Rmu_sc0003887.1_g000006

UDP-Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003887.1
N/A
Physical Location & Seq
Reverse (-)
24173 .. 26433
2261 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 870 bp
atgggaggttccaaatctgatcatagacctgacactcttgatggctccgctgattttcctttcgaaaccattccggatggtcttcaaaactcggatgaagataccacccaagaccacatattgcttggtgagtccatcagaaacaaattattggctcccttgcttgacctcatcacaaaactcaataacaccaccaccaatcctccagtgactcgcattgtctcggatgtgtatggaaagaagaaactgactgcctccaaggcaccaaactcagttctgtgtgtgtactttggtagtatagtgaatttgacacctaaacatcttgtcgaatttggttggggacttgctaattcccagctgccattcttgtgggtgataaggcctgatttggttgttggtgaatcagcaattttgccaccggagtttgtgaccgaaactaaagatagaggtctactagcaagttggtgtccgcaagaggaagtgcttagccaccggagggtttttgacacaatcagtagtgatgtgaagagagatgaagtagagaggcttgttaaagagttaatggagggcgagaagggtaagaaaatgagacataaggccatggagtggaagaaacgtgcagaagaagcaacttctccacatgtatataagcaccacatgaagagcagaaaaggggaggacgcaacggagcacagtagcggtggaaaagcagaagaagaaagcagcaaaggagcttggaagacaaaaggttcagacctcattccatcgctctccaccaccttttcttttctgttgcatgccctccccacaacggcacctccgggtgtcaatgatgtcaaagacaacatgccggagcagcgtctccaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

289

Amino Acids

32.13

Weight (kDa)

6.22

Isoelectric Point (pI)

42.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 262, 814
AccB7I CCANNNNNTGG 1 cut(s) 606
AccI GTMKAC 1 cut(s) 451
AccIII TCCGGA 1 cut(s) 73
AciI CCGC 3 cut(s) 48, 470, 699
AcsI RAATTY 2 cut(s) 304, 329
AfaI GTAC 1 cut(s) 287
AfiI CCNNNNNNNGG 3 cut(s) 496, 606, 811
AflIII ACRYGT 1 cut(s) 640
AgsI TTSAA 1 cut(s) 86
AluBI AGCT 2 cut(s) 358, 734
AluI AGCT 2 cut(s) 358, 734
Alw21I GWGCWC 1 cut(s) 693
Alw26I GTCTC 3 cut(s) 226, 583, 866
Aor13HI TCCGGA 1 cut(s) 73
AoxI GGCC 2 cut(s) 380, 597
ApeKI GCWGC 3 cut(s) 358, 723, 856
ApoI RAATTY 2 cut(s) 304, 329
Asp700I GAANNNNTTC 1 cut(s) 69
AsuC2I CCSGG 1 cut(s) 822
AsuHPI GGTGA 3 cut(s) 140, 385, 410
AsuII TTCGAA 1 cut(s) 63
BanI GGYRCC 2 cut(s) 262, 814
BbsI GAAGAC 2 cut(s) 74, 746
Bbv12I GWGCWC 1 cut(s) 693
BbvI GCAGC 2 cut(s) 345, 735
BccI CCATC 4 cut(s) 35, 71, 143, 772
BceAI ACGGC 1 cut(s) 828
BclI TGATCA 1 cut(s) 19
BcnI CCSGG 1 cut(s) 822
BcoDI GTCTC 3 cut(s) 226, 583, 866
BfaI CTAG 1 cut(s) 455
BglI GCCNNNNNGGC 1 cut(s) 260
BisI GCNGC 3 cut(s) 359, 724, 857
BlpI GCTNAGC 1 cut(s) 485
BlsI GCNGC 3 cut(s) 360, 725, 858
Bme1390I CCNGG 1 cut(s) 822
BmiI GGNNCC 5 cut(s) 10, 46, 156, 264, 816
BmrFI CCNGG 1 cut(s) 822
BpiI GAAGAC 2 cut(s) 74, 746
BpmI CTGGAG 1 cut(s) 189
Bpu1102I GCTNAGC 1 cut(s) 485
Bpu14I TTCGAA 1 cut(s) 63
BpuMI CCSGG 1 cut(s) 822
BsaJI CCNNGG 2 cut(s) 258, 600
BsaWI WCCGGW 3 cut(s) 73, 418, 492
BsaXI ACNNNNNCTCC 4 cut(s) 187, 217, 802, 832
Bsc4I CCNNNNNNNGG 3 cut(s) 496, 606, 811
Bse1I ACTGG 1 cut(s) 206
BseAI TCCGGA 1 cut(s) 73
BseDI CCNNGG 2 cut(s) 258, 600
BseGI GGATG 3 cut(s) 82, 100, 232
BseLI CCNNNNNNNGG 3 cut(s) 496, 606, 811
BseMII CTCAG 1 cut(s) 285
BseNI ACTGG 1 cut(s) 206
BseXI GCAGC 2 cut(s) 345, 735
BseYI CCCAGC 1 cut(s) 354
BsgI GTGCAG 1 cut(s) 639
BshFI GGCC 2 cut(s) 382, 599
BshNI GGYRCC 2 cut(s) 262, 814
BsiHKAI GWGCWC 1 cut(s) 693
BsiSI CCGG 5 cut(s) 74, 419, 493, 821, 851
BslFI GGGAC 1 cut(s) 354
BslI CCNNNNNNNGG 3 cut(s) 496, 606, 811
BsmAI GTCTC 3 cut(s) 226, 583, 866
BsmBI CGTCTC 1 cut(s) 866
BsmFI GGGAC 1 cut(s) 354
BsnI GGCC 2 cut(s) 382, 599
Bsp119I TTCGAA 1 cut(s) 63
Bsp1286I GDGCHC 1 cut(s) 693
Bsp13I TCCGGA 1 cut(s) 73
Bsp143I GATC 1 cut(s) 19
Bsp1720I GCTNAGC 1 cut(s) 485
Bsp19I CCATGG 1 cut(s) 600
BspACI CCGC 3 cut(s) 48, 470, 699
BspANI GGCC 2 cut(s) 382, 599
BspCNI CTCAG 1 cut(s) 284
BspEI TCCGGA 1 cut(s) 73
BspLI GGNNCC 5 cut(s) 10, 46, 156, 264, 816
BspQI GCTCTTC 1 cut(s) 656
BspT104I TTCGAA 1 cut(s) 63
BspT107I GGYRCC 2 cut(s) 262, 814
BsrI ACTGG 1 cut(s) 206
BssECI CCNNGG 2 cut(s) 258, 600
BssMI GATC 1 cut(s) 19
BssT1I CCWWGG 2 cut(s) 258, 600
Bst4CI ACNGT 1 cut(s) 695
Bst6I CTCTTC 2 cut(s) 521, 656
BstBI TTCGAA 1 cut(s) 63
BstC8I GCNNGC 1 cut(s) 798
BstDEI CTNAG 2 cut(s) 271, 485
BstDSI CCRYGG 1 cut(s) 600
BstF5I GGATG 3 cut(s) 82, 100, 232
BstKTI GATC 1 cut(s) 22
BstMAI GTCTC 3 cut(s) 226, 583, 866
BstMBI GATC 1 cut(s) 19
BstMWI GCNNNNNNNGC 3 cut(s) 260, 626, 856
BstNSI RCATGY 3 cut(s) 644, 800, 850
BstSCI CCNGG 1 cut(s) 820
BstV1I GCAGC 2 cut(s) 345, 735
BstV2I GAAGAC 2 cut(s) 74, 746
BstXI CCANNNNNNTGG 1 cut(s) 369
BsuRI GGCC 2 cut(s) 382, 599
BtgI CCRYGG 1 cut(s) 600
BtgZI GCGATG 1 cut(s) 750
BtsCI GGATG 3 cut(s) 82, 100, 232
BtsIMutI CAGTG 1 cut(s) 213
Cac8I GCNNGC 1 cut(s) 798
CseI GACGC 2 cut(s) 689, 848
Csp6I GTAC 1 cut(s) 286
CviAII CATG 5 cut(s) 601, 641, 658, 797, 847
CviJI RGCY 8 cut(s) 45, 155, 358, 382, 489, 547, 599, 734
CviKI_1 RGCY 8 cut(s) 45, 155, 358, 382, 489, 547, 599, 734
CviQI GTAC 1 cut(s) 286
DdeI CTNAG 2 cut(s) 271, 485
DpnI GATC 1 cut(s) 21
DpnII GATC 1 cut(s) 19
Eam1104I CTCTTC 2 cut(s) 521, 656
EarI CTCTTC 2 cut(s) 521, 656
Eco130I CCWWGG 2 cut(s) 258, 600
Eco147I AGGCCT 1 cut(s) 382
EcoT14I CCWWGG 2 cut(s) 258, 600
ErhI CCWWGG 2 cut(s) 258, 600
Esp3I CGTCTC 1 cut(s) 866
FaeI CATG 5 cut(s) 604, 644, 661, 800, 850
FaqI GGGAC 1 cut(s) 354
FatI CATG 5 cut(s) 600, 640, 657, 796, 846
FbaI TGATCA 1 cut(s) 19
FblI GTMKAC 1 cut(s) 451
Fnu4HI GCNGC 3 cut(s) 359, 724, 857
FokI GGATG 3 cut(s) 89, 107, 239
Fsp4HI GCNGC 3 cut(s) 359, 724, 857
FspBI CTAG 1 cut(s) 455
GluI GCNGC 3 cut(s) 359, 724, 857
GsaI CCCAGC 1 cut(s) 358
GsuI CTGGAG 1 cut(s) 189
HaeIII GGCC 2 cut(s) 382, 599
HapII CCGG 5 cut(s) 74, 419, 493, 821, 851
HgaI GACGC 2 cut(s) 689, 848
Hin1II CATG 5 cut(s) 604, 644, 661, 800, 850
HinfI GANTC 3 cut(s) 131, 211, 401
HpaII CCGG 5 cut(s) 74, 419, 493, 821, 851
HphI GGTGA 3 cut(s) 140, 385, 410
Hpy166II GTNNAC 2 cut(s) 286, 452
Hpy188I TCNGA 5 cut(s) 19, 94, 140, 226, 754
Hpy188III TCNNGA 2 cut(s) 38, 74
Hpy8I GTNNAC 2 cut(s) 286, 452
HpyAV CCTTC 1 cut(s) 568
HpyCH4III ACNGT 1 cut(s) 695
HpyCH4IV ACGT 1 cut(s) 616
HpyCH4V TGCA 2 cut(s) 620, 796
HpyF10VI GCNNNNNNNGC 3 cut(s) 260, 626, 856
HpyF3I CTNAG 2 cut(s) 271, 485
HpySE526I ACGT 1 cut(s) 616
Hsp92II CATG 5 cut(s) 604, 644, 661, 800, 850
Kpn2I TCCGGA 1 cut(s) 73
Ksp22I TGATCA 1 cut(s) 19
Kzo9I GATC 1 cut(s) 19
LguI GCTCTTC 1 cut(s) 656
LmnI GCTCC 5 cut(s) 50, 160, 688, 731, 853
LpnPI CCDG 9 cut(s) 42, 87, 219, 368, 396, 432, 506, 834, 864
Lsp1109I GCAGC 2 cut(s) 345, 735
MaeI CTAG 1 cut(s) 455
MaeII ACGT 1 cut(s) 616
MaeIII GTNAC 2 cut(s) 208, 427
MalI GATC 1 cut(s) 21
MboI GATC 1 cut(s) 19
MhlI GDGCHC 1 cut(s) 693
MluCI AATT 5 cut(s) 146, 304, 329, 349, 408
MlyI GAGTC 2 cut(s) 140, 205
MroI TCCGGA 1 cut(s) 73
MroXI GAANNNNTTC 1 cut(s) 69
MseI TTAA 2 cut(s) 552, 560
MslI CAYNNNNRTG 1 cut(s) 367
MspA1I CMGCKG 2 cut(s) 50, 358
MspI CCGG 5 cut(s) 74, 419, 493, 821, 851
MspR9I CCNGG 1 cut(s) 822
MwoI GCNNNNNNNGC 3 cut(s) 260, 626, 856
NciI CCSGG 1 cut(s) 822
NcoI CCATGG 1 cut(s) 600
NdeII GATC 1 cut(s) 19
NlaIII CATG 5 cut(s) 604, 644, 661, 800, 850
NlaIV GGNNCC 5 cut(s) 10, 46, 156, 264, 816
NmuCI GTSAC 2 cut(s) 208, 427
NspI RCATGY 3 cut(s) 644, 800, 850
NspV TTCGAA 1 cut(s) 63
PaeI GCATGC 1 cut(s) 800
PceI AGGCCT 1 cut(s) 382
PciI ACATGT 1 cut(s) 640
PciSI GCTCTTC 1 cut(s) 656
PdmI GAANNNNTTC 1 cut(s) 69
PfeI GAWTC 1 cut(s) 401
PflMI CCANNNNNTGG 1 cut(s) 606
PkrI GCNGC 3 cut(s) 360, 725, 858
PleI GAGTC 2 cut(s) 139, 205
PpsI GAGTC 2 cut(s) 139, 205
PscI ACATGT 1 cut(s) 640
PspFI CCCAGC 1 cut(s) 354
PspN4I GGNNCC 5 cut(s) 10, 46, 156, 264, 816
PvuII CAGCTG 1 cut(s) 358
RsaI GTAC 1 cut(s) 287
RsaNI GTAC 1 cut(s) 286
RseI CAYNNNNRTG 1 cut(s) 367
SapI GCTCTTC 1 cut(s) 656
SaqAI TTAA 2 cut(s) 552, 560
SatI GCNGC 3 cut(s) 359, 724, 857
Sau3AI GATC 1 cut(s) 19
SchI GAGTC 2 cut(s) 140, 205
ScrFI CCNGG 1 cut(s) 822
SduI GDGCHC 1 cut(s) 693
SfuI TTCGAA 1 cut(s) 63
SmiMI CAYNNNNRTG 1 cut(s) 367
SphI GCATGC 1 cut(s) 800
Sse9I AATT 5 cut(s) 146, 304, 329, 349, 408
SseBI AGGCCT 1 cut(s) 382
SsiI CCGC 3 cut(s) 48, 470, 699
SspMI CTAG 1 cut(s) 455
StuI AGGCCT 1 cut(s) 382
StyD4I CCNGG 1 cut(s) 820
StyI CCWWGG 2 cut(s) 258, 600
TaaI ACNGT 1 cut(s) 695
TaiI ACGT 1 cut(s) 619
TaqI TCGA 2 cut(s) 63, 327
TaqII GACCGA 1 cut(s) 446
TasI AATT 5 cut(s) 146, 304, 329, 349, 408
TatI WGTACW 1 cut(s) 285
TfiI GAWTC 1 cut(s) 401
Tru1I TTAA 2 cut(s) 552, 560
Tru9I TTAA 2 cut(s) 552, 560
TscAI CASTG 1 cut(s) 213
TseFI GTSAC 2 cut(s) 208, 427
TseI GCWGC 3 cut(s) 358, 723, 856
Tsp45I GTSAC 2 cut(s) 208, 427
TspDTI ATGAA 3 cut(s) 111, 549, 674
TspGWI ACGGA 1 cut(s) 701
TspRI CASTG 1 cut(s) 213
Van91I CCANNNNNTGG 1 cut(s) 606
XapI RAATTY 2 cut(s) 304, 329
XceI RCATGY 3 cut(s) 644, 800, 850
XcmI CCANNNNNNNNNTGG 1 cut(s) 122
XmiI GTMKAC 1 cut(s) 451
XmnI GAANNNNTTC 1 cut(s) 69
XspI CTAG 1 cut(s) 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.