Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003885.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

57497 .. 57802

Gene Structure 306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

atggcctccactctctcactctcatcgtctctccgttatttcctccccccaacgcgtacatctcacgcgccggtgatccctcgcttcgcgtcgccgagactccgaccgcgctcgatcagacccctccgcgcgaatctcaaggccccgatttccgcattgggatcatcatcgccgtctgcgtcgtcaacggctgggatggcgggtcagaacaaggagaaggtggaggtgtttgactcggaggagcagctggcggtgcagctggccaagtacaccgccgacctatcggataagttctccaaagagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005777 GO:0005829 GO:0006081 GO:0006082 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016787 GO:0016788 GO:0017057 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0031090 GO:0034641 GO:0042126 GO:0042128 GO:0042579 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0050896 GO:0051156 GO:0051186 GO:0051704 GO:0051707 GO:0051775 GO:0052689 GO:0055086 GO:0071461 GO:0071704 GO:0071941 GO:0072524 GO:0098542 GO:0098588 GO:0098805 GO:1901135 GO:1901360 GO:1901564 GO:2001057

KEGG Pathways

Metabolic & Signaling

ko00030 ko01100 ko01110 ko01120 ko01130 ko01200 map00030 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

Glucosamine_iso

Protein Analysis

101

Amino Acids

10.91

Weight (kDa)

10.19

Isoelectric Point (pI)

60.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	6 cut(s)	55, 68, 89, 109, 129, 131
AciI	CCGC	6 cut(s)	107, 127, 153, 200, 251, 273
AclWI	GGATC	2 cut(s)	70, 169
AcoI	YGGCCR	1 cut(s)	261
AfaI	GTAC	2 cut(s)	58, 269
AflIII	ACRYGT	1 cut(s)	53
AluBI	AGCT	2 cut(s)	247, 259
AluI	AGCT	2 cut(s)	247, 259
Alw26I	GTCTC	2 cut(s)	33, 91
AlwI	GGATC	2 cut(s)	70, 169
AoxI	GGCC	3 cut(s)	3, 141, 261
ApeKI	GCWGC	2 cut(s)	244, 256
AspLEI	GCGC	3 cut(s)	70, 111, 131
AspS9I	GGNCC	1 cut(s)	142
AsuHPI	GGTGA	1 cut(s)	85
BalI	TGGCCA	1 cut(s)	263
BbvI	GCAGC	2 cut(s)	256, 268
BccI	CCATC	1 cut(s)	190
BceAI	ACGGC	2 cut(s)	157, 204
BcoDI	GTCTC	2 cut(s)	33, 91
BisI	GCNGC	2 cut(s)	245, 257
BlsI	GCNGC	2 cut(s)	246, 258
BmgT120I	GGNCC	1 cut(s)	142
BmiI	GGNNCC	1 cut(s)	144
BpuEI	CTTGAG	1 cut(s)	122
BsaBI	GATNNNNATC	1 cut(s)	166
Bse118I	RCCGGY	1 cut(s)	70
Bse8I	GATNNNNATC	1 cut(s)	166
BseGI	GGATG	1 cut(s)	201
BseJI	GATNNNNATC	1 cut(s)	166
BseRI	GAGGAG	1 cut(s)	254
BseXI	GCAGC	2 cut(s)	256, 268
BseYI	CCCAGC	1 cut(s)	191
BsgI	GTGCAG	1 cut(s)	275
Bsh1236I	CGCG	6 cut(s)	55, 68, 89, 109, 129, 131
Bsh1285I	CGRYCG	1 cut(s)	107
BshFI	GGCC	3 cut(s)	5, 143, 263
BsiEI	CGRYCG	1 cut(s)	107
BsiSI	CCGG	1 cut(s)	71
BsmAI	GTCTC	2 cut(s)	33, 91
BsmBI	CGTCTC	1 cut(s)	33
BsnI	GGCC	3 cut(s)	5, 143, 263
Bsp143I	GATC	3 cut(s)	75, 114, 161
BspACI	CCGC	6 cut(s)	107, 127, 153, 200, 251, 273
BspANI	GGCC	3 cut(s)	5, 143, 263
BspFNI	CGCG	6 cut(s)	55, 68, 89, 109, 129, 131
BspLI	GGNNCC	1 cut(s)	144
BspPI	GGATC	2 cut(s)	70, 169
BsrFI	RCCGGY	1 cut(s)	70
BssAI	RCCGGY	1 cut(s)	70
BssMI	GATC	3 cut(s)	75, 114, 161
BstC8I	GCNNGC	2 cut(s)	249, 261
BstF5I	GGATG	1 cut(s)	201
BstFNI	CGCG	6 cut(s)	55, 68, 89, 109, 129, 131
BstHHI	GCGC	3 cut(s)	70, 111, 131
BstKTI	GATC	3 cut(s)	78, 117, 164
BstMAI	GTCTC	2 cut(s)	33, 91
BstMBI	GATC	3 cut(s)	75, 114, 161
BstMCI	CGRYCG	1 cut(s)	107
BstMWI	GCNNNNNNNGC	2 cut(s)	197, 253
BstUI	CGCG	6 cut(s)	55, 68, 89, 109, 129, 131
BstV1I	GCAGC	2 cut(s)	256, 268
BsuRI	GGCC	3 cut(s)	5, 143, 263
BtgZI	GCGATG	1 cut(s)	153
BtsCI	GGATG	1 cut(s)	201
Cac8I	GCNNGC	2 cut(s)	249, 261
CfoI	GCGC	3 cut(s)	70, 111, 131
Cfr10I	RCCGGY	1 cut(s)	70
Cfr13I	GGNCC	1 cut(s)	142
CseI	GACGC	2 cut(s)	78, 168
Csp6I	GTAC	2 cut(s)	57, 268
CviJI	RGCY	6 cut(s)	5, 143, 191, 247, 259, 263
CviKI_1	RGCY	6 cut(s)	5, 143, 191, 247, 259, 263
CviQI	GTAC	2 cut(s)	57, 268
DpnI	GATC	3 cut(s)	77, 116, 163
DpnII	GATC	3 cut(s)	75, 114, 161
EaeI	YGGCCR	1 cut(s)	261
EcoO109I	RGGNCCY	1 cut(s)	142
Esp3I	CGTCTC	1 cut(s)	33
FauI	CCCGC	1 cut(s)	193
Fnu4HI	GCNGC	2 cut(s)	245, 257
FokI	GGATG	1 cut(s)	208
Fsp4HI	GCNGC	2 cut(s)	245, 257
GlaI	GCGC	3 cut(s)	69, 110, 130
GluI	GCNGC	2 cut(s)	245, 257
GsaI	CCCAGC	1 cut(s)	195
HaeIII	GGCC	3 cut(s)	5, 143, 263
HapII	CCGG	1 cut(s)	71
HgaI	GACGC	2 cut(s)	78, 168
HhaI	GCGC	3 cut(s)	70, 111, 131
Hin6I	GCGC	3 cut(s)	68, 109, 129
HinP1I	GCGC	3 cut(s)	68, 109, 129
HincII	GTYRAC	1 cut(s)	186
HindII	GTYRAC	1 cut(s)	186
HinfI	GANTC	3 cut(s)	99, 133, 233
HpaII	CCGG	1 cut(s)	71
HphI	GGTGA	1 cut(s)	85
Hpy166II	GTNNAC	2 cut(s)	186, 270
Hpy188I	TCNGA	5 cut(s)	104, 119, 207, 238, 286
Hpy8I	GTNNAC	2 cut(s)	186, 270
Hpy99I	CGWCG	2 cut(s)	94, 184
HpyAV	CCTTC	1 cut(s)	211
HpyCH4V	TGCA	1 cut(s)	256
HpyF10VI	GCNNNNNNNGC	2 cut(s)	197, 253
HspAI	GCGC	3 cut(s)	68, 109, 129
Kzo9I	GATC	3 cut(s)	75, 114, 161
LmnI	GCTCC	1 cut(s)	241
LpnPI	CCDG	4 cut(s)	84, 177, 233, 245
Lsp1109I	GCAGC	2 cut(s)	256, 268
MalI	GATC	3 cut(s)	77, 116, 163
MboI	GATC	3 cut(s)	75, 114, 161
MlsI	TGGCCA	1 cut(s)	263
MluI	ACGCGT	1 cut(s)	53
MluNI	TGGCCA	1 cut(s)	263
MlyI	GAGTC	2 cut(s)	93, 227
MmeI	TCCRAC	1 cut(s)	127
MnlI	CCTC	6 cut(s)	16, 53, 90, 134, 217, 232
Mox20I	TGGCCA	1 cut(s)	263
MscI	TGGCCA	1 cut(s)	263
Msp20I	TGGCCA	1 cut(s)	263
MspA1I	CMGCKG	2 cut(s)	247, 259
MspI	CCGG	1 cut(s)	71
MvnI	CGCG	6 cut(s)	55, 68, 89, 109, 129, 131
MwoI	GCNNNNNNNGC	2 cut(s)	197, 253
NdeII	GATC	3 cut(s)	75, 114, 161
NlaIV	GGNNCC	1 cut(s)	144
NmeAIII	GCCGAG	1 cut(s)	120
PcsI	WCGNNNNNNNCGW	1 cut(s)	176
PfeI	GAWTC	1 cut(s)	133
PkrI	GCNGC	2 cut(s)	246, 258
PleI	GAGTC	2 cut(s)	93, 227
PpsI	GAGTC	2 cut(s)	93, 227
PspFI	CCCAGC	1 cut(s)	191
PspN4I	GGNNCC	1 cut(s)	144
PspPI	GGNCC	1 cut(s)	142
PvuII	CAGCTG	2 cut(s)	247, 259
RsaI	GTAC	2 cut(s)	58, 269
RsaNI	GTAC	2 cut(s)	57, 268
SatI	GCNGC	2 cut(s)	245, 257
Sau3AI	GATC	3 cut(s)	75, 114, 161
Sau96I	GGNCC	1 cut(s)	142
SchI	GAGTC	2 cut(s)	93, 227
SetI	ASST	5 cut(s)	222, 228, 249, 261, 282
SgrAI	CRCCGGYG	1 cut(s)	70
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
SsiI	CCGC	6 cut(s)	107, 127, 153, 200, 251, 273
TaqI	TCGA	1 cut(s)	113
TatI	WGTACW	1 cut(s)	267
TfiI	GAWTC	1 cut(s)	133
TseI	GCWGC	2 cut(s)	244, 256
TspGWI	ACGGA	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.