Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003884.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

20206 .. 24430

Gene Structure 4225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

atgggagaagaagaagagcagcaacacctatccaattcgcccaacccagatacggaaattaccgaaaacccaaggcagcagcaagaagaagagtactcgtcagcatggccggcgtttcggttcgacgttcgtccacagagaacctaccacttctcccgccagttcagaactccctcaaaccctaacaattttctcaaggccgtcaaatggtcgccggatggttcttgctttctcaccagctctgaggacaacaccctccgtgttttcgcaataccggaaagtgggaatgaatatgttaacggctattctgcgcctgctgatgaagactcctatgctgcaagccttgttatcaatgagggagagtcggatggttttgttcatatatatgatcttcaaactggacaatgggtgtcaggcttccaagctgcattggatactgttaatggattctcttttcatccctttctgccaatggctacaacttcttcgggccaccgaagatttcttcctcctgatgatgggattgacgaattgcatttgagtggtcatgaaaactgtgcttctgtgtggagtttctctgttgcttcaatggaagagaacgtttgtcctatttggtgggatcgtggtggcggatctgggttggtgctatgggatccgatctgggatggatcgggcacactctggttgggttatggtttgctcgtggtggcgcgagctggcgtgacagaatggcagaaggtgggtggtccggcgaatctggtgtggcggggcttggatggcggctcagcggctgtggttttttctatttcttgggtggaggcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005697 GO:0006996 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010556 GO:0010557 GO:0010604 GO:0015030 GO:0016043 GO:0016604 GO:0019219 GO:0019222 GO:0022607 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032200 GO:0032202 GO:0032203 GO:0032991 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051276 GO:0051338 GO:0051347 GO:0051972 GO:0051973 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1990904 GO:2000112 GO:2000278 GO:2000573

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

274

Amino Acids

30.34

Weight (kDa)

4.45

Isoelectric Point (pI)

45.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR5	PF25175	63 - 163	8.4e-07	WDR5 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	712
AciI	CCGC	5 cut(s)	157, 630, 766, 780, 788
AclI	AACGTT	1 cut(s)	600
AclWI	GGATC	5 cut(s)	627, 640, 647, 660, 676
AcoI	YGGCCR	1 cut(s)	107
AfaI	GTAC	1 cut(s)	95
AfiI	CCNNNNNNNGG	4 cut(s)	52, 207, 281, 518
AgsI	TTSAA	2 cut(s)	395, 588
AluBI	AGCT	3 cut(s)	240, 425, 716
AluI	AGCT	3 cut(s)	240, 425, 716
AlwI	GGATC	5 cut(s)	627, 640, 647, 660, 676
AlwNI	CAGNNNCTG	1 cut(s)	791
AoxI	GGCC	3 cut(s)	107, 198, 490
ApeKI	GCWGC	5 cut(s)	19, 76, 79, 335, 425
AspLEI	GCGC	2 cut(s)	313, 712
AspS9I	GGNCC	2 cut(s)	490, 746
AsuHPI	GGTGA	1 cut(s)	226
AvaII	GGWCC	1 cut(s)	746
BaeGI	GKGCMC	1 cut(s)	677
BamHI	GGATCC	1 cut(s)	652
BauI	CACGAG	1 cut(s)	701
BbsI	GAAGAC	1 cut(s)	330
BbvI	GCAGC	5 cut(s)	31, 88, 91, 322, 412
BccI	CCATC	5 cut(s)	212, 362, 512, 659, 770
BceAI	ACGGC	2 cut(s)	185, 316
BciVI	GTATCC	1 cut(s)	427
BfuI	GTATCC	1 cut(s)	427
BisI	GCNGC	7 cut(s)	20, 77, 80, 336, 426, 781, 789
BlpI	GCTNAGC	1 cut(s)	784
BlsI	GCNGC	7 cut(s)	21, 78, 81, 337, 427, 782, 790
BmcAI	AGTACT	1 cut(s)	95
Bme18I	GGWCC	1 cut(s)	746
BmgT120I	GGNCC	2 cut(s)	490, 746
BmiI	GGNNCC	1 cut(s)	654
BoxI	GACNNNNGTC	1 cut(s)	129
BpiI	GAAGAC	1 cut(s)	330
Bpu1102I	GCTNAGC	1 cut(s)	784
BpuEI	CTTGAG	1 cut(s)	179
BsaJI	CCNNGG	1 cut(s)	71
BsaWI	WCCGGW	1 cut(s)	274
BsaXI	ACNNNNNCTCC	2 cut(s)	137, 167
Bsc4I	CCNNNNNNNGG	4 cut(s)	52, 207, 281, 518
Bse118I	RCCGGY	1 cut(s)	109
Bse1I	ACTGG	2 cut(s)	160, 403
BseDI	CCNNGG	1 cut(s)	71
BseGI	GGATG	5 cut(s)	223, 373, 457, 670, 781
BseLI	CCNNNNNNNGG	4 cut(s)	52, 207, 281, 518
BseMII	CTCAG	2 cut(s)	234, 798
BseNI	ACTGG	2 cut(s)	160, 403
BseSI	GKGCMC	1 cut(s)	677
BseXI	GCAGC	5 cut(s)	31, 88, 91, 322, 412
Bsh1236I	CGCG	1 cut(s)	712
BshFI	GGCC	3 cut(s)	109, 200, 492
BsiSI	CCGG	4 cut(s)	110, 215, 275, 749
BslI	CCNNNNNNNGG	4 cut(s)	52, 207, 281, 518
BsnI	GGCC	3 cut(s)	109, 200, 492
Bsp1286I	GDGCHC	1 cut(s)	677
Bsp143I	GATC	6 cut(s)	388, 619, 632, 652, 657, 668
Bsp1720I	GCTNAGC	1 cut(s)	784
BspACI	CCGC	5 cut(s)	157, 630, 766, 780, 788
BspANI	GGCC	3 cut(s)	109, 200, 492
BspCNI	CTCAG	2 cut(s)	235, 797
BspFNI	CGCG	1 cut(s)	712
BspHI	TCATGA	1 cut(s)	547
BspLI	GGNNCC	1 cut(s)	654
BspPI	GGATC	5 cut(s)	627, 640, 647, 660, 676
BspQI	GCTCTTC	1 cut(s)	9
BsrFI	RCCGGY	1 cut(s)	109
BsrI	ACTGG	2 cut(s)	160, 403
BssAI	RCCGGY	1 cut(s)	109
BssECI	CCNNGG	1 cut(s)	71
BssMI	GATC	6 cut(s)	388, 619, 632, 652, 657, 668
BssSI	CACGAG	1 cut(s)	701
BssT1I	CCWWGG	1 cut(s)	71
Bst2BI	CACGAG	1 cut(s)	701
Bst4CI	ACNGT	2 cut(s)	439, 557
Bst6I	CTCTTC	3 cut(s)	9, 84, 588
BstC8I	GCNNGC	5 cut(s)	111, 315, 340, 714, 718
BstDEI	CTNAG	2 cut(s)	243, 784
BstF5I	GGATG	5 cut(s)	223, 373, 457, 670, 781
BstFNI	CGCG	1 cut(s)	712
BstHHI	GCGC	2 cut(s)	313, 712
BstKTI	GATC	6 cut(s)	391, 622, 635, 655, 660, 671
BstMBI	GATC	6 cut(s)	388, 619, 632, 652, 657, 668
BstMWI	GCNNNNNNNGC	2 cut(s)	110, 777
BstPAI	GACNNNNGTC	1 cut(s)	129
BstSLI	GKGCMC	1 cut(s)	677
BstUI	CGCG	1 cut(s)	712
BstV1I	GCAGC	5 cut(s)	31, 88, 91, 322, 412
BstV2I	GAAGAC	1 cut(s)	330
BstX2I	RGATCY	2 cut(s)	632, 652
BstYI	RGATCY	2 cut(s)	632, 652
BsuI	GTATCC	1 cut(s)	427
BsuRI	GGCC	3 cut(s)	109, 200, 492
BtsCI	GGATG	5 cut(s)	223, 373, 457, 670, 781
Cac8I	GCNNGC	5 cut(s)	111, 315, 340, 714, 718
CaiI	CAGNNNCTG	1 cut(s)	791
CciI	TCATGA	1 cut(s)	547
CfoI	GCGC	2 cut(s)	313, 712
Cfr10I	RCCGGY	1 cut(s)	109
Cfr13I	GGNCC	2 cut(s)	490, 746
Csp6I	GTAC	1 cut(s)	94
CviAII	CATG	3 cut(s)	105, 548, 822
CviQI	GTAC	1 cut(s)	94
DdeI	CTNAG	2 cut(s)	243, 784
DpnI	GATC	6 cut(s)	390, 621, 634, 654, 659, 670
DpnII	GATC	6 cut(s)	388, 619, 632, 652, 657, 668
EaeI	YGGCCR	1 cut(s)	107
Eam1104I	CTCTTC	3 cut(s)	9, 84, 588
EarI	CTCTTC	3 cut(s)	9, 84, 588
EciI	GGCGGA	1 cut(s)	645
Eco130I	CCWWGG	1 cut(s)	71
Eco47I	GGWCC	1 cut(s)	746
EcoT14I	CCWWGG	1 cut(s)	71
ErhI	CCWWGG	1 cut(s)	71
FaeI	CATG	3 cut(s)	108, 551, 825
FatI	CATG	3 cut(s)	104, 547, 821
FauI	CCCGC	2 cut(s)	164, 759
Fnu4HI	GCNGC	7 cut(s)	20, 77, 80, 336, 426, 781, 789
FokI	GGATG	5 cut(s)	230, 380, 444, 677, 788
Fsp4HI	GCNGC	7 cut(s)	20, 77, 80, 336, 426, 781, 789
GlaI	GCGC	2 cut(s)	312, 711
GluI	GCNGC	7 cut(s)	20, 77, 80, 336, 426, 781, 789
HaeIII	GGCC	3 cut(s)	109, 200, 492
HapII	CCGG	4 cut(s)	110, 215, 275, 749
HhaI	GCGC	2 cut(s)	313, 712
Hin1II	CATG	3 cut(s)	108, 551, 825
Hin6I	GCGC	2 cut(s)	311, 710
HinP1I	GCGC	2 cut(s)	311, 710
HincII	GTYRAC	1 cut(s)	298
HindII	GTYRAC	1 cut(s)	298
HinfI	GANTC	4 cut(s)	326, 362, 447, 754
HpaI	GTTAAC	1 cut(s)	298
HpaII	CCGG	4 cut(s)	110, 215, 275, 749
HphI	GGTGA	1 cut(s)	226
Hpy166II	GTNNAC	2 cut(s)	134, 298
Hpy188I	TCNGA	4 cut(s)	167, 244, 367, 657
Hpy188III	TCNNGA	2 cut(s)	512, 548
Hpy8I	GTNNAC	2 cut(s)	134, 298
Hpy99I	CGWCG	1 cut(s)	128
HpyAV	CCTTC	1 cut(s)	730
HpyCH4III	ACNGT	2 cut(s)	439, 557
HpyCH4IV	ACGT	2 cut(s)	126, 600
HpyCH4V	TGCA	3 cut(s)	338, 428, 535
HpyF10VI	GCNNNNNNNGC	2 cut(s)	110, 777
HpyF3I	CTNAG	2 cut(s)	243, 784
HpySE526I	ACGT	2 cut(s)	126, 600
Hsp92II	CATG	3 cut(s)	108, 551, 825
HspAI	GCGC	2 cut(s)	311, 710
KroI	GCCGGC	1 cut(s)	109
KroNI	GCCGGC	1 cut(s)	111
KspAI	GTTAAC	1 cut(s)	298
Kzo9I	GATC	6 cut(s)	388, 619, 632, 652, 657, 668
LguI	GCTCTTC	1 cut(s)	9
Lsp1109I	GCAGC	5 cut(s)	31, 88, 91, 322, 412
MaeII	ACGT	2 cut(s)	126, 600
MaeIII	GTNAC	1 cut(s)	721
MalI	GATC	6 cut(s)	390, 621, 634, 654, 659, 670
MboI	GATC	6 cut(s)	388, 619, 632, 652, 657, 668
MflI	RGATCY	2 cut(s)	632, 652
MhlI	GDGCHC	1 cut(s)	677
MluCI	AATT	4 cut(s)	34, 57, 187, 530
MlyI	GAGTC	2 cut(s)	320, 371
MmeI	TCCRAC	1 cut(s)	345
MnlI	CCTC	6 cut(s)	184, 238, 266, 349, 519, 811
MroNI	GCCGGC	1 cut(s)	109
MseI	TTAA	2 cut(s)	297, 441
MslI	CAYNNNNRTG	2 cut(s)	384, 540
MspA1I	CMGCKG	1 cut(s)	788
MspI	CCGG	4 cut(s)	110, 215, 275, 749
MvnI	CGCG	1 cut(s)	712
MwoI	GCNNNNNNNGC	2 cut(s)	110, 777
NaeI	GCCGGC	1 cut(s)	111
NdeII	GATC	6 cut(s)	388, 619, 632, 652, 657, 668
NgoMIV	GCCGGC	1 cut(s)	109
NlaIII	CATG	3 cut(s)	108, 551, 825
NlaIV	GGNNCC	1 cut(s)	654
NmuCI	GTSAC	1 cut(s)	721
PagI	TCATGA	1 cut(s)	547
PciSI	GCTCTTC	1 cut(s)	9
PdiI	GCCGGC	1 cut(s)	111
PfeI	GAWTC	2 cut(s)	447, 754
PkrI	GCNGC	7 cut(s)	21, 78, 81, 337, 427, 782, 790
PleI	GAGTC	2 cut(s)	320, 370
PpsI	GAGTC	2 cut(s)	320, 370
PshAI	GACNNNNGTC	1 cut(s)	129
Psp1406I	AACGTT	1 cut(s)	600
PspN4I	GGNNCC	1 cut(s)	654
PspPI	GGNCC	2 cut(s)	490, 746
PstNI	CAGNNNCTG	1 cut(s)	791
PsuI	RGATCY	2 cut(s)	632, 652
RsaI	GTAC	1 cut(s)	95
RsaNI	GTAC	1 cut(s)	94
RseI	CAYNNNNRTG	2 cut(s)	384, 540
SapI	GCTCTTC	1 cut(s)	9
SaqAI	TTAA	2 cut(s)	297, 441
SatI	GCNGC	7 cut(s)	20, 77, 80, 336, 426, 781, 789
Sau3AI	GATC	6 cut(s)	388, 619, 632, 652, 657, 668
Sau96I	GGNCC	2 cut(s)	490, 746
ScaI	AGTACT	1 cut(s)	95
SchI	GAGTC	2 cut(s)	320, 371
SduI	GDGCHC	1 cut(s)	677
SetI	ASST	8 cut(s)	30, 129, 146, 242, 427, 603, 718, 741
SinI	GGWCC	1 cut(s)	746
SmiMI	CAYNNNNRTG	2 cut(s)	384, 540
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	4 cut(s)	34, 57, 187, 530
SsiI	CCGC	5 cut(s)	157, 630, 766, 780, 788
StyI	CCWWGG	1 cut(s)	71
TaaI	ACNGT	2 cut(s)	439, 557
TaiI	ACGT	2 cut(s)	129, 603
TaqI	TCGA	1 cut(s)	123
TasI	AATT	4 cut(s)	34, 57, 187, 530
TatI	WGTACW	1 cut(s)	93
TauI	GCSGC	2 cut(s)	783, 791
TfiI	GAWTC	2 cut(s)	447, 754
Tru1I	TTAA	2 cut(s)	297, 441
Tru9I	TTAA	2 cut(s)	297, 441
TseFI	GTSAC	1 cut(s)	721
TseI	GCWGC	5 cut(s)	19, 76, 79, 335, 425
Tsp45I	GTSAC	1 cut(s)	721
TspDTI	ATGAA	5 cut(s)	303, 336, 368, 446, 564
TspGWI	ACGGA	2 cut(s)	68, 248
VpaK11BI	GGWCC	1 cut(s)	746
ZrmI	AGTACT	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.