Rmu_sc0003887.1_g000023

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003887.1
N/A
Physical Location & Seq
Forward (+)
85726 .. 86193
468 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 468 bp
atgtgggggaaggatcctgttgtgactgtagagaagacatccaaaagccgtcatctacttgacacttatcgactcctttcagttgaaccagacaacattattggagttttcccatcatggttctcgctccctccttctgcaacgaagcttgtgcaaattggtgtcgaattcaaatgcagacagagcgacgataaaatccttaccataaccttcgacaacggagtaatggagatttcatcgatagagtgggagcgtaatgatttctgtttattgagaaacctcgtcgcgatggaagagtgtgaatcgaggggtccccatcggtatcaaattatgttttattgtaggatcatgaatgaccttattaaattaaccaaagatatggagattctcatcgccaaacacattcttccgaagtacgtacgacatcagcaaggaggagatggctgcttgcttctgcgatatttgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

155

Amino Acids

18.05

Weight (kDa)

6.89

Isoelectric Point (pI)

51.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 11 - 142 3.2e-24 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 287
AclWI GGATC 3 cut(s) 8, 21, 353
AcsI RAATTY 1 cut(s) 167
AfaI GTAC 2 cut(s) 416, 420
AgsI TTSAA 2 cut(s) 86, 172
AluBI AGCT 1 cut(s) 148
AluI AGCT 1 cut(s) 148
AlwI GGATC 3 cut(s) 8, 21, 353
ApeKI GCWGC 1 cut(s) 444
ApoI RAATTY 1 cut(s) 167
AspS9I GGNCC 1 cut(s) 311
AvaII GGWCC 1 cut(s) 311
BamHI GGATCC 1 cut(s) 13
BbsI GAAGAC 1 cut(s) 41
BbvI GCAGC 1 cut(s) 431
BccI CCATC 4 cut(s) 121, 283, 324, 434
BceAI ACGGC 1 cut(s) 33
BcgI CGANNNNNNTGC 2 cut(s) 133, 167
BfmI CTRYAG 1 cut(s) 27
BisI GCNGC 1 cut(s) 445
BlsI GCNGC 1 cut(s) 446
Bme18I GGWCC 1 cut(s) 311
BmgT120I GGNCC 1 cut(s) 311
BmiI GGNNCC 3 cut(s) 15, 312, 313
BpiI GAAGAC 1 cut(s) 41
Bsa29I ATCGAT 1 cut(s) 239
BsaAI YACGTR 1 cut(s) 418
BsaBI GATNNNNATC 1 cut(s) 389
Bse8I GATNNNNATC 1 cut(s) 389
BseCI ATCGAT 1 cut(s) 239
BseGI GGATG 1 cut(s) 38
BseJI GATNNNNATC 1 cut(s) 389
BseRI GAGGAG 1 cut(s) 450
BseXI GCAGC 1 cut(s) 431
Bsh1236I CGCG 1 cut(s) 287
BshVI ATCGAT 1 cut(s) 239
BsiWI CGTACG 1 cut(s) 418
BslFI GGGAC 1 cut(s) 297
BsmFI GGGAC 1 cut(s) 297
Bsp143I GATC 2 cut(s) 13, 345
Bsp68I TCGCGA 1 cut(s) 287
BspDI ATCGAT 1 cut(s) 239
BspFNI CGCG 1 cut(s) 287
BspHI TCATGA 1 cut(s) 348
BspLI GGNNCC 3 cut(s) 15, 312, 313
BspPI GGATC 3 cut(s) 8, 21, 353
BssMI GATC 2 cut(s) 13, 345
Bst4CI ACNGT 1 cut(s) 28
Bst6I CTCTTC 1 cut(s) 288
BstBAI YACGTR 1 cut(s) 418
BstC8I GCNNGC 1 cut(s) 449
BstF5I GGATG 1 cut(s) 38
BstFNI CGCG 1 cut(s) 287
BstKTI GATC 2 cut(s) 16, 348
BstMBI GATC 2 cut(s) 13, 345
BstMWI GCNNNNNNNGC 1 cut(s) 183
BstSFI CTRYAG 1 cut(s) 27
BstSNI TACGTA 1 cut(s) 418
BstUI CGCG 1 cut(s) 287
BstV1I GCAGC 1 cut(s) 431
BstV2I GAAGAC 1 cut(s) 41
BstX2I RGATCY 1 cut(s) 13
BstXI CCANNNNNNTGG 1 cut(s) 379
BstYI RGATCY 1 cut(s) 13
Bsu15I ATCGAT 1 cut(s) 239
BsuTUI ATCGAT 1 cut(s) 239
BtgZI GCGATG 2 cut(s) 302, 376
BtsCI GGATG 1 cut(s) 38
BtuMI TCGCGA 1 cut(s) 287
Cac8I GCNNGC 1 cut(s) 449
CciI TCATGA 1 cut(s) 348
Cfr13I GGNCC 1 cut(s) 311
ClaI ATCGAT 1 cut(s) 239
Csp6I GTAC 2 cut(s) 415, 419
CviAII CATG 2 cut(s) 117, 349
CviJI RGCY 3 cut(s) 48, 148, 444
CviKI_1 RGCY 3 cut(s) 48, 148, 444
CviQI GTAC 2 cut(s) 415, 419
DpnI GATC 2 cut(s) 15, 347
DpnII GATC 2 cut(s) 13, 345
Eam1104I CTCTTC 1 cut(s) 288
EarI CTCTTC 1 cut(s) 288
Eco105I TACGTA 1 cut(s) 418
Eco47I GGWCC 1 cut(s) 311
EcoO109I RGGNCCY 1 cut(s) 311
EcoRI GAATTC 1 cut(s) 167
FaeI CATG 2 cut(s) 120, 352
FaiI YATR 5 cut(s) 118, 206, 332, 350, 380
FaqI GGGAC 1 cut(s) 297
FatI CATG 2 cut(s) 116, 348
Fnu4HI GCNGC 1 cut(s) 445
FokI GGATG 1 cut(s) 25
Fsp4HI GCNGC 1 cut(s) 445
GluI GCNGC 1 cut(s) 445
Hin1II CATG 2 cut(s) 120, 352
HindIII AAGCTT 1 cut(s) 146
HinfI GANTC 3 cut(s) 72, 302, 385
Hpy188I TCNGA 1 cut(s) 411
Hpy188III TCNNGA 2 cut(s) 286, 349
Hpy99I CGWCG 2 cut(s) 191, 287
HpyAV CCTTC 3 cut(s) 4, 144, 220
HpyCH4III ACNGT 1 cut(s) 28
HpyCH4IV ACGT 1 cut(s) 417
HpyCH4V TGCA 3 cut(s) 140, 154, 177
HpyF10VI GCNNNNNNNGC 1 cut(s) 183
HpySE526I ACGT 1 cut(s) 417
Hsp92II CATG 2 cut(s) 120, 352
KflI GGGWCCC 1 cut(s) 311
Kzo9I GATC 2 cut(s) 13, 345
LmnI GCTCC 2 cut(s) 132, 250
LpnPI CCDG 2 cut(s) 30, 102
Lsp1109I GCAGC 1 cut(s) 431
MaeII ACGT 1 cut(s) 417
MaeIII GTNAC 1 cut(s) 22
MalI GATC 2 cut(s) 15, 347
MboI GATC 2 cut(s) 13, 345
MboII GAAGA 3 cut(s) 46, 305, 398
MflI RGATCY 1 cut(s) 13
MluCI AATT 4 cut(s) 156, 167, 327, 365
MlyI GAGTC 1 cut(s) 66
MnlI CCTC 4 cut(s) 141, 290, 300, 428
MseI TTAA 2 cut(s) 363, 368
MvnI CGCG 1 cut(s) 287
MwoI GCNNNNNNNGC 1 cut(s) 183
NdeII GATC 2 cut(s) 13, 345
NlaIII CATG 2 cut(s) 120, 352
NlaIV GGNNCC 3 cut(s) 15, 312, 313
NmuCI GTSAC 1 cut(s) 22
NruI TCGCGA 1 cut(s) 287
PagI TCATGA 1 cut(s) 348
PfeI GAWTC 2 cut(s) 302, 385
Pfl23II CGTACG 1 cut(s) 418
PkrI GCNGC 1 cut(s) 446
PleI GAGTC 1 cut(s) 66
PpsI GAGTC 1 cut(s) 66
Ppu21I YACGTR 1 cut(s) 418
PpuMI RGGWCCY 1 cut(s) 311
Psp5II RGGWCCY 1 cut(s) 311
PspLI CGTACG 1 cut(s) 418
PspN4I GGNNCC 3 cut(s) 15, 312, 313
PspPI GGNCC 1 cut(s) 311
PspPPI RGGWCCY 1 cut(s) 311
PsuI RGATCY 1 cut(s) 13
RruI TCGCGA 1 cut(s) 287
RsaI GTAC 2 cut(s) 416, 420
RsaNI GTAC 2 cut(s) 415, 419
SaqAI TTAA 2 cut(s) 363, 368
SatI GCNGC 1 cut(s) 445
Sau3AI GATC 2 cut(s) 13, 345
Sau96I GGNCC 1 cut(s) 311
SchI GAGTC 1 cut(s) 66
SetI ASST 5 cut(s) 150, 212, 282, 360, 420
SfcI CTRYAG 1 cut(s) 27
SinI GGWCC 1 cut(s) 311
SnaBI TACGTA 1 cut(s) 418
Sse9I AATT 4 cut(s) 156, 167, 327, 365
TaaI ACNGT 1 cut(s) 28
TaiI ACGT 1 cut(s) 420
TaqI TCGA 5 cut(s) 70, 165, 213, 239, 305
TasI AATT 4 cut(s) 156, 167, 327, 365
TfiI GAWTC 2 cut(s) 302, 385
Tru1I TTAA 2 cut(s) 363, 368
Tru9I TTAA 2 cut(s) 363, 368
TseFI GTSAC 1 cut(s) 22
TseI GCWGC 1 cut(s) 444
Tsp45I GTSAC 1 cut(s) 22
TspDTI ATGAA 2 cut(s) 225, 365
TspGWI ACGGA 1 cut(s) 234
VpaK11BI GGWCC 1 cut(s) 311
XapI RAATTY 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.