Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003846.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

30531 .. 32139

Gene Structure 1609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

atggtgcccaaggagctgatcacgcagcggatgcaggccggggccagaggcaggtcctggcaggtgttgctgaagatcctcaaaaacgacggcgttttgggcctctacgctggctactccgcaaccttgctcagaaacttgcccgccggggtcttgagctactcttccttcgagtacttgaaagccgcggttctgagcaagaccaagcaggcccaaatggagcccattcagagcgtgatttgcggcgccttggccggagctatctcggcctccattacgacgccgctggatgttgtgaagacgaggctgatgactcagaatgtgaataagaaaggaaagaaatcaaaggatgcaagtaatgagaagaagaagacctctaagatagggaaaaatctgaatgaggatttggttaataatggtgactctaactctaaggggaaggagtttgtcttattttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006839 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0010035 GO:0010038 GO:0010039 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0030001 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

152

Amino Acids

16.48

Weight (kDa)

9.97

Isoelectric Point (pI)

20.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	3 - 65	5.7e-10	Mitochondrial carrier protein
Mito_carr	PF00153	73 - 116	4.8e-12	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	52
Acc36I	ACCTGC	2 cut(s)	42, 52
AccB1I	GGYRCC	2 cut(s)	4, 245
AccII	CGCG	1 cut(s)	188
AciI	CCGC	7 cut(s)	28, 120, 144, 186, 188, 243, 284
AclWI	GGATC	1 cut(s)	70
AcoI	YGGCCR	1 cut(s)	252
AcuI	CTGAAG	1 cut(s)	92
AcyI	GRCGYC	2 cut(s)	246, 281
AfaI	GTAC	1 cut(s)	176
AfiI	CCNNNNNNNGG	1 cut(s)	51
AgsI	TTSAA	1 cut(s)	181
AjnI	CCWGG	1 cut(s)	56
AjuI	GAANNNNNNNTTGG	2 cut(s)	389, 421
AluBI	AGCT	3 cut(s)	16, 159, 260
AluI	AGCT	3 cut(s)	16, 159, 260
AlwI	GGATC	1 cut(s)	70
AlwNI	CAGNNNCTG	1 cut(s)	57
AoxI	GGCC	6 cut(s)	36, 42, 100, 210, 252, 267
ApeKI	GCWGC	1 cut(s)	25
AspLEI	GCGC	1 cut(s)	248
AspS9I	GGNCC	4 cut(s)	42, 54, 100, 211
AsuC2I	CCSGG	2 cut(s)	40, 148
AsuHPI	GGTGA	1 cut(s)	431
AvaII	GGWCC	1 cut(s)	54
BaeGI	GKGCMC	1 cut(s)	9
BanI	GGYRCC	2 cut(s)	4, 245
BanII	GRGCYC	1 cut(s)	225
BbsI	GAAGAC	2 cut(s)	305, 377
BbvI	GCAGC	1 cut(s)	37
BceAI	ACGGC	1 cut(s)	106
BciT130I	CCWGG	1 cut(s)	58
BclI	TGATCA	1 cut(s)	18
BcnI	CCSGG	2 cut(s)	40, 148
BfoI	RGCGCY	1 cut(s)	249
BfuAI	ACCTGC	2 cut(s)	42, 52
BisI	GCNGC	4 cut(s)	26, 186, 244, 284
BlsI	GCNGC	4 cut(s)	27, 187, 245, 285
BmcAI	AGTACT	1 cut(s)	176
Bme1390I	CCNGG	3 cut(s)	40, 58, 148
Bme18I	GGWCC	1 cut(s)	54
BmgT120I	GGNCC	4 cut(s)	42, 54, 100, 211
BmiI	GGNNCC	4 cut(s)	6, 43, 222, 247
BmrFI	CCNGG	3 cut(s)	40, 58, 148
BmsI	GCATC	2 cut(s)	21, 340
BpiI	GAAGAC	2 cut(s)	305, 377
BpuEI	CTTGAG	1 cut(s)	175
BpuMI	CCSGG	2 cut(s)	40, 148
BsaHI	GRCGYC	2 cut(s)	246, 281
BsaJI	CCNNGG	5 cut(s)	9, 39, 147, 186, 249
Bsc4I	CCNNNNNNNGG	1 cut(s)	51
BseBI	CCWGG	1 cut(s)	58
BseDI	CCNNGG	5 cut(s)	9, 39, 147, 186, 249
BseGI	GGATG	3 cut(s)	36, 295, 355
BseLI	CCNNNNNNNGG	1 cut(s)	51
BseMII	CTCAG	3 cut(s)	145, 185, 329
BseSI	GKGCMC	1 cut(s)	9
BseXI	GCAGC	1 cut(s)	37
Bsh1236I	CGCG	1 cut(s)	188
BshFI	GGCC	6 cut(s)	38, 44, 102, 212, 254, 269
BshNI	GGYRCC	2 cut(s)	4, 245
BsiSI	CCGG	3 cut(s)	39, 147, 255
BslI	CCNNNNNNNGG	1 cut(s)	51
BsnI	GGCC	6 cut(s)	38, 44, 102, 212, 254, 269
Bsp1286I	GDGCHC	2 cut(s)	9, 225
Bsp143I	GATC	2 cut(s)	18, 75
BspACI	CCGC	7 cut(s)	28, 120, 144, 186, 188, 243, 284
BspANI	GGCC	6 cut(s)	38, 44, 102, 212, 254, 269
BspCNI	CTCAG	3 cut(s)	144, 186, 328
BspFNI	CGCG	1 cut(s)	188
BspLI	GGNNCC	4 cut(s)	6, 43, 222, 247
BspMI	ACCTGC	2 cut(s)	42, 52
BspPI	GGATC	1 cut(s)	70
BspT107I	GGYRCC	2 cut(s)	4, 245
BssECI	CCNNGG	5 cut(s)	9, 39, 147, 186, 249
BssMI	GATC	2 cut(s)	18, 75
BssNI	GRCGYC	2 cut(s)	246, 281
BssT1I	CCWWGG	2 cut(s)	9, 249
Bst2UI	CCWGG	1 cut(s)	58
Bst6I	CTCTTC	1 cut(s)	169
BstACI	GRCGYC	2 cut(s)	246, 281
BstAPI	GCANNNNNTGC	2 cut(s)	31, 67
BstC8I	GCNNGC	4 cut(s)	36, 112, 144, 210
BstDEI	CTNAG	5 cut(s)	131, 194, 315, 378, 432
BstDSI	CCRYGG	1 cut(s)	186
BstF5I	GGATG	3 cut(s)	36, 295, 355
BstFNI	CGCG	1 cut(s)	188
BstH2I	RGCGCY	1 cut(s)	249
BstHHI	GCGC	1 cut(s)	248
BstKTI	GATC	2 cut(s)	21, 78
BstMBI	GATC	2 cut(s)	18, 75
BstMWI	GCNNNNNNNGC	7 cut(s)	13, 22, 31, 67, 99, 240, 266
BstNI	CCWGG	1 cut(s)	58
BstSCI	CCNGG	3 cut(s)	38, 56, 146
BstSLI	GKGCMC	1 cut(s)	9
BstUI	CGCG	1 cut(s)	188
BstV1I	GCAGC	1 cut(s)	37
BstV2I	GAAGAC	2 cut(s)	305, 377
BstX2I	RGATCY	1 cut(s)	75
BstYI	RGATCY	1 cut(s)	75
BsuRI	GGCC	6 cut(s)	38, 44, 102, 212, 254, 269
BtgI	CCRYGG	1 cut(s)	186
BtsCI	GGATG	3 cut(s)	36, 295, 355
BveI	ACCTGC	2 cut(s)	42, 52
Cac8I	GCNNGC	4 cut(s)	36, 112, 144, 210
CaiI	CAGNNNCTG	1 cut(s)	57
CfoI	GCGC	1 cut(s)	248
Cfr13I	GGNCC	4 cut(s)	42, 54, 100, 211
Cfr42I	CCGCGG	1 cut(s)	189
CseI	GACGC	1 cut(s)	289
Csp6I	GTAC	1 cut(s)	175
CviQI	GTAC	1 cut(s)	175
DdeI	CTNAG	5 cut(s)	131, 194, 315, 378, 432
DinI	GGCGCC	1 cut(s)	247
DpnI	GATC	2 cut(s)	20, 77
DpnII	GATC	2 cut(s)	18, 75
EaeI	YGGCCR	1 cut(s)	252
Eam1104I	CTCTTC	1 cut(s)	169
EarI	CTCTTC	1 cut(s)	169
Eco130I	CCWWGG	2 cut(s)	9, 249
Eco24I	GRGCYC	1 cut(s)	225
Eco47I	GGWCC	1 cut(s)	54
Eco57I	CTGAAG	1 cut(s)	92
EcoO109I	RGGNCCY	1 cut(s)	54
EcoRII	CCWGG	1 cut(s)	56
EcoT14I	CCWWGG	2 cut(s)	9, 249
EcoT38I	GRGCYC	1 cut(s)	225
EgeI	GGCGCC	1 cut(s)	247
EheI	GGCGCC	1 cut(s)	247
ErhI	CCWWGG	2 cut(s)	9, 249
FauI	CCCGC	1 cut(s)	151
FbaI	TGATCA	1 cut(s)	18
Fnu4HI	GCNGC	4 cut(s)	26, 186, 244, 284
FokI	GGATG	3 cut(s)	43, 302, 362
FriOI	GRGCYC	1 cut(s)	225
Fsp4HI	GCNGC	4 cut(s)	26, 186, 244, 284
GlaI	GCGC	1 cut(s)	247
GluI	GCNGC	4 cut(s)	26, 186, 244, 284
HaeII	RGCGCY	1 cut(s)	249
HaeIII	GGCC	6 cut(s)	38, 44, 102, 212, 254, 269
HapII	CCGG	3 cut(s)	39, 147, 255
HgaI	GACGC	1 cut(s)	289
HhaI	GCGC	1 cut(s)	248
Hin1I	GRCGYC	2 cut(s)	246, 281
Hin6I	GCGC	1 cut(s)	246
HinP1I	GCGC	1 cut(s)	246
HinfI	GANTC	2 cut(s)	313, 422
HpaII	CCGG	3 cut(s)	39, 147, 255
HphI	GGTGA	1 cut(s)	431
Hpy188I	TCNGA	5 cut(s)	134, 195, 231, 318, 396
Hpy188III	TCNNGA	1 cut(s)	154
Hpy99I	CGWCG	2 cut(s)	92, 283
HpyAV	CCTTC	2 cut(s)	178, 433
HpyCH4V	TGCA	2 cut(s)	34, 353
HpyF10VI	GCNNNNNNNGC	7 cut(s)	13, 22, 31, 67, 99, 240, 266
HpyF3I	CTNAG	5 cut(s)	131, 194, 315, 378, 432
Hsp92I	GRCGYC	2 cut(s)	246, 281
HspAI	GCGC	1 cut(s)	246
KasI	GGCGCC	1 cut(s)	245
Ksp22I	TGATCA	1 cut(s)	18
KspI	CCGCGG	1 cut(s)	189
Kzo9I	GATC	2 cut(s)	18, 75
LmnI	GCTCC	3 cut(s)	13, 220, 257
Lsp1109I	GCAGC	1 cut(s)	37
LweI	GCATC	2 cut(s)	21, 340
MaeIII	GTNAC	1 cut(s)	419
MalI	GATC	2 cut(s)	20, 77
MboI	GATC	2 cut(s)	18, 75
MboII	GAAGA	6 cut(s)	85, 156, 310, 376, 379, 382
MflI	RGATCY	1 cut(s)	75
MhlI	GDGCHC	2 cut(s)	9, 225
Mly113I	GGCGCC	1 cut(s)	246
MlyI	GAGTC	2 cut(s)	307, 416
MnlI	CCTC	7 cut(s)	41, 89, 113, 280, 297, 385, 394
MseI	TTAA	2 cut(s)	411, 457
MspA1I	CMGCKG	3 cut(s)	28, 188, 286
MspI	CCGG	3 cut(s)	39, 147, 255
MspR9I	CCNGG	3 cut(s)	40, 58, 148
MvaI	CCWGG	1 cut(s)	58
MvnI	CGCG	1 cut(s)	188
MwoI	GCNNNNNNNGC	7 cut(s)	13, 22, 31, 67, 99, 240, 266
NarI	GGCGCC	1 cut(s)	246
NciI	CCSGG	2 cut(s)	40, 148
NdeII	GATC	2 cut(s)	18, 75
NlaIV	GGNNCC	4 cut(s)	6, 43, 222, 247
NmeAIII	GCCGAG	1 cut(s)	245
NmuCI	GTSAC	1 cut(s)	419
PaqCI	CACCTGC	1 cut(s)	52
PkrI	GCNGC	4 cut(s)	27, 187, 245, 285
PleI	GAGTC	2 cut(s)	307, 416
PluTI	GGCGCC	1 cut(s)	249
PpsI	GAGTC	2 cut(s)	307, 416
PpuMI	RGGWCCY	1 cut(s)	54
Psp5II	RGGWCCY	1 cut(s)	54
Psp6I	CCWGG	1 cut(s)	56
PspGI	CCWGG	1 cut(s)	56
PspN4I	GGNNCC	4 cut(s)	6, 43, 222, 247
PspPI	GGNCC	4 cut(s)	42, 54, 100, 211
PspPPI	RGGWCCY	1 cut(s)	54
PstNI	CAGNNNCTG	1 cut(s)	57
PsuI	RGATCY	1 cut(s)	75
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
SacII	CCGCGG	1 cut(s)	189
SaqAI	TTAA	2 cut(s)	411, 457
SatI	GCNGC	4 cut(s)	26, 186, 244, 284
Sau3AI	GATC	2 cut(s)	18, 75
Sau96I	GGNCC	4 cut(s)	42, 54, 100, 211
ScaI	AGTACT	1 cut(s)	176
SchI	GAGTC	2 cut(s)	307, 416
ScrFI	CCNGG	3 cut(s)	40, 58, 148
SduI	GDGCHC	2 cut(s)	9, 225
SetI	ASST	7 cut(s)	18, 56, 66, 128, 161, 262, 377
SfaNI	GCATC	2 cut(s)	21, 340
SfoI	GGCGCC	1 cut(s)	247
Sfr303I	CCGCGG	1 cut(s)	189
SgrBI	CCGCGG	1 cut(s)	189
SinI	GGWCC	1 cut(s)	54
SmlI	CTYRAG	1 cut(s)	154
SmoI	CTYRAG	1 cut(s)	154
SsiI	CCGC	7 cut(s)	28, 120, 144, 186, 188, 243, 284
SspDI	GGCGCC	1 cut(s)	245
StyD4I	CCNGG	3 cut(s)	38, 56, 146
StyI	CCWWGG	2 cut(s)	9, 249
TaqI	TCGA	1 cut(s)	171
TatI	WGTACW	1 cut(s)	174
TauI	GCSGC	3 cut(s)	188, 246, 286
Tru1I	TTAA	2 cut(s)	411, 457
Tru9I	TTAA	2 cut(s)	411, 457
TseFI	GTSAC	1 cut(s)	419
TseI	GCWGC	1 cut(s)	25
Tsp45I	GTSAC	1 cut(s)	419
VpaK11BI	GGWCC	1 cut(s)	54
ZrmI	AGTACT	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.