Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003892.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

6206 .. 8127

Gene Structure 1922 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

atgcacacgctcttcactcttatggtgtatggagcccttggtatctttagcaagtacaatgaaatcagatcggtaatggctatgaagattcttgcatgctttcttgtggttatcttgatttgggagattcctggggttttttacatagtttggcgtccattagctttcttattggggtatactgatcctgcaaaaccagatctccctcggctgcatgaatggcattttagatctggactggatcgctacatatggatcattggaatgatatatgcgtattatcatcctactgttgaaaaatggatggagaaattggaggaatctgataccaaaaggagagtctcaattaaagcaggaatagtttccgtcgctttatttgttggttatctgtggtatgaatgtatttacaagctggacaaggtttcatacaacaagttgcatccctacacatcatggattcccataacagtttatatatgcttacgaaactttactcagcagctgcggaactcctctttgactctctttgcgtggcttggcaagattactctggagacctatatttcacagttccacatctggttgagatcaaacacccccaacggacaacctaagtggcttctctcggtcattccaaactatcccatgctcaatttcatgttgacaactgccatatatgttttggtatctcataggcttttcgagttaacgaatacgcttaagacagtctttgtacccacaaaagacaaccaaaggctgcttcataattttcttgctggggcagctatttttacttctttgtacttcatttcattcattattgttcagatacctcattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009832 GO:0009834 GO:0009987 GO:0010383 GO:0010410 GO:0012505 GO:0016051 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0070589 GO:0070592 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901576 GO:1990937

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cas1_AcylT

Protein Analysis

279

Amino Acids

32.82

Weight (kDa)

9.43

Isoelectric Point (pI)

31.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cas1_AcylT	PF07779	25 - 252	3.8e-47	10 TM Acyl Transferase domain found in Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	179
AciI	CCGC	1 cut(s)	505
AclWI	GGATC	3 cut(s)	179, 249, 263
AcyI	GRCGYC	1 cut(s)	154
AfaI	GTAC	3 cut(s)	56, 735, 803
AflII	CTTAAG	1 cut(s)	719
AgsI	TTSAA	1 cut(s)	296
AjnI	CCWGG	1 cut(s)	130
AjuI	GAANNNNNNNTTGG	2 cut(s)	744, 776
AluBI	AGCT	4 cut(s)	164, 412, 502, 785
AluI	AGCT	4 cut(s)	164, 412, 502, 785
Alw26I	GTCTC	2 cut(s)	346, 548
AlwI	GGATC	3 cut(s)	179, 249, 263
AlwNI	CAGNNNCTG	1 cut(s)	502
ApeKI	GCWGC	5 cut(s)	211, 499, 502, 757, 782
ArsI	GACNNNNNNTTYG	2 cut(s)	324, 356
Asp700I	GAANNNNTTC	1 cut(s)	361
BanII	GRGCYC	1 cut(s)	37
BbvI	GCAGC	5 cut(s)	198, 489, 511, 744, 794
BccI	CCATC	1 cut(s)	298
BciT130I	CCWGG	1 cut(s)	132
BcoDI	GTCTC	2 cut(s)	346, 548
BfrI	CTTAAG	1 cut(s)	719
BglII	AGATCT	2 cut(s)	199, 230
BisI	GCNGC	5 cut(s)	212, 500, 503, 758, 783
BlsI	GCNGC	5 cut(s)	213, 501, 504, 759, 784
Bme1390I	CCNGG	1 cut(s)	132
BmiI	GGNNCC	1 cut(s)	34
BmrFI	CCNGG	1 cut(s)	132
BmsI	GCATC	1 cut(s)	448
BpmI	CTGGAG	1 cut(s)	572
BsaHI	GRCGYC	1 cut(s)	154
BsaI	GGTCTC	1 cut(s)	548
BsaJI	CCNNGG	3 cut(s)	37, 131, 206
BsaXI	ACNNNNNCTCC	2 cut(s)	186, 216
Bse1I	ACTGG	1 cut(s)	243
BseBI	CCWGG	1 cut(s)	132
BseDI	CCNNGG	3 cut(s)	37, 131, 206
BseGI	GGATG	3 cut(s)	283, 309, 439
BseMII	CTCAG	1 cut(s)	509
BseNI	ACTGG	1 cut(s)	243
BseRI	GAGGAG	1 cut(s)	502
BseXI	GCAGC	5 cut(s)	198, 489, 511, 744, 794
BseYI	CCCAGC	1 cut(s)	776
BsmAI	GTCTC	2 cut(s)	346, 548
Bso31I	GGTCTC	1 cut(s)	548
Bsp1286I	GDGCHC	1 cut(s)	37
Bsp143I	GATC	7 cut(s)	68, 184, 199, 230, 241, 255, 587
BspACI	CCGC	1 cut(s)	505
BspCNI	CTCAG	1 cut(s)	508
BspLI	GGNNCC	1 cut(s)	34
BspPI	GGATC	3 cut(s)	179, 249, 263
BspQI	GCTCTTC	1 cut(s)	17
BspTI	CTTAAG	1 cut(s)	719
BspTNI	GGTCTC	1 cut(s)	548
BsrI	ACTGG	1 cut(s)	243
BssECI	CCNNGG	3 cut(s)	37, 131, 206
BssMI	GATC	7 cut(s)	68, 184, 199, 230, 241, 255, 587
BssNAI	GTATAC	1 cut(s)	180
BssNI	GRCGYC	1 cut(s)	154
BssT1I	CCWWGG	1 cut(s)	37
Bst1107I	GTATAC	1 cut(s)	180
Bst2UI	CCWGG	1 cut(s)	132
Bst4CI	ACNGT	4 cut(s)	292, 469, 570, 727
Bst6I	CTCTTC	1 cut(s)	17
BstACI	GRCGYC	1 cut(s)	154
BstAFI	CTTAAG	1 cut(s)	719
BstC8I	GCNNGC	1 cut(s)	97
BstDEI	CTNAG	2 cut(s)	495, 612
BstF5I	GGATG	3 cut(s)	283, 309, 439
BstKTI	GATC	7 cut(s)	71, 187, 202, 233, 244, 258, 590
BstMAI	GTCTC	2 cut(s)	346, 548
BstMBI	GATC	7 cut(s)	68, 184, 199, 230, 241, 255, 587
BstMWI	GCNNNNNNNGC	2 cut(s)	220, 782
BstNI	CCWGG	1 cut(s)	132
BstNSI	RCATGY	1 cut(s)	99
BstSCI	CCNGG	1 cut(s)	130
BstV1I	GCAGC	5 cut(s)	198, 489, 511, 744, 794
BstX2I	RGATCY	2 cut(s)	199, 230
BstYI	RGATCY	2 cut(s)	199, 230
BstZ17I	GTATAC	1 cut(s)	180
BtsCI	GGATG	3 cut(s)	283, 309, 439
Cac8I	GCNNGC	1 cut(s)	97
CaiI	CAGNNNCTG	1 cut(s)	502
CseI	GACGC	1 cut(s)	143
Csp6I	GTAC	3 cut(s)	55, 734, 802
CspCI	CAANNNNNGTGG	2 cut(s)	596, 631
CviAII	CATG	5 cut(s)	96, 215, 453, 646, 658
CviQI	GTAC	3 cut(s)	55, 734, 802
DdeI	CTNAG	2 cut(s)	495, 612
DpnI	GATC	7 cut(s)	70, 186, 201, 232, 243, 257, 589
DpnII	GATC	7 cut(s)	68, 184, 199, 230, 241, 255, 587
Eam1104I	CTCTTC	1 cut(s)	17
EarI	CTCTTC	1 cut(s)	17
Eco130I	CCWWGG	1 cut(s)	37
Eco24I	GRGCYC	1 cut(s)	37
Eco31I	GGTCTC	1 cut(s)	548
EcoRII	CCWGG	1 cut(s)	130
EcoT14I	CCWWGG	1 cut(s)	37
EcoT38I	GRGCYC	1 cut(s)	37
ErhI	CCWWGG	1 cut(s)	37
FaeI	CATG	5 cut(s)	99, 218, 456, 649, 661
FalI	AAGNNNNNCTT	2 cut(s)	713, 745
FatI	CATG	5 cut(s)	95, 214, 452, 645, 657
FauNDI	CATATG	1 cut(s)	251
FblI	GTMKAC	1 cut(s)	179
Fnu4HI	GCNGC	5 cut(s)	212, 500, 503, 758, 783
FokI	GGATG	3 cut(s)	270, 316, 426
FriOI	GRGCYC	1 cut(s)	37
Fsp4HI	GCNGC	5 cut(s)	212, 500, 503, 758, 783
GluI	GCNGC	5 cut(s)	212, 500, 503, 758, 783
GsaI	CCCAGC	1 cut(s)	780
GsuI	CTGGAG	1 cut(s)	572
HgaI	GACGC	1 cut(s)	143
Hin1I	GRCGYC	1 cut(s)	154
Hin1II	CATG	5 cut(s)	99, 218, 456, 649, 661
HincII	GTYRAC	2 cut(s)	663, 708
HindII	GTYRAC	2 cut(s)	663, 708
HinfI	GANTC	6 cut(s)	88, 127, 320, 339, 457, 520
HpaI	GTTAAC	1 cut(s)	708
Hpy166II	GTNNAC	3 cut(s)	180, 663, 708
Hpy188I	TCNGA	3 cut(s)	68, 325, 828
Hpy188III	TCNNGA	3 cut(s)	115, 234, 551
Hpy8I	GTNNAC	3 cut(s)	180, 663, 708
Hpy99I	CGWCG	1 cut(s)	371
HpyCH4III	ACNGT	4 cut(s)	292, 469, 570, 727
HpyCH4V	TGCA	5 cut(s)	4, 95, 191, 214, 439
HpyF10VI	GCNNNNNNNGC	2 cut(s)	220, 782
HpyF3I	CTNAG	2 cut(s)	495, 612
Hsp92I	GRCGYC	1 cut(s)	154
Hsp92II	CATG	5 cut(s)	99, 218, 456, 649, 661
KspAI	GTTAAC	1 cut(s)	708
Kzo9I	GATC	7 cut(s)	68, 184, 199, 230, 241, 255, 587
LguI	GCTCTTC	1 cut(s)	17
LmnI	GCTCC	1 cut(s)	32
Lsp1109I	GCAGC	5 cut(s)	198, 489, 511, 744, 794
LweI	GCATC	1 cut(s)	448
MalI	GATC	7 cut(s)	70, 186, 201, 232, 243, 257, 589
MboI	GATC	7 cut(s)	68, 184, 199, 230, 241, 255, 587
MboII	GAAGA	2 cut(s)	4, 97
MflI	RGATCY	2 cut(s)	199, 230
MhlI	GDGCHC	1 cut(s)	37
MluCI	AATT	4 cut(s)	311, 345, 652, 766
MlyI	GAGTC	2 cut(s)	348, 514
MnlI	CCTC	3 cut(s)	216, 310, 523
MroXI	GAANNNNTTC	1 cut(s)	361
MseI	TTAA	3 cut(s)	348, 707, 720
MslI	CAYNNNNRTG	2 cut(s)	20, 263
MspA1I	CMGCKG	1 cut(s)	502
MspCI	CTTAAG	1 cut(s)	719
MspR9I	CCNGG	1 cut(s)	132
MvaI	CCWGG	1 cut(s)	132
MwoI	GCNNNNNNNGC	2 cut(s)	220, 782
NdeI	CATATG	1 cut(s)	251
NdeII	GATC	7 cut(s)	68, 184, 199, 230, 241, 255, 587
NlaIII	CATG	5 cut(s)	99, 218, 456, 649, 661
NlaIV	GGNNCC	1 cut(s)	34
NmeAIII	GCCGAG	1 cut(s)	187
NspI	RCATGY	1 cut(s)	99
PaeI	GCATGC	1 cut(s)	99
PciSI	GCTCTTC	1 cut(s)	17
PdmI	GAANNNNTTC	1 cut(s)	361
PfeI	GAWTC	4 cut(s)	88, 127, 320, 457
PkrI	GCNGC	5 cut(s)	213, 501, 504, 759, 784
PleI	GAGTC	2 cut(s)	347, 514
PpsI	GAGTC	2 cut(s)	347, 514
Psp6I	CCWGG	1 cut(s)	130
PspFI	CCCAGC	1 cut(s)	776
PspGI	CCWGG	1 cut(s)	130
PspN4I	GGNNCC	1 cut(s)	34
PstNI	CAGNNNCTG	1 cut(s)	502
PsuI	RGATCY	2 cut(s)	199, 230
PvuII	CAGCTG	1 cut(s)	502
RsaI	GTAC	3 cut(s)	56, 735, 803
RsaNI	GTAC	3 cut(s)	55, 734, 802
RseI	CAYNNNNRTG	2 cut(s)	20, 263
SapI	GCTCTTC	1 cut(s)	17
SaqAI	TTAA	3 cut(s)	348, 707, 720
SatI	GCNGC	5 cut(s)	212, 500, 503, 758, 783
Sau3AI	GATC	7 cut(s)	68, 184, 199, 230, 241, 255, 587
SchI	GAGTC	2 cut(s)	348, 514
ScrFI	CCNGG	1 cut(s)	132
SduI	GDGCHC	1 cut(s)	37
SetI	ASST	8 cut(s)	166, 414, 423, 504, 560, 613, 787, 835
SfaNI	GCATC	1 cut(s)	448
SmiMI	CAYNNNNRTG	2 cut(s)	20, 263
SmlI	CTYRAG	1 cut(s)	719
SmoI	CTYRAG	1 cut(s)	719
SphI	GCATGC	1 cut(s)	99
Sse9I	AATT	4 cut(s)	311, 345, 652, 766
SsiI	CCGC	1 cut(s)	505
StyD4I	CCNGG	1 cut(s)	130
StyI	CCWWGG	1 cut(s)	37
TaaI	ACNGT	4 cut(s)	292, 469, 570, 727
TaqI	TCGA	1 cut(s)	702
TaqII	GACCGA	1 cut(s)	616
TasI	AATT	4 cut(s)	311, 345, 652, 766
TatI	WGTACW	2 cut(s)	54, 801
TfiI	GAWTC	4 cut(s)	88, 127, 320, 457
Tru1I	TTAA	3 cut(s)	348, 707, 720
Tru9I	TTAA	3 cut(s)	348, 707, 720
TseI	GCWGC	5 cut(s)	211, 499, 502, 757, 782
TspGWI	ACGGA	2 cut(s)	355, 618
Vha464I	CTTAAG	1 cut(s)	719
XceI	RCATGY	1 cut(s)	99
XcmI	CCANNNNNNNNNTGG	1 cut(s)	679
XmiI	GTMKAC	1 cut(s)	179
XmnI	GAANNNNTTC	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.