Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003887.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

50175 .. 55031

Gene Structure 4857 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

atggcggtgaagaaagagagagatagagagggagtggaggttacgtggcggggcgggattgggtggcgtgtaactgtttctttttctgtattaaagtcggatattcggacttccggaggggcaatgtgggtcgttggatccggcagatttttggcagctgcagtcctcattactgtttgcattttcgtctacaagcagtcacttaactccagcaatgaacgcaacctgttctcttatcacgaagcaggagtaacacatgtatcggttactgtaggtgctggctacataggctctcatgctgcacttaggctgctgaaggattcatatcgtgtaaccatagtggataatctttctcgaggaaatattggtgctgttaggattcttcagcagttatttccagaacctgggaggcttcagtttgttaaagctgacctgggagatgcaaaagctgtcaataaaatcttctcagaaaatgcatttgatgctgttatgcattttgcagctgttgcttatgttggtgaaagtacacttgaacctcttaggtattatcataatatcacatcaaatactctattggttttggaggcaatggcagcacacaatgtaaagacattgatctattctagtacttgtgccacatgcggcgaacccaagacaatgccggttacggaagaaactaagcaaccggacattgacttgcaactttccaagacttgcacaattgaacatcttcctcatccgtccatctccttttatcttgggtatcttcactttgatctccctcttgtccggccactggacgggtgtctcccctttgttcggccatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005996 GO:0008150 GO:0008152 GO:0009058 GO:0009832 GO:0009987 GO:0012505 GO:0016051 GO:0016853 GO:0016854 GO:0016857 GO:0019321 GO:0019322 GO:0019566 GO:0019567 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044238 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046364 GO:0050373 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Epimerase GDP_Man_Dehyd

Protein Analysis

275

Amino Acids

30.29

Weight (kDa)

8.24

Isoelectric Point (pI)

41.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Polysacc_synt_2	PF02719	87 - 212	4.3e-06	Polysaccharide biosynthesis protein
Epimerase	PF01370	89 - 227	4.9e-25	NAD dependent epimerase/dehydratase family
GDP_Man_Dehyd	PF16363	89 - 227	7.5e-25	GDP-mannose 4,6 dehydratase
3Beta_HSD	PF01073	89 - 217	1.8e-07	3-beta hydroxysteroid dehydrogenase/isomerase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	404
AccI	GTMKAC	1 cut(s)	189
AccIII	TCCGGA	1 cut(s)	113
AciI	CCGC	4 cut(s)	5, 49, 54, 642
AclWI	GGATC	2 cut(s)	132, 145
AcoI	YGGCCR	2 cut(s)	791, 821
AcuI	CTGAAG	3 cut(s)	335, 368, 398
AfaI	GTAC	2 cut(s)	526, 628
AfiI	CCNNNNNNNGG	4 cut(s)	404, 796, 800, 819
AflIII	ACRYGT	1 cut(s)	256
AgsI	TTSAA	2 cut(s)	533, 725
AjnI	CCWGG	2 cut(s)	403, 432
AluBI	AGCT	4 cut(s)	158, 428, 449, 503
AluI	AGCT	4 cut(s)	158, 428, 449, 503
Alw26I	GTCTC	1 cut(s)	812
AlwI	GGATC	2 cut(s)	132, 145
AlwNI	CAGNNNCTG	1 cut(s)	404
Ama87I	CYCGRG	1 cut(s)	354
Aor13HI	TCCGGA	1 cut(s)	113
AoxI	GGCC	2 cut(s)	791, 821
ApeKI	GCWGC	6 cut(s)	155, 158, 299, 310, 500, 593
Asp700I	GAANNNNTTC	1 cut(s)	729
AsuHPI	GGTGA	2 cut(s)	19, 530
AvaI	CYCGRG	1 cut(s)	354
BaeI	ACNNNNGTAYC	2 cut(s)	243, 276
BamHI	GGATCC	1 cut(s)	137
BbvI	GCAGC	6 cut(s)	145, 167, 286, 297, 512, 605
BccI	CCATC	1 cut(s)	752
BciT130I	CCWGG	2 cut(s)	405, 434
BcoDI	GTCTC	1 cut(s)	812
BfaI	CTAG	1 cut(s)	624
BfmI	CTRYAG	2 cut(s)	159, 270
BisI	GCNGC	7 cut(s)	156, 159, 300, 311, 501, 594, 643
BlsI	GCNGC	7 cut(s)	157, 160, 301, 312, 502, 595, 644
BmcAI	AGTACT	1 cut(s)	628
Bme1390I	CCNGG	2 cut(s)	405, 434
BmeT110I	CYCGRG	1 cut(s)	354
BmiI	GGNNCC	1 cut(s)	139
BmrFI	CCNGG	2 cut(s)	405, 434
BmsI	GCATC	2 cut(s)	430, 472
BoxI	GACNNNNGTC	1 cut(s)	804
BpmI	CTGGAG	1 cut(s)	193
BsaAI	YACGTR	1 cut(s)	45
BsaBI	GATNNNNATC	1 cut(s)	324
BsaJI	CCNNGG	2 cut(s)	404, 433
BsaWI	WCCGGW	2 cut(s)	113, 685
BsaXI	ACNNNNNCTCC	4 cut(s)	24, 29, 54, 59
Bsc4I	CCNNNNNNNGG	4 cut(s)	404, 796, 800, 819
Bse118I	RCCGGY	1 cut(s)	661
Bse1I	ACTGG	1 cut(s)	801
Bse3DI	GCAATG	3 cut(s)	129, 220, 594
Bse8I	GATNNNNATC	1 cut(s)	324
BseAI	TCCGGA	1 cut(s)	113
BseBI	CCWGG	2 cut(s)	405, 434
BseDI	CCNNGG	2 cut(s)	404, 433
BseGI	GGATG	1 cut(s)	736
BseJI	GATNNNNATC	1 cut(s)	324
BseLI	CCNNNNNNNGG	4 cut(s)	404, 796, 800, 819
BseMI	GCAATG	3 cut(s)	129, 220, 594
BseMII	CTCAG	1 cut(s)	480
BseNI	ACTGG	1 cut(s)	801
BseXI	GCAGC	6 cut(s)	145, 167, 286, 297, 512, 605
BsgI	GTGCAG	1 cut(s)	285
BshFI	GGCC	2 cut(s)	793, 823
BsiHKCI	CYCGRG	1 cut(s)	354
BsiSI	CCGG	5 cut(s)	114, 141, 662, 686, 790
BslI	CCNNNNNNNGG	4 cut(s)	404, 796, 800, 819
BsmAI	GTCTC	1 cut(s)	812
BsnI	GGCC	2 cut(s)	793, 823
BsoBI	CYCGRG	1 cut(s)	354
Bsp13I	TCCGGA	1 cut(s)	113
Bsp143I	GATC	3 cut(s)	137, 615, 775
BspACI	CCGC	4 cut(s)	5, 49, 54, 642
BspANI	GGCC	2 cut(s)	793, 823
BspCNI	CTCAG	1 cut(s)	479
BspEI	TCCGGA	1 cut(s)	113
BspLI	GGNNCC	1 cut(s)	139
BspMAI	CTGCAG	1 cut(s)	163
BspPI	GGATC	2 cut(s)	132, 145
BsrDI	GCAATG	3 cut(s)	129, 220, 594
BsrFI	RCCGGY	1 cut(s)	661
BsrI	ACTGG	1 cut(s)	801
BssAI	RCCGGY	1 cut(s)	661
BssECI	CCNNGG	2 cut(s)	404, 433
BssMI	GATC	3 cut(s)	137, 615, 775
Bst2UI	CCWGG	2 cut(s)	405, 434
Bst4CI	ACNGT	3 cut(s)	76, 175, 271
BstAPI	GCANNNNNTGC	2 cut(s)	482, 506
BstBAI	YACGTR	1 cut(s)	45
BstC8I	GCNNGC	1 cut(s)	280
BstDEI	CTNAG	4 cut(s)	305, 466, 539, 678
BstF5I	GGATG	1 cut(s)	736
BstKTI	GATC	3 cut(s)	140, 618, 778
BstMAI	GTCTC	1 cut(s)	812
BstMBI	GATC	3 cut(s)	137, 615, 775
BstMWI	GCNNNNNNNGC	5 cut(s)	219, 288, 482, 506, 593
BstNI	CCWGG	2 cut(s)	405, 434
BstNSI	RCATGY	2 cut(s)	260, 642
BstPAI	GACNNNNGTC	1 cut(s)	804
BstSCI	CCNGG	2 cut(s)	403, 432
BstSFI	CTRYAG	2 cut(s)	159, 270
BstV1I	GCAGC	6 cut(s)	145, 167, 286, 297, 512, 605
BstX2I	RGATCY	1 cut(s)	137
BstYI	RGATCY	1 cut(s)	137
BsuRI	GGCC	2 cut(s)	793, 823
BtsCI	GGATG	1 cut(s)	736
BtsIMutI	CAGTG	1 cut(s)	794
Cac8I	GCNNGC	1 cut(s)	280
CaiI	CAGNNNCTG	1 cut(s)	404
Cfr10I	RCCGGY	1 cut(s)	661
Csp6I	GTAC	2 cut(s)	525, 627
CviAII	CATG	3 cut(s)	257, 296, 639
CviQI	GTAC	2 cut(s)	525, 627
DdeI	CTNAG	4 cut(s)	305, 466, 539, 678
DpnI	GATC	3 cut(s)	139, 617, 777
DpnII	GATC	3 cut(s)	137, 615, 775
EaeI	YGGCCR	2 cut(s)	791, 821
Eco57I	CTGAAG	3 cut(s)	335, 368, 398
Eco88I	CYCGRG	1 cut(s)	354
EcoRII	CCWGG	2 cut(s)	403, 432
EcoT22I	ATGCAT	2 cut(s)	478, 495
FaeI	CATG	3 cut(s)	260, 299, 642
FatI	CATG	3 cut(s)	256, 295, 638
FauI	CCCGC	2 cut(s)	42, 47
FblI	GTMKAC	1 cut(s)	189
Fnu4HI	GCNGC	7 cut(s)	156, 159, 300, 311, 501, 594, 643
FokI	GGATG	1 cut(s)	723
Fsp4HI	GCNGC	7 cut(s)	156, 159, 300, 311, 501, 594, 643
FspBI	CTAG	1 cut(s)	624
GluI	GCNGC	7 cut(s)	156, 159, 300, 311, 501, 594, 643
GsuI	CTGGAG	1 cut(s)	193
HaeIII	GGCC	2 cut(s)	793, 823
HapII	CCGG	5 cut(s)	114, 141, 662, 686, 790
Hin1II	CATG	3 cut(s)	260, 299, 642
HinfI	GANTC	2 cut(s)	320, 379
HpaII	CCGG	5 cut(s)	114, 141, 662, 686, 790
HphI	GGTGA	2 cut(s)	19, 530
Hpy166II	GTNNAC	2 cut(s)	190, 527
Hpy188I	TCNGA	3 cut(s)	100, 108, 469
Hpy188III	TCNNGA	4 cut(s)	114, 239, 354, 398
Hpy8I	GTNNAC	2 cut(s)	190, 527
HpyAV	CCTTC	1 cut(s)	310
HpyCH4III	ACNGT	3 cut(s)	76, 175, 271
HpyCH4IV	ACGT	1 cut(s)	44
HpyCH4V	TGCA	9 cut(s)	161, 180, 302, 443, 476, 493, 500, 700, 717
HpyF10VI	GCNNNNNNNGC	5 cut(s)	219, 288, 482, 506, 593
HpyF3I	CTNAG	4 cut(s)	305, 466, 539, 678
HpySE526I	ACGT	1 cut(s)	44
Hsp92II	CATG	3 cut(s)	260, 299, 642
Kpn2I	TCCGGA	1 cut(s)	113
Kzo9I	GATC	3 cut(s)	137, 615, 775
Lsp1109I	GCAGC	6 cut(s)	145, 167, 286, 297, 512, 605
LweI	GCATC	2 cut(s)	430, 472
MaeI	CTAG	1 cut(s)	624
MaeII	ACGT	1 cut(s)	44
MaeIII	GTNAC	7 cut(s)	40, 70, 198, 250, 265, 331, 664
MalI	GATC	3 cut(s)	139, 617, 777
MboI	GATC	3 cut(s)	137, 615, 775
MboII	GAAGA	6 cut(s)	22, 374, 454, 683, 722, 758
MfeI	CAATTG	1 cut(s)	720
MflI	RGATCY	1 cut(s)	137
MluCI	AATT	1 cut(s)	720
MmeI	TCCRAC	2 cut(s)	78, 115
Mph1103I	ATGCAT	2 cut(s)	478, 495
MroI	TCCGGA	1 cut(s)	113
MroXI	GAANNNNTTC	1 cut(s)	729
MseI	TTAA	3 cut(s)	92, 204, 423
MspA1I	CMGCKG	2 cut(s)	158, 503
MspI	CCGG	5 cut(s)	114, 141, 662, 686, 790
MspR9I	CCNGG	2 cut(s)	405, 434
MunI	CAATTG	1 cut(s)	720
MvaI	CCWGG	2 cut(s)	405, 434
MwoI	GCNNNNNNNGC	5 cut(s)	219, 288, 482, 506, 593
NdeII	GATC	3 cut(s)	137, 615, 775
NlaIII	CATG	3 cut(s)	260, 299, 642
NlaIV	GGNNCC	1 cut(s)	139
NmuCI	GTSAC	1 cut(s)	198
NsiI	ATGCAT	2 cut(s)	478, 495
NspI	RCATGY	2 cut(s)	260, 642
PaeR7I	CTCGAG	1 cut(s)	354
PciI	ACATGT	1 cut(s)	256
PdmI	GAANNNNTTC	1 cut(s)	729
PfeI	GAWTC	2 cut(s)	320, 379
PflMI	CCANNNNNTGG	1 cut(s)	404
PkrI	GCNGC	7 cut(s)	157, 160, 301, 312, 502, 595, 644
Ppu21I	YACGTR	1 cut(s)	45
PscI	ACATGT	1 cut(s)	256
PshAI	GACNNNNGTC	1 cut(s)	804
Psp6I	CCWGG	2 cut(s)	403, 432
PspGI	CCWGG	2 cut(s)	403, 432
PspN4I	GGNNCC	1 cut(s)	139
PstI	CTGCAG	1 cut(s)	163
PstNI	CAGNNNCTG	1 cut(s)	404
PsuI	RGATCY	1 cut(s)	137
PvuII	CAGCTG	2 cut(s)	158, 503
RsaI	GTAC	2 cut(s)	526, 628
RsaNI	GTAC	2 cut(s)	525, 627
SaqAI	TTAA	3 cut(s)	92, 204, 423
SatI	GCNGC	7 cut(s)	156, 159, 300, 311, 501, 594, 643
Sau3AI	GATC	3 cut(s)	137, 615, 775
ScaI	AGTACT	1 cut(s)	628
ScrFI	CCNGG	2 cut(s)	405, 434
SfaNI	GCATC	2 cut(s)	430, 472
SfcI	CTRYAG	2 cut(s)	159, 270
Sfr274I	CTCGAG	1 cut(s)	354
SlaI	CTCGAG	1 cut(s)	354
SmlI	CTYRAG	1 cut(s)	354
SmoI	CTYRAG	1 cut(s)	354
Sse9I	AATT	1 cut(s)	720
SsiI	CCGC	4 cut(s)	5, 49, 54, 642
SspI	AATATT	1 cut(s)	364
SspMI	CTAG	1 cut(s)	624
StyD4I	CCNGG	2 cut(s)	403, 432
TaaI	ACNGT	3 cut(s)	76, 175, 271
TaiI	ACGT	1 cut(s)	47
TaqI	TCGA	1 cut(s)	355
TasI	AATT	1 cut(s)	720
TatI	WGTACW	2 cut(s)	524, 626
TauI	GCSGC	1 cut(s)	645
TfiI	GAWTC	2 cut(s)	320, 379
Tru1I	TTAA	3 cut(s)	92, 204, 423
Tru9I	TTAA	3 cut(s)	92, 204, 423
TscAI	CASTG	1 cut(s)	801
TseFI	GTSAC	1 cut(s)	198
TseI	GCWGC	6 cut(s)	155, 158, 299, 310, 500, 593
Tsp45I	GTSAC	1 cut(s)	198
TspDTI	ATGAA	2 cut(s)	231, 312
TspGWI	ACGGA	2 cut(s)	683, 729
TspRI	CASTG	1 cut(s)	801
Van91I	CCANNNNNTGG	1 cut(s)	404
XceI	RCATGY	2 cut(s)	260, 642
XhoI	CTCGAG	1 cut(s)	354
XmiI	GTMKAC	1 cut(s)	189
XmnI	GAANNNNTTC	1 cut(s)	729
XspI	CTAG	1 cut(s)	624
ZrmI	AGTACT	1 cut(s)	628
Zsp2I	ATGCAT	2 cut(s)	478, 495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.