Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003909.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

48852 .. 50696

Gene Structure 1845 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003909.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

atgtcatcacaaggggtccgcgattttaggacgaaaattgagatgctctctcgacttcatcaccgccatttagtgtctcttattggatattgtgccgatgaaggtgagatgatcttggtgtatgattacatggcacgtgggactcttggtgaccatctctccgcactgataatccacctctttcgtgggaacaacggcttcaaatttgtattggtgcagcgcaagagagaaccctgcggccgagatcgatccttccttggcctacaatcaacttattacaagtcagatcagcgcaaactcagtaacctagatcaaaacctcgcttggcctctcggcagcgagttggcactccctcgcacacgtcaccaagccagaaggtcacatgtaagccaagaagatctcggtcgagtggcacgtggccgagacgatttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009741 GO:0009787 GO:0009788 GO:0009791 GO:0009856 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010118 GO:0010483 GO:0010646 GO:0010648 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0030308 GO:0030312 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0043680 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044426 GO:0044462 GO:0044464 GO:0044703 GO:0044706 GO:0045926 GO:0046777 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051703 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

144

Amino Acids

16.66

Weight (kDa)

9.85

Isoelectric Point (pI)

45.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	21
AciI	CCGC	4 cut(s)	19, 64, 162, 237
AclWI	GGATC	1 cut(s)	243
AcoI	YGGCCR	2 cut(s)	238, 418
AcsI	RAATTY	1 cut(s)	203
AcvI	CACGTG	2 cut(s)	137, 416
AflIII	ACRYGT	2 cut(s)	359, 382
AgsI	TTSAA	1 cut(s)	202
AjiI	CACGTC	1 cut(s)	362
Alw26I	GTCTC	2 cut(s)	81, 417
AlwI	GGATC	1 cut(s)	243
AoxI	GGCC	4 cut(s)	238, 259, 326, 418
ApeKI	GCWGC	2 cut(s)	217, 336
ApoI	RAATTY	1 cut(s)	203
AspLEI	GCGC	2 cut(s)	222, 294
AspS9I	GGNCC	1 cut(s)	16
AsuHPI	GGTGA	4 cut(s)	53, 116, 161, 356
AvaII	GGWCC	1 cut(s)	16
BbrPI	CACGTG	2 cut(s)	137, 416
BbvI	GCAGC	2 cut(s)	229, 348
BccI	CCATC	1 cut(s)	162
BceAI	ACGGC	1 cut(s)	211
BcoDI	GTCTC	2 cut(s)	81, 417
BfaI	CTAG	1 cut(s)	308
BglII	AGATCT	1 cut(s)	397
BisI	GCNGC	3 cut(s)	218, 238, 337
BlsI	GCNGC	3 cut(s)	219, 239, 338
Bme18I	GGWCC	1 cut(s)	16
BmgBI	CACGTC	1 cut(s)	362
BmgT120I	GGNCC	1 cut(s)	16
BmiI	GGNNCC	1 cut(s)	17
BmsI	GCATC	1 cut(s)	33
BplI	GAGNNNNNCTC	2 cut(s)	32, 64
Bsa29I	ATCGAT	1 cut(s)	247
BsaAI	YACGTR	2 cut(s)	137, 416
BsaJI	CCNNGG	1 cut(s)	256
BsaXI	ACNNNNNCTCC	2 cut(s)	143, 173
BseCI	ATCGAT	1 cut(s)	247
BseDI	CCNNGG	1 cut(s)	256
BseMII	CTCAG	1 cut(s)	313
BseX3I	CGGCCG	1 cut(s)	238
BseXI	GCAGC	2 cut(s)	229, 348
BsgI	GTGCAG	1 cut(s)	236
Bsh1236I	CGCG	1 cut(s)	21
Bsh1285I	CGRYCG	2 cut(s)	241, 406
BshFI	GGCC	4 cut(s)	240, 261, 328, 420
BshVI	ATCGAT	1 cut(s)	247
BsiEI	CGRYCG	2 cut(s)	241, 406
BslFI	GGGAC	1 cut(s)	154
BsmAI	GTCTC	2 cut(s)	81, 417
BsmBI	CGTCTC	1 cut(s)	417
BsmFI	GGGAC	1 cut(s)	154
BsnI	GGCC	4 cut(s)	240, 261, 328, 420
Bsp143I	GATC	6 cut(s)	111, 244, 248, 286, 310, 397
BspACI	CCGC	4 cut(s)	19, 64, 162, 237
BspANI	GGCC	4 cut(s)	240, 261, 328, 420
BspCNI	CTCAG	1 cut(s)	312
BspDI	ATCGAT	1 cut(s)	247
BspFNI	CGCG	1 cut(s)	21
BspLI	GGNNCC	1 cut(s)	17
BspPI	GGATC	1 cut(s)	243
BssECI	CCNNGG	1 cut(s)	256
BssMI	GATC	6 cut(s)	111, 244, 248, 286, 310, 397
BssT1I	CCWWGG	1 cut(s)	256
BstBAI	YACGTR	2 cut(s)	137, 416
BstDEI	CTNAG	1 cut(s)	299
BstEII	GGTNACC	1 cut(s)	149
BstFNI	CGCG	1 cut(s)	21
BstHHI	GCGC	2 cut(s)	222, 294
BstKTI	GATC	6 cut(s)	114, 247, 251, 289, 313, 400
BstMAI	GTCTC	2 cut(s)	81, 417
BstMBI	GATC	6 cut(s)	111, 244, 248, 286, 310, 397
BstMCI	CGRYCG	2 cut(s)	241, 406
BstNSI	RCATGY	1 cut(s)	386
BstPI	GGTNACC	1 cut(s)	149
BstUI	CGCG	1 cut(s)	21
BstV1I	GCAGC	2 cut(s)	229, 348
BstX2I	RGATCY	1 cut(s)	397
BstYI	RGATCY	1 cut(s)	397
BstZI	CGGCCG	1 cut(s)	238
Bsu15I	ATCGAT	1 cut(s)	247
BsuRI	GGCC	4 cut(s)	240, 261, 328, 420
BsuTUI	ATCGAT	1 cut(s)	247
BtrI	CACGTC	1 cut(s)	362
BtsIMutI	CAGTG	1 cut(s)	164
CfoI	GCGC	2 cut(s)	222, 294
Cfr13I	GGNCC	1 cut(s)	16
ClaI	ATCGAT	1 cut(s)	247
CviAII	CATG	2 cut(s)	130, 383
CviJI	RGCY	7 cut(s)	198, 240, 261, 328, 371, 390, 420
CviKI_1	RGCY	7 cut(s)	198, 240, 261, 328, 371, 390, 420
DdeI	CTNAG	1 cut(s)	299
DpnI	GATC	6 cut(s)	113, 246, 250, 288, 312, 399
DpnII	GATC	6 cut(s)	111, 244, 248, 286, 310, 397
EaeI	YGGCCR	2 cut(s)	238, 418
EagI	CGGCCG	1 cut(s)	238
EclXI	CGGCCG	1 cut(s)	238
Eco130I	CCWWGG	1 cut(s)	256
Eco47I	GGWCC	1 cut(s)	16
Eco52I	CGGCCG	1 cut(s)	238
Eco72I	CACGTG	2 cut(s)	137, 416
Eco91I	GGTNACC	1 cut(s)	149
EcoO65I	GGTNACC	1 cut(s)	149
EcoT14I	CCWWGG	1 cut(s)	256
ErhI	CCWWGG	1 cut(s)	256
Esp3I	CGTCTC	1 cut(s)	417
FaeI	CATG	2 cut(s)	133, 386
FaiI	YATR	3 cut(s)	123, 131, 384
FaqI	GGGAC	1 cut(s)	154
FatI	CATG	2 cut(s)	129, 382
Fnu4HI	GCNGC	3 cut(s)	218, 238, 337
Fsp4HI	GCNGC	3 cut(s)	218, 238, 337
FspBI	CTAG	1 cut(s)	308
GlaI	GCGC	2 cut(s)	221, 293
GluI	GCNGC	3 cut(s)	218, 238, 337
HaeIII	GGCC	4 cut(s)	240, 261, 328, 420
HhaI	GCGC	2 cut(s)	222, 294
Hin1II	CATG	2 cut(s)	133, 386
Hin6I	GCGC	2 cut(s)	220, 292
HinP1I	GCGC	2 cut(s)	220, 292
HinfI	GANTC	1 cut(s)	142
HphI	GGTGA	4 cut(s)	53, 116, 161, 356
Hpy188I	TCNGA	1 cut(s)	286
Hpy188III	TCNNGA	1 cut(s)	51
HpyAV	CCTTC	3 cut(s)	95, 262, 369
HpyCH4IV	ACGT	3 cut(s)	136, 361, 415
HpyCH4V	TGCA	1 cut(s)	217
HpyF3I	CTNAG	1 cut(s)	299
HpySE526I	ACGT	3 cut(s)	136, 361, 415
Hsp92II	CATG	2 cut(s)	133, 386
HspAI	GCGC	2 cut(s)	220, 292
Kzo9I	GATC	6 cut(s)	111, 244, 248, 286, 310, 397
LpnPI	CCDG	2 cut(s)	247, 385
Lsp1109I	GCAGC	2 cut(s)	229, 348
LweI	GCATC	1 cut(s)	33
MaeI	CTAG	1 cut(s)	308
MaeII	ACGT	3 cut(s)	136, 361, 415
MaeIII	GTNAC	4 cut(s)	149, 302, 362, 378
MalI	GATC	6 cut(s)	113, 246, 250, 288, 312, 399
MboI	GATC	6 cut(s)	111, 244, 248, 286, 310, 397
MboII	GAAGA	1 cut(s)	407
MflI	RGATCY	1 cut(s)	397
MluCI	AATT	2 cut(s)	36, 203
MlyI	GAGTC	1 cut(s)	136
MnlI	CCTC	4 cut(s)	188, 329, 339, 363
MvnI	CGCG	1 cut(s)	21
NdeII	GATC	6 cut(s)	111, 244, 248, 286, 310, 397
NlaIII	CATG	2 cut(s)	133, 386
NlaIV	GGNNCC	1 cut(s)	17
NmeAIII	GCCGAG	2 cut(s)	266, 312
NmuCI	GTSAC	3 cut(s)	149, 362, 378
NspI	RCATGY	1 cut(s)	386
PciI	ACATGT	1 cut(s)	382
PcsI	WCGNNNNNNNCGW	1 cut(s)	412
PkrI	GCNGC	3 cut(s)	219, 239, 338
PleI	GAGTC	1 cut(s)	136
PmaCI	CACGTG	2 cut(s)	137, 416
PmlI	CACGTG	2 cut(s)	137, 416
PpsI	GAGTC	1 cut(s)	136
Ppu21I	YACGTR	2 cut(s)	137, 416
PscI	ACATGT	1 cut(s)	382
PspCI	CACGTG	2 cut(s)	137, 416
PspEI	GGTNACC	1 cut(s)	149
PspN4I	GGNNCC	1 cut(s)	17
PspPI	GGNCC	1 cut(s)	16
PsuI	RGATCY	1 cut(s)	397
SatI	GCNGC	3 cut(s)	218, 238, 337
Sau3AI	GATC	6 cut(s)	111, 244, 248, 286, 310, 397
Sau96I	GGNCC	1 cut(s)	16
SchI	GAGTC	1 cut(s)	136
SetI	ASST	8 cut(s)	106, 139, 180, 309, 321, 364, 380, 418
SfaNI	GCATC	1 cut(s)	33
SinI	GGWCC	1 cut(s)	16
Sse9I	AATT	2 cut(s)	36, 203
SsiI	CCGC	4 cut(s)	19, 64, 162, 237
SspMI	CTAG	1 cut(s)	308
StyI	CCWWGG	1 cut(s)	256
TaiI	ACGT	3 cut(s)	139, 364, 418
TaqI	TCGA	3 cut(s)	52, 247, 406
TaqII	GACCGA	1 cut(s)	392
TasI	AATT	2 cut(s)	36, 203
TauI	GCSGC	1 cut(s)	240
TscAI	CASTG	1 cut(s)	171
TseFI	GTSAC	3 cut(s)	149, 362, 378
TseI	GCWGC	2 cut(s)	217, 336
Tsp45I	GTSAC	3 cut(s)	149, 362, 378
TspDTI	ATGAA	2 cut(s)	47, 114
TspRI	CASTG	1 cut(s)	171
VpaK11BI	GGWCC	1 cut(s)	16
XapI	RAATTY	1 cut(s)	203
XceI	RCATGY	1 cut(s)	386
XcmI	CCANNNNNNNNNTGG	1 cut(s)	182
XspI	CTAG	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.