Rmu_sc0003846.1_g000001

Protein AAR2 homolog

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003846.1
N/A
Physical Location & Seq
Forward (+)
890 .. 2431
1542 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 357 bp
atggaaatatcacagttcattaaagtcatctactatcaactgaaacatgcgcttaagaaagattgcacagatgcaagtggtgcatcagccttgttagatgattcatggttttctgctgacagctttttgtatcatctttttaaggaattctttttactgctgcaagatgcctcaattgttgacggagatcttctgtcatggatgaggaaactcaaggcgttgctagaaagcaattttggatggcaatttgagcagaacagtgcagttgatgggatacattttgaagaggatgatgagtttgctcctgttgttgtgatgttggatgacccaagttcgactgaagtaccaagattctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

118

Amino Acids

13.56

Weight (kDa)

4.34

Isoelectric Point (pI)

31.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAR2 PF05282 4 - 84 5.3e-12 AAR2 C-terminal repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 146
AfaI GTAC 1 cut(s) 345
AflII CTTAAG 1 cut(s) 53
AgsI TTSAA 1 cut(s) 284
AjuI GAANNNNNNNTTGG 2 cut(s) 219, 251
AluBI AGCT 1 cut(s) 123
AluI AGCT 1 cut(s) 123
ApeKI GCWGC 1 cut(s) 160
ApoI RAATTY 1 cut(s) 146
AspLEI GCGC 1 cut(s) 52
BaeI ACNNNNGTAYC 1 cut(s) 327
BbvI GCAGC 1 cut(s) 147
BccI CCATC 2 cut(s) 234, 263
BciVI GTATCC 1 cut(s) 267
BfaI CTAG 1 cut(s) 224
BfrI CTTAAG 1 cut(s) 53
BfuI GTATCC 1 cut(s) 267
BglII AGATCT 1 cut(s) 187
BisI GCNGC 1 cut(s) 161
BlsI GCNGC 1 cut(s) 162
BmsI GCATC 3 cut(s) 61, 92, 157
BpuEI CTTGAG 1 cut(s) 197
BseGI GGATG 4 cut(s) 207, 245, 295, 328
BseXI GCAGC 1 cut(s) 147
BsgI GTGCAG 1 cut(s) 282
Bsp143I GATC 1 cut(s) 187
BspTI CTTAAG 1 cut(s) 53
BssMI GATC 1 cut(s) 187
Bst4CI ACNGT 2 cut(s) 15, 260
Bst6I CTCTTC 1 cut(s) 279
BstAFI CTTAAG 1 cut(s) 53
BstAPI GCANNNNNTGC 1 cut(s) 80
BstF5I GGATG 4 cut(s) 207, 245, 295, 328
BstHHI GCGC 1 cut(s) 52
BstKTI GATC 1 cut(s) 190
BstMBI GATC 1 cut(s) 187
BstMWI GCNNNNNNNGC 2 cut(s) 80, 250
BstNSI RCATGY 1 cut(s) 50
BstV1I GCAGC 1 cut(s) 147
BstX2I RGATCY 1 cut(s) 187
BstYI RGATCY 1 cut(s) 187
BsuI GTATCC 1 cut(s) 267
BtsCI GGATG 4 cut(s) 207, 245, 295, 328
BtsIMutI CAGTG 1 cut(s) 265
CfoI GCGC 1 cut(s) 52
Csp6I GTAC 1 cut(s) 344
CviAII CATG 3 cut(s) 47, 105, 198
CviJI RGCY 2 cut(s) 89, 123
CviKI_1 RGCY 2 cut(s) 89, 123
CviQI GTAC 1 cut(s) 344
DpnI GATC 1 cut(s) 189
DpnII GATC 1 cut(s) 187
Eam1104I CTCTTC 1 cut(s) 279
EarI CTCTTC 1 cut(s) 279
EcoRI GAATTC 1 cut(s) 146
FaeI CATG 3 cut(s) 50, 108, 201
FaiI YATR 3 cut(s) 48, 106, 199
FalI AAGNNNNNCTT 2 cut(s) 134, 166
FatI CATG 3 cut(s) 46, 104, 197
Fnu4HI GCNGC 1 cut(s) 161
FokI GGATG 4 cut(s) 214, 252, 302, 335
Fsp4HI GCNGC 1 cut(s) 161
FspBI CTAG 1 cut(s) 224
GlaI GCGC 1 cut(s) 51
GluI GCNGC 1 cut(s) 161
HhaI GCGC 1 cut(s) 52
Hin1II CATG 3 cut(s) 50, 108, 201
Hin6I GCGC 1 cut(s) 50
HinP1I GCGC 1 cut(s) 50
HincII GTYRAC 1 cut(s) 181
HindII GTYRAC 1 cut(s) 181
HinfI GANTC 2 cut(s) 101, 351
Hpy166II GTNNAC 1 cut(s) 181
Hpy8I GTNNAC 1 cut(s) 181
HpyCH4III ACNGT 2 cut(s) 15, 260
HpyCH4V TGCA 5 cut(s) 66, 74, 83, 163, 263
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 250
Hsp92II CATG 3 cut(s) 50, 108, 201
HspAI GCGC 1 cut(s) 50
Kzo9I GATC 1 cut(s) 187
LmnI GCTCC 1 cut(s) 307
LpnPI CCDG 1 cut(s) 318
Lsp1109I GCAGC 1 cut(s) 147
LweI GCATC 3 cut(s) 61, 92, 157
MaeI CTAG 1 cut(s) 224
MalI GATC 1 cut(s) 189
MboI GATC 1 cut(s) 187
MboII GAAGA 2 cut(s) 182, 296
MfeI CAATTG 1 cut(s) 174
MflI RGATCY 1 cut(s) 187
MluCI AATT 4 cut(s) 146, 174, 232, 245
MmeI TCCRAC 1 cut(s) 300
MnlI CCTC 3 cut(s) 181, 198, 280
MseI TTAA 3 cut(s) 21, 54, 141
MspCI CTTAAG 1 cut(s) 53
MunI CAATTG 1 cut(s) 174
MwoI GCNNNNNNNGC 2 cut(s) 80, 250
NdeII GATC 1 cut(s) 187
NlaIII CATG 3 cut(s) 50, 108, 201
NspI RCATGY 1 cut(s) 50
PfeI GAWTC 2 cut(s) 101, 351
PkrI GCNGC 1 cut(s) 162
PsuI RGATCY 1 cut(s) 187
RsaI GTAC 1 cut(s) 345
RsaNI GTAC 1 cut(s) 344
SaqAI TTAA 3 cut(s) 21, 54, 141
SatI GCNGC 1 cut(s) 161
Sau3AI GATC 1 cut(s) 187
SetI ASST 1 cut(s) 125
SfaNI GCATC 3 cut(s) 61, 92, 157
SmlI CTYRAG 2 cut(s) 53, 212
SmoI CTYRAG 2 cut(s) 53, 212
Sse9I AATT 4 cut(s) 146, 174, 232, 245
SspMI CTAG 1 cut(s) 224
TaaI ACNGT 2 cut(s) 15, 260
TaqI TCGA 1 cut(s) 335
TasI AATT 4 cut(s) 146, 174, 232, 245
TfiI GAWTC 2 cut(s) 101, 351
Tru1I TTAA 3 cut(s) 21, 54, 141
Tru9I TTAA 3 cut(s) 21, 54, 141
TscAI CASTG 1 cut(s) 265
TseI GCWGC 1 cut(s) 160
TspDTI ATGAA 2 cut(s) 7, 93
TspGWI ACGGA 1 cut(s) 198
TspRI CASTG 1 cut(s) 265
Vha464I CTTAAG 1 cut(s) 53
XapI RAATTY 1 cut(s) 146
XceI RCATGY 1 cut(s) 50
XspI CTAG 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.