Rmu_sc0003898.1_g000011

histone deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003898.1
N/A
Physical Location & Seq
Reverse (-)
51842 .. 54414
2573 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1425 bp
atgaacagtaagtcgtcgtcgctaagtttcccaaagccagtcgactcaggcagaccttccacaatggcaagcaaagctgatcactctttctcttcccctattgtcaactttcaaacatggtgcgatcacctggcttggctgtcctctgatatcactgacattccctaccctaatactccctgcaggagagtaagtaattgtttggcaattcaaatctgtgttaaagatgtcaagctctctctctctctctctctctctctctctctttgggtttggccacggtccggcattggatctcccaccggcggcttcgacggcttgtgggtggtcaacagctgggcacggtggctctactcaacatggttgcaggtcatcactagtggagatcgggctgctggtctgggtgcccctgaggattctttcggggatctgggcctgggcctggtttctgggttaagttctgggtgccctgaggaattcttcaggcgcttggaattgggcctgtgctgtgttggtaagacccactcatttctgggctcgtgtttgggattaggaggctattgtagaaaacttgggctccagttcgtttttgaattggggaccaagatggcaagatatcataaagtgattccacaactgaaggctgcactgttattgtcaaatgcctccaaggatcgttcgtcatcaaccaagctagagaacctcgatggtctaattgctgatgtagataatctcatctctacattttctggctttgatcttcatcaactggatactcacttctgtgatgaacttgcaatggccaaggagggactccaaaagatatttgactgtgacttggaagctttagctgatcccaaagtccaagaggagttccttactcattcagccacacttatttctgatgattcttgcccaatagacttgaaggttaaacttttatctttccaatctaatctctcagaggaaatgtctgctttcgtggaagctcaacatgagttgaataaagtgtcagacctatcagcttcacttgctgggcaaaagtttgtgcttgaatcgaccacttcaaagtatgccgaagtgaaagcactatttcttgcagcagacaagaaacatgccaaacttactgccaagatcagtgctgcgtcgaaggctggaattgaattgtttgaagatttagccattgttcggatgcgaagggctgagtttgaagagaaattgggtaccattgagggagtaattaccactgctagagatagatttgtctcagactcttcgaagctttctgcaataaagggattgaccaatgcagctgcccttttagtcactcgacgaaagtcagcctggaatagcttaaggattacttactcaaattttgcatcacttggtctgcatgatgaggaaacttatttggtgggtttctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-UBP

Protein Analysis

474

Amino Acids

51.72

Weight (kDa)

6.1

Isoelectric Point (pI)

38.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 358
Acc65I GGTACC 1 cut(s) 1223
AccB1I GGYRCC 3 cut(s) 404, 465, 1223
AccI GTMKAC 1 cut(s) 42
AciI CCGC 1 cut(s) 306
AclWI GGATC 4 cut(s) 301, 435, 681, 848
AcoI YGGCCR 2 cut(s) 275, 801
AcsI RAATTY 2 cut(s) 476, 1372
AcuI CTGAAG 2 cut(s) 466, 659
AfaI GTAC 1 cut(s) 1225
AfiI CCNNNNNNNGG 4 cut(s) 284, 305, 442, 1188
AflII CTTAAG 1 cut(s) 1354
AhlI ACTAGT 1 cut(s) 377
AjnI CCWGG 4 cut(s) 129, 435, 441, 1343
AleI CACNNNNGTG 1 cut(s) 783
Alw26I GTCTC 1 cut(s) 1270
AlwI GGATC 4 cut(s) 301, 435, 681, 848
AoxI GGCC 5 cut(s) 275, 433, 439, 499, 801
ApeKI GCWGC 6 cut(s) 392, 644, 1100, 1142, 1310, 1313
ApoI RAATTY 2 cut(s) 476, 1372
Asp718I GGTACC 1 cut(s) 1223
AspLEI GCGC 1 cut(s) 489
AspS9I GGNCC 5 cut(s) 282, 433, 439, 499, 600
AsuHPI GGTGA 1 cut(s) 119
AsuII TTCGAA 1 cut(s) 1277
AvaII GGWCC 2 cut(s) 282, 600
AxyI CCTNAGG 2 cut(s) 411, 471
BaeGI GKGCMC 3 cut(s) 343, 409, 470
BalI TGGCCA 2 cut(s) 277, 803
BanI GGYRCC 3 cut(s) 404, 465, 1223
BanII GRGCYC 2 cut(s) 539, 579
BauI CACGAG 1 cut(s) 538
BbvI GCAGC 6 cut(s) 379, 631, 1112, 1129, 1300, 1322
BccI CCATC 2 cut(s) 601, 701
BceAI ACGGC 1 cut(s) 331
BciT130I CCWGG 4 cut(s) 131, 437, 443, 1345
BciVI GTATCC 1 cut(s) 766
BclI TGATCA 1 cut(s) 79
BcoDI GTCTC 1 cut(s) 1270
BcuI ACTAGT 1 cut(s) 377
BfaI CTAG 4 cut(s) 378, 695, 1251, 1423
BfmI CTRYAG 1 cut(s) 181
BfoI RGCGCY 1 cut(s) 490
BfrI CTTAAG 1 cut(s) 1354
BfuAI ACCTGC 1 cut(s) 358
BfuI GTATCC 1 cut(s) 766
BisI GCNGC 7 cut(s) 307, 393, 645, 1101, 1143, 1311, 1314
BlsI GCNGC 7 cut(s) 308, 394, 646, 1102, 1144, 1312, 1315
Bme1390I CCNGG 4 cut(s) 131, 437, 443, 1345
Bme18I GGWCC 2 cut(s) 282, 600
BmgT120I GGNCC 5 cut(s) 282, 433, 439, 499, 600
BmiI GGNNCC 5 cut(s) 406, 467, 578, 601, 1225
BmrFI CCNGG 4 cut(s) 131, 437, 443, 1345
BmsI GCATC 2 cut(s) 1182, 1388
BoxI GACNNNNGTC 1 cut(s) 1336
BpmI CTGGAG 1 cut(s) 563
Bpu14I TTCGAA 1 cut(s) 1277
BsaBI GATNNNNATC 1 cut(s) 762
BsaJI CCNNGG 4 cut(s) 278, 436, 669, 804
BsaXI ACNNNNNCTCC 4 cut(s) 178, 208, 561, 591
Bsc4I CCNNNNNNNGG 4 cut(s) 284, 305, 442, 1188
Bse118I RCCGGY 1 cut(s) 302
Bse1I ACTGG 3 cut(s) 38, 580, 774
Bse21I CCTNAGG 2 cut(s) 411, 471
Bse3DI GCAATG 1 cut(s) 804
Bse8I GATNNNNATC 1 cut(s) 762
BseBI CCWGG 4 cut(s) 131, 437, 443, 1345
BseDI CCNNGG 4 cut(s) 278, 436, 669, 804
BseGI GGATG 1 cut(s) 1197
BseJI GATNNNNATC 1 cut(s) 762
BseLI CCNNNNNNNGG 4 cut(s) 284, 305, 442, 1188
BseMI GCAATG 1 cut(s) 804
BseMII CTCAG 6 cut(s) 60, 402, 462, 975, 1194, 1281
BseNI ACTGG 3 cut(s) 38, 580, 774
BseRI GAGGAG 1 cut(s) 884
BseSI GKGCMC 3 cut(s) 343, 409, 470
BseXI GCAGC 6 cut(s) 379, 631, 1112, 1129, 1300, 1322
BseYI CCCAGC 2 cut(s) 336, 1034
BsgI GTGCAG 1 cut(s) 630
BshFI GGCC 5 cut(s) 277, 435, 441, 501, 803
BshNI GGYRCC 3 cut(s) 404, 465, 1223
BsiSI CCGG 2 cut(s) 285, 303
BslFI GGGAC 2 cut(s) 613, 825
BslI CCNNNNNNNGG 4 cut(s) 284, 305, 442, 1188
BsmAI GTCTC 1 cut(s) 1270
BsmFI GGGAC 2 cut(s) 613, 825
BsnI GGCC 5 cut(s) 277, 435, 441, 501, 803
Bsp119I TTCGAA 1 cut(s) 1277
Bsp1286I GDGCHC 5 cut(s) 343, 409, 470, 539, 579
Bsp143I GATC 9 cut(s) 79, 124, 293, 385, 427, 673, 757, 853, 1134
BspACI CCGC 1 cut(s) 306
BspANI GGCC 5 cut(s) 277, 435, 441, 501, 803
BspCNI CTCAG 6 cut(s) 59, 403, 463, 974, 1195, 1280
BspLI GGNNCC 5 cut(s) 406, 467, 578, 601, 1225
BspMAI CTGCAG 1 cut(s) 185
BspMI ACCTGC 1 cut(s) 358
BspPI GGATC 4 cut(s) 301, 435, 681, 848
BspT104I TTCGAA 1 cut(s) 1277
BspT107I GGYRCC 3 cut(s) 404, 465, 1223
BspTI CTTAAG 1 cut(s) 1354
BsrDI GCAATG 1 cut(s) 804
BsrFI RCCGGY 1 cut(s) 302
BsrI ACTGG 3 cut(s) 38, 580, 774
BssAI RCCGGY 1 cut(s) 302
BssECI CCNNGG 4 cut(s) 278, 436, 669, 804
BssMI GATC 9 cut(s) 79, 124, 293, 385, 427, 673, 757, 853, 1134
BssSI CACGAG 1 cut(s) 538
BssT1I CCWWGG 2 cut(s) 669, 804
Bst2BI CACGAG 1 cut(s) 538
Bst2UI CCWGG 4 cut(s) 131, 437, 443, 1345
Bst4CI ACNGT 5 cut(s) 8, 282, 345, 651, 833
Bst6I CTCTTC 3 cut(s) 97, 1206, 1279
BstAFI CTTAAG 1 cut(s) 1354
BstBI TTCGAA 1 cut(s) 1277
BstC8I GCNNGC 1 cut(s) 70
BstDEI CTNAG 7 cut(s) 23, 46, 411, 471, 961, 1203, 1267
BstDSI CCRYGG 1 cut(s) 278
BstF5I GGATG 1 cut(s) 1197
BstH2I RGCGCY 1 cut(s) 490
BstHHI GCGC 1 cut(s) 489
BstKTI GATC 9 cut(s) 82, 127, 296, 388, 430, 676, 760, 856, 1137
BstMAI GTCTC 1 cut(s) 1270
BstMBI GATC 9 cut(s) 79, 124, 293, 385, 427, 673, 757, 853, 1134
BstMWI GCNNNNNNNGC 4 cut(s) 74, 315, 1031, 1151
BstNI CCWGG 4 cut(s) 131, 437, 443, 1345
BstNSI RCATGY 1 cut(s) 1118
BstPAI GACNNNNGTC 1 cut(s) 1336
BstSCI CCNGG 4 cut(s) 129, 435, 441, 1343
BstSFI CTRYAG 1 cut(s) 181
BstSLI GKGCMC 3 cut(s) 343, 409, 470
BstV1I GCAGC 6 cut(s) 379, 631, 1112, 1129, 1300, 1322
BstX2I RGATCY 2 cut(s) 293, 427
BstYI RGATCY 2 cut(s) 293, 427
Bsu36I CCTNAGG 2 cut(s) 411, 471
BsuI GTATCC 1 cut(s) 766
BsuRI GGCC 5 cut(s) 277, 435, 441, 501, 803
BtgI CCRYGG 1 cut(s) 278
BtsCI GGATG 1 cut(s) 1197
BtsI GCAGTG 1 cut(s) 1245
BtsIMutI CAGTG 4 cut(s) 153, 647, 1144, 1245
BveI ACCTGC 1 cut(s) 358
Cac8I GCNNGC 1 cut(s) 70
CfoI GCGC 1 cut(s) 489
Cfr10I RCCGGY 1 cut(s) 302
Cfr13I GGNCC 5 cut(s) 282, 433, 439, 499, 600
CpoI CGGWCCG 1 cut(s) 282
CseI GACGC 1 cut(s) 1134
Csp6I GTAC 1 cut(s) 1224
CspI CGGWCCG 1 cut(s) 282
CviAII CATG 5 cut(s) 117, 360, 995, 1115, 1394
CviQI GTAC 1 cut(s) 1224
DdeI CTNAG 7 cut(s) 23, 46, 411, 471, 961, 1203, 1267
DpnI GATC 9 cut(s) 81, 126, 295, 387, 429, 675, 759, 855, 1136
DpnII GATC 9 cut(s) 79, 124, 293, 385, 427, 673, 757, 853, 1134
EaeI YGGCCR 2 cut(s) 275, 801
Eam1104I CTCTTC 3 cut(s) 97, 1206, 1279
EarI CTCTTC 3 cut(s) 97, 1206, 1279
Eco130I CCWWGG 2 cut(s) 669, 804
Eco24I GRGCYC 2 cut(s) 539, 579
Eco32I GATATC 2 cut(s) 151, 617
Eco47I GGWCC 2 cut(s) 282, 600
Eco57I CTGAAG 2 cut(s) 466, 659
Eco81I CCTNAGG 2 cut(s) 411, 471
EcoRI GAATTC 1 cut(s) 476
EcoRII CCWGG 4 cut(s) 129, 435, 441, 1343
EcoRV GATATC 2 cut(s) 151, 617
EcoT14I CCWWGG 2 cut(s) 669, 804
EcoT38I GRGCYC 2 cut(s) 539, 579
ErhI CCWWGG 2 cut(s) 669, 804
FaeI CATG 5 cut(s) 120, 363, 998, 1118, 1397
FaiI YATR 7 cut(s) 118, 361, 621, 996, 1074, 1116, 1395
FalI AAGNNNNNCTT 2 cut(s) 1348, 1380
FaqI GGGAC 2 cut(s) 613, 825
FatI CATG 5 cut(s) 116, 359, 994, 1114, 1393
FbaI TGATCA 1 cut(s) 79
FblI GTMKAC 1 cut(s) 42
Fnu4HI GCNGC 7 cut(s) 307, 393, 645, 1101, 1143, 1311, 1314
FokI GGATG 1 cut(s) 1204
FriOI GRGCYC 2 cut(s) 539, 579
Fsp4HI GCNGC 7 cut(s) 307, 393, 645, 1101, 1143, 1311, 1314
FspBI CTAG 4 cut(s) 378, 695, 1251, 1423
GlaI GCGC 1 cut(s) 488
GluI GCNGC 7 cut(s) 307, 393, 645, 1101, 1143, 1311, 1314
GsaI CCCAGC 2 cut(s) 340, 1038
GsuI CTGGAG 1 cut(s) 563
HaeII RGCGCY 1 cut(s) 490
HaeIII GGCC 5 cut(s) 277, 435, 441, 501, 803
HapII CCGG 2 cut(s) 285, 303
HgaI GACGC 1 cut(s) 1134
HhaI GCGC 1 cut(s) 489
Hin1II CATG 5 cut(s) 120, 363, 998, 1118, 1397
Hin6I GCGC 1 cut(s) 487
HinP1I GCGC 1 cut(s) 487
HincII GTYRAC 3 cut(s) 43, 106, 331
HindII GTYRAC 3 cut(s) 43, 106, 331
HindIII AAGCTT 2 cut(s) 843, 1280
HinfI GANTC 7 cut(s) 44, 416, 628, 813, 908, 1055, 1271
HpaII CCGG 2 cut(s) 285, 303
HphI GGTGA 1 cut(s) 119
Hpy166II GTNNAC 3 cut(s) 43, 106, 331
Hpy188I TCNGA 6 cut(s) 148, 904, 964, 1015, 1191, 1270
Hpy8I GTNNAC 3 cut(s) 43, 106, 331
Hpy99I CGWCG 5 cut(s) 19, 22, 317, 1150, 1335
HpyAV CCTTC 5 cut(s) 66, 634, 922, 1144, 1191
HpyCH4III ACNGT 5 cut(s) 8, 282, 345, 651, 833
HpyCH4V TGCA 9 cut(s) 183, 367, 647, 797, 1100, 1289, 1310, 1379, 1393
HpyF10VI GCNNNNNNNGC 4 cut(s) 74, 315, 1031, 1151
HpyF3I CTNAG 7 cut(s) 23, 46, 411, 471, 961, 1203, 1267
Hsp92II CATG 5 cut(s) 120, 363, 998, 1118, 1397
HspAI GCGC 1 cut(s) 487
KpnI GGTACC 1 cut(s) 1227
Ksp22I TGATCA 1 cut(s) 79
Kzo9I GATC 9 cut(s) 79, 124, 293, 385, 427, 673, 757, 853, 1134
LmnI GCTCC 1 cut(s) 582
Lsp1109I GCAGC 6 cut(s) 379, 631, 1112, 1129, 1300, 1322
LweI GCATC 2 cut(s) 1182, 1388
MaeI CTAG 4 cut(s) 378, 695, 1251, 1423
MaeIII GTNAC 2 cut(s) 833, 1324
MalI GATC 9 cut(s) 81, 126, 295, 387, 429, 675, 759, 855, 1136
MboI GATC 9 cut(s) 79, 124, 293, 385, 427, 673, 757, 853, 1134
MboII GAAGA 6 cut(s) 84, 472, 752, 1184, 1223, 1266
MflI RGATCY 2 cut(s) 293, 427
MhlI GDGCHC 5 cut(s) 343, 409, 470, 539, 579
MlsI TGGCCA 2 cut(s) 277, 803
MluNI TGGCCA 2 cut(s) 277, 803
MlyI GAGTC 3 cut(s) 38, 807, 1265
Mox20I TGGCCA 2 cut(s) 277, 803
MscI TGGCCA 2 cut(s) 277, 803
MseI TTAA 4 cut(s) 222, 455, 933, 1355
MslI CAYNNNNRTG 1 cut(s) 783
Msp20I TGGCCA 2 cut(s) 277, 803
MspA1I CMGCKG 2 cut(s) 336, 1313
MspCI CTTAAG 1 cut(s) 1354
MspI CCGG 2 cut(s) 285, 303
MspR9I CCNGG 4 cut(s) 131, 437, 443, 1345
MvaI CCWGG 4 cut(s) 131, 437, 443, 1345
MwoI GCNNNNNNNGC 4 cut(s) 74, 315, 1031, 1151
NdeII GATC 9 cut(s) 79, 124, 293, 385, 427, 673, 757, 853, 1134
NlaIII CATG 5 cut(s) 120, 363, 998, 1118, 1397
NlaIV GGNNCC 5 cut(s) 406, 467, 578, 601, 1225
NmuCI GTSAC 2 cut(s) 833, 1324
NspI RCATGY 1 cut(s) 1118
NspV TTCGAA 1 cut(s) 1277
OliI CACNNNNGTG 1 cut(s) 783
PfeI GAWTC 4 cut(s) 416, 628, 908, 1055
PkrI GCNGC 7 cut(s) 308, 394, 646, 1102, 1144, 1312, 1315
PleI GAGTC 3 cut(s) 38, 807, 1265
PpsI GAGTC 3 cut(s) 38, 807, 1265
PshAI GACNNNNGTC 1 cut(s) 1336
Psp6I CCWGG 4 cut(s) 129, 435, 441, 1343
PspFI CCCAGC 2 cut(s) 336, 1034
PspGI CCWGG 4 cut(s) 129, 435, 441, 1343
PspN4I GGNNCC 5 cut(s) 406, 467, 578, 601, 1225
PspPI GGNCC 5 cut(s) 282, 433, 439, 499, 600
PstI CTGCAG 1 cut(s) 185
PsuI RGATCY 2 cut(s) 293, 427
PvuII CAGCTG 2 cut(s) 336, 1313
RsaI GTAC 1 cut(s) 1225
RsaNI GTAC 1 cut(s) 1224
RseI CAYNNNNRTG 1 cut(s) 783
Rsr2I CGGWCCG 1 cut(s) 282
RsrII CGGWCCG 1 cut(s) 282
SalI GTCGAC 1 cut(s) 41
SaqAI TTAA 4 cut(s) 222, 455, 933, 1355
SatI GCNGC 7 cut(s) 307, 393, 645, 1101, 1143, 1311, 1314
Sau3AI GATC 9 cut(s) 79, 124, 293, 385, 427, 673, 757, 853, 1134
Sau96I GGNCC 5 cut(s) 282, 433, 439, 499, 600
SbfI CCTGCAGG 1 cut(s) 185
SchI GAGTC 3 cut(s) 38, 807, 1265
ScrFI CCNGG 4 cut(s) 131, 437, 443, 1345
SdaI CCTGCAGG 1 cut(s) 185
SduI GDGCHC 5 cut(s) 343, 409, 470, 539, 579
SfaNI GCATC 2 cut(s) 1182, 1388
SfcI CTRYAG 1 cut(s) 181
SfuI TTCGAA 1 cut(s) 1277
SgrAI CRCCGGYG 1 cut(s) 302
SinI GGWCC 2 cut(s) 282, 600
SmiMI CAYNNNNRTG 1 cut(s) 783
SmlI CTYRAG 1 cut(s) 1354
SmoI CTYRAG 1 cut(s) 1354
SpeI ACTAGT 1 cut(s) 377
Sse8387I CCTGCAGG 1 cut(s) 185
SsiI CCGC 1 cut(s) 306
SspMI CTAG 4 cut(s) 378, 695, 1251, 1423
StyD4I CCNGG 4 cut(s) 129, 435, 441, 1343
StyI CCWWGG 2 cut(s) 669, 804
TaaI ACNGT 5 cut(s) 8, 282, 345, 651, 833
TaqI TCGA 7 cut(s) 42, 312, 705, 1058, 1148, 1277, 1330
TauI GCSGC 1 cut(s) 309
TfiI GAWTC 4 cut(s) 416, 628, 908, 1055
Tru1I TTAA 4 cut(s) 222, 455, 933, 1355
Tru9I TTAA 4 cut(s) 222, 455, 933, 1355
TscAI CASTG 4 cut(s) 160, 654, 1144, 1252
TseFI GTSAC 2 cut(s) 833, 1324
TseI GCWGC 6 cut(s) 392, 644, 1100, 1142, 1310, 1313
Tsp45I GTSAC 2 cut(s) 833, 1324
TspDTI ATGAA 3 cut(s) 17, 752, 804
TspRI CASTG 4 cut(s) 160, 654, 1144, 1252
Vha464I CTTAAG 1 cut(s) 1354
VpaK11BI GGWCC 2 cut(s) 282, 600
XapI RAATTY 2 cut(s) 476, 1372
XceI RCATGY 1 cut(s) 1118
XmiI GTMKAC 1 cut(s) 42
XspI CTAG 4 cut(s) 378, 695, 1251, 1423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.