatgggaaggcattgcattttcagtgactttcttggtccttgttgtgattcttatgcaaatcctcatccagtcatctgactcggagcgttctacacctctcaaggtgcccccaaaagactcggtgacggagcaactcattcaacaatga

Protein Analysis

139

Amino Acids

15.48

Weight (kDa)

9.44

Isoelectric Point (pI)

55.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 376
AcsI RAATTY 1 cut(s) 234
AfaI GTAC 2 cut(s) 67, 130
AgsI TTSAA 3 cut(s) 27, 241, 413
AluBI AGCT 1 cut(s) 8
AluI AGCT 1 cut(s) 8
ApeKI GCWGC 2 cut(s) 5, 20
ApoI RAATTY 1 cut(s) 234
AspA2I CCTAGG 1 cut(s) 44
AspLEI GCGC 1 cut(s) 102
AspS9I GGNCC 1 cut(s) 307
AsuHPI GGTGA 1 cut(s) 406
AvaII GGWCC 1 cut(s) 307
AvrII CCTAGG 1 cut(s) 44
BaeGI GKGCMC 1 cut(s) 381
BanI GGYRCC 1 cut(s) 376
BbsI GAAGAC 1 cut(s) 249
BbvI GCAGC 2 cut(s) 7, 17
BfaI CTAG 1 cut(s) 45
BglI GCCNNNNNGGC 1 cut(s) 225
BisI GCNGC 2 cut(s) 6, 21
BlnI CCTAGG 1 cut(s) 44
BlsI GCNGC 2 cut(s) 7, 22
Bme18I GGWCC 1 cut(s) 307
BmgT120I GGNCC 1 cut(s) 307
BmiI GGNNCC 1 cut(s) 378
BpiI GAAGAC 1 cut(s) 249
BpuEI CTTGAG 1 cut(s) 356
BsaAI YACGTR 1 cut(s) 65
BsaJI CCNNGG 2 cut(s) 44, 223
Bse1I ACTGG 1 cut(s) 340
Bse3DI GCAATG 1 cut(s) 282
BseDI CCNNGG 2 cut(s) 44, 223
BseGI GGATG 1 cut(s) 336
BseMI GCAATG 1 cut(s) 282
BseNI ACTGG 1 cut(s) 340
BseRI GAGGAG 1 cut(s) 212
BseSI GKGCMC 1 cut(s) 381
BseXI GCAGC 2 cut(s) 7, 17
BshNI GGYRCC 1 cut(s) 376
BsiWI CGTACG 1 cut(s) 65
Bsp1286I GDGCHC 1 cut(s) 381
Bsp1407I TGTACA 1 cut(s) 128
BspLI GGNNCC 1 cut(s) 378
BspT107I GGYRCC 1 cut(s) 376
BsrDI GCAATG 1 cut(s) 282
BsrGI TGTACA 1 cut(s) 128
BsrI ACTGG 1 cut(s) 340
BssECI CCNNGG 2 cut(s) 44, 223
BssT1I CCWWGG 1 cut(s) 44
BstAUI TGTACA 1 cut(s) 128
BstBAI YACGTR 1 cut(s) 65
BstF5I GGATG 1 cut(s) 336
BstHHI GCGC 1 cut(s) 102
BstMWI GCNNNNNNNGC 1 cut(s) 225
BstSLI GKGCMC 1 cut(s) 381
BstV1I GCAGC 2 cut(s) 7, 17
BstV2I GAAGAC 1 cut(s) 249
BtsCI GGATG 1 cut(s) 336
BtsIMutI CAGTG 2 cut(s) 257, 300
CfoI GCGC 1 cut(s) 102
Cfr13I GGNCC 1 cut(s) 307
Csp6I GTAC 2 cut(s) 66, 129
CviAII CATG 1 cut(s) 273
CviJI RGCY 4 cut(s) 8, 137, 154, 228
CviKI_1 RGCY 4 cut(s) 8, 137, 154, 228
CviQI GTAC 2 cut(s) 66, 129
Eco130I CCWWGG 1 cut(s) 44
Eco47I GGWCC 1 cut(s) 307
EcoT14I CCWWGG 1 cut(s) 44
ErhI CCWWGG 1 cut(s) 44
FaeI CATG 1 cut(s) 276
FaiI YATR 8 cut(s) 18, 96, 98, 123, 206, 231, 274, 326
FatI CATG 1 cut(s) 272
FauNDI CATATG 1 cut(s) 96
Fnu4HI GCNGC 2 cut(s) 6, 21
FokI GGATG 1 cut(s) 323
Fsp4HI GCNGC 2 cut(s) 6, 21
FspBI CTAG 1 cut(s) 45
GlaI GCGC 1 cut(s) 101
GluI GCNGC 2 cut(s) 6, 21
HhaI GCGC 1 cut(s) 102
Hin1II CATG 1 cut(s) 276
Hin6I GCGC 1 cut(s) 100
HinP1I GCGC 1 cut(s) 100
HinfI GANTC 3 cut(s) 319, 350, 389
HphI GGTGA 1 cut(s) 406
Hpy188I TCNGA 2 cut(s) 349, 355
Hpy188III TCNNGA 2 cut(s) 11, 27
HpyAV CCTTC 2 cut(s) 64, 272
HpyCH4IV ACGT 1 cut(s) 64
HpyCH4V TGCA 2 cut(s) 287, 328
HpyF10VI GCNNNNNNNGC 1 cut(s) 225
HpySE526I ACGT 1 cut(s) 64
Hsp92II CATG 1 cut(s) 276
HspAI GCGC 1 cut(s) 100
LmnI GCTCC 2 cut(s) 355, 400
LpnPI CCDG 2 cut(s) 126, 353
Lsp1109I GCAGC 2 cut(s) 7, 17
MaeI CTAG 1 cut(s) 45
MaeII ACGT 1 cut(s) 64
MaeIII GTNAC 2 cut(s) 295, 394
MboII GAAGA 2 cut(s) 183, 249
MhlI GDGCHC 1 cut(s) 381
MluCI AATT 3 cut(s) 117, 207, 234
MlyI GAGTC 2 cut(s) 344, 383
MnlI CCTC 6 cut(s) 23, 176, 230, 233, 344, 378
MwoI GCNNNNNNNGC 1 cut(s) 225
NdeI CATATG 1 cut(s) 96
NlaIII CATG 1 cut(s) 276
NlaIV GGNNCC 1 cut(s) 378
NmeAIII GCCGAG 1 cut(s) 204
NmuCI GTSAC 2 cut(s) 295, 394
PfeI GAWTC 1 cut(s) 319
Pfl23II CGTACG 1 cut(s) 65
PkrI GCNGC 2 cut(s) 7, 22
PleI GAGTC 2 cut(s) 344, 383
PpsI GAGTC 2 cut(s) 344, 383
Ppu21I YACGTR 1 cut(s) 65
PspLI CGTACG 1 cut(s) 65
PspN4I GGNNCC 1 cut(s) 378
PspPI GGNCC 1 cut(s) 307
RsaI GTAC 2 cut(s) 67, 130
RsaNI GTAC 2 cut(s) 66, 129
SatI GCNGC 2 cut(s) 6, 21
Sau96I GGNCC 1 cut(s) 307
SchI GAGTC 2 cut(s) 344, 383
SduI GDGCHC 1 cut(s) 381
SetI ASST 6 cut(s) 10, 67, 163, 187, 370, 378
SinI GGWCC 1 cut(s) 307
SmlI CTYRAG 2 cut(s) 9, 371
SmoI CTYRAG 2 cut(s) 9, 371
Sse9I AATT 3 cut(s) 117, 207, 234
SspMI CTAG 1 cut(s) 45
StyI CCWWGG 1 cut(s) 44
TaiI ACGT 1 cut(s) 67
TasI AATT 3 cut(s) 117, 207, 234
TatI WGTACW 1 cut(s) 128
TfiI GAWTC 1 cut(s) 319
TscAI CASTG 2 cut(s) 257, 300
TseFI GTSAC 2 cut(s) 295, 394
TseI GCWGC 2 cut(s) 5, 20
Tsp45I GTSAC 2 cut(s) 295, 394
TspDTI ATGAA 2 cut(s) 72, 235
TspGWI ACGGA 1 cut(s) 413
TspRI CASTG 2 cut(s) 257, 300
VpaK11BI GGWCC 1 cut(s) 307
XapI RAATTY 1 cut(s) 234
XmaJI CCTAGG 1 cut(s) 44
XspI CTAG 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.