Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003910.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

50874 .. 53255

Gene Structure 2382 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

atgccttcctttgcacatgtatccttaattcttgcacctgatcgaagtaagttatcaaaaaggcatggagcaacttcagtgggccagtttagggagatgggctatctaccacaggcaatggtgaactacttggcactgttaggttggggtgatggcactgaaaatgaatttttcaccttggagcagctagttgaaaaattttcaattggtcgtgtcaacaaaagtggtgccattttcgacaataccaagttaaggtggatgaatggtcaacacttacgagcacttccatcagaggagttgaaaaaacgtattggtgagcaatggaaaagtagcagtatccttacagaatcagagggttcatttgtagaagatgcagttgagcttcttaaggatgggattgatttggtaccagatgcagataaagcactctcagacttgctagcatatcctttacacgccactttaaccagtccggaagccaaacctctcgtagaagacaacctgtctgagttttcagccagtttcatagctgcttatgacaatggtgaactccttgccgcacttgaagaaggccatgctggttggaagaactgggtgaagagctttggcaaatcacttaagcggaagggaaaatcacttttcatgcccctacgagtgctgttaacaggaaagtttcacggcccagatatgggggctagcgtgcttttactgcacaaagccggaaaatatggtgttgttactcctcaagctgggttcgtgacactggatgagaggttcaacaaattgagacaagttgactgggaagcattaaccaaggatcagcctctcctggagactgcagaggcagtatcaaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006424 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009791 GO:0009908 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0035670 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0071704 GO:0071840 GO:0090304 GO:0090567 GO:0099402 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko00970 ko01100 ko01110 ko01120 map00860 map00970 map01100 map01110 map01120

Pfam Domains

Protein Families

tRNA-synt_1c

Protein Analysis

285

Amino Acids

31.5

Weight (kDa)

6.02

Isoelectric Point (pI)

36.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1c	PF00749	2 - 86	2.3e-16	tRNA synthetases class I (E and Q), catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	406
AccB1I	GGYRCC	2 cut(s)	227, 406
AccIII	TCCGGA	1 cut(s)	472
AciI	CCGC	2 cut(s)	558, 622
AclWI	GGATC	1 cut(s)	825
AcsI	RAATTY	2 cut(s)	167, 197
AcuI	CTGAAG	1 cut(s)	60
AfaI	GTAC	1 cut(s)	408
AfiI	CCNNNNNNNGG	5 cut(s)	91, 252, 688, 689, 749
AflII	CTTAAG	2 cut(s)	386, 617
AflIII	ACRYGT	1 cut(s)	16
AgsI	TTSAA	5 cut(s)	194, 204, 301, 566, 778
AhdI	GACNNNNNGTC	1 cut(s)	502
AjnI	CCWGG	1 cut(s)	828
AloI	GAACNNNNNNTCC	2 cut(s)	758, 790
AluBI	AGCT	5 cut(s)	187, 382, 530, 603, 749
AluI	AGCT	5 cut(s)	187, 382, 530, 603, 749
Alw21I	GWGCWC	1 cut(s)	283
Alw26I	GTCTC	2 cut(s)	781, 827
AlwI	GGATC	1 cut(s)	825
Aor13HI	TCCGGA	1 cut(s)	472
AoxI	GGCC	3 cut(s)	82, 571, 679
ApeKI	GCWGC	2 cut(s)	184, 530
ApoI	RAATTY	2 cut(s)	167, 197
Asp718I	GGTACC	1 cut(s)	406
AspS9I	GGNCC	2 cut(s)	82, 680
AsuHPI	GGTGA	6 cut(s)	133, 161, 166, 326, 557, 607
AsuNHI	GCTAGC	2 cut(s)	439, 695
BanI	GGYRCC	2 cut(s)	227, 406
BbsI	GAAGAC	1 cut(s)	501
Bbv12I	GWGCWC	1 cut(s)	283
BbvI	GCAGC	2 cut(s)	196, 517
BccI	CCATC	4 cut(s)	91, 146, 295, 386
BceAI	ACGGC	1 cut(s)	694
BciT130I	CCWGG	1 cut(s)	830
BciVI	GTATCC	2 cut(s)	31, 347
BcoDI	GTCTC	2 cut(s)	781, 827
BfaI	CTAG	3 cut(s)	188, 440, 696
BfmI	CTRYAG	1 cut(s)	837
BfrI	CTTAAG	2 cut(s)	386, 617
BfuI	GTATCC	2 cut(s)	31, 347
BisI	GCNGC	3 cut(s)	185, 531, 558
BlsI	GCNGC	3 cut(s)	186, 532, 559
Bme1390I	CCNGG	1 cut(s)	830
BmeRI	GACNNNNNGTC	1 cut(s)	502
BmgT120I	GGNCC	2 cut(s)	82, 680
BmiI	GGNNCC	2 cut(s)	229, 408
BmrFI	CCNGG	1 cut(s)	830
BmrI	ACTGGG	2 cut(s)	601, 808
BmsI	GCATC	2 cut(s)	361, 403
BmtI	GCTAGC	2 cut(s)	443, 699
BmuI	ACTGGG	2 cut(s)	601, 808
BpiI	GAAGAC	1 cut(s)	501
BpmI	CTGGAG	1 cut(s)	851
BpuEI	CTTGAG	1 cut(s)	729
BsaJI	CCNNGG	2 cut(s)	177, 813
BsaWI	WCCGGW	1 cut(s)	472
Bsc4I	CCNNNNNNNGG	5 cut(s)	91, 252, 688, 689, 749
Bse1I	ACTGG	6 cut(s)	85, 468, 519, 596, 768, 803
Bse3DI	GCAATG	2 cut(s)	123, 326
BseAI	TCCGGA	1 cut(s)	472
BseBI	CCWGG	1 cut(s)	830
BseDI	CCNNGG	2 cut(s)	177, 813
BseGI	GGATG	3 cut(s)	264, 397, 772
BseLI	CCNNNNNNNGG	5 cut(s)	91, 252, 688, 689, 749
BseMI	GCAATG	2 cut(s)	123, 326
BseMII	CTCAG	2 cut(s)	444, 498
BseNI	ACTGG	6 cut(s)	85, 468, 519, 596, 768, 803
BseRI	GAGGAG	2 cut(s)	308, 732
BseXI	GCAGC	2 cut(s)	196, 517
BseYI	CCCAGC	1 cut(s)	749
BsgI	GTGCAG	1 cut(s)	695
BshFI	GGCC	3 cut(s)	84, 573, 681
BshNI	GGYRCC	2 cut(s)	227, 406
BsiHKAI	GWGCWC	1 cut(s)	283
BsiSI	CCGG	2 cut(s)	473, 720
BslI	CCNNNNNNNGG	5 cut(s)	91, 252, 688, 689, 749
BsmAI	GTCTC	2 cut(s)	781, 827
BsnI	GGCC	3 cut(s)	84, 573, 681
Bsp1286I	GDGCHC	1 cut(s)	283
Bsp13I	TCCGGA	1 cut(s)	472
Bsp143I	GATC	2 cut(s)	40, 817
BspACI	CCGC	2 cut(s)	558, 622
BspANI	GGCC	3 cut(s)	84, 573, 681
BspCNI	CTCAG	2 cut(s)	443, 499
BspEI	TCCGGA	1 cut(s)	472
BspLI	GGNNCC	2 cut(s)	229, 408
BspMAI	CTGCAG	1 cut(s)	841
BspOI	GCTAGC	2 cut(s)	443, 699
BspPI	GGATC	1 cut(s)	825
BspQI	GCTCTTC	1 cut(s)	593
BspT107I	GGYRCC	2 cut(s)	227, 406
BspTI	CTTAAG	2 cut(s)	386, 617
BsrDI	GCAATG	2 cut(s)	123, 326
BsrI	ACTGG	6 cut(s)	85, 468, 519, 596, 768, 803
BssECI	CCNNGG	2 cut(s)	177, 813
BssMI	GATC	2 cut(s)	40, 817
BssT1I	CCWWGG	2 cut(s)	177, 813
Bst2UI	CCWGG	1 cut(s)	830
Bst4CI	ACNGT	1 cut(s)	138
Bst6I	CTCTTC	1 cut(s)	593
BstAFI	CTTAAG	2 cut(s)	386, 617
BstC8I	GCNNGC	3 cut(s)	441, 697, 701
BstDEI	CTNAG	2 cut(s)	430, 507
BstF5I	GGATG	3 cut(s)	264, 397, 772
BstKTI	GATC	2 cut(s)	43, 820
BstMAI	GTCTC	2 cut(s)	781, 827
BstMBI	GATC	2 cut(s)	40, 817
BstMWI	GCNNNNNNNGC	2 cut(s)	422, 709
BstNI	CCWGG	1 cut(s)	830
BstNSI	RCATGY	1 cut(s)	20
BstSCI	CCNGG	1 cut(s)	828
BstSFI	CTRYAG	1 cut(s)	837
BstV1I	GCAGC	2 cut(s)	196, 517
BstV2I	GAAGAC	1 cut(s)	501
BsuI	GTATCC	2 cut(s)	31, 347
BsuRI	GGCC	3 cut(s)	84, 573, 681
BtsCI	GGATG	3 cut(s)	264, 397, 772
BtsIMutI	CAGTG	4 cut(s)	84, 134, 156, 761
Cac8I	GCNNGC	3 cut(s)	441, 697, 701
Cfr13I	GGNCC	2 cut(s)	82, 680
Csp6I	GTAC	1 cut(s)	407
CspCI	CAANNNNNGTGG	4 cut(s)	60, 95, 205, 240
CviAII	CATG	4 cut(s)	17, 65, 575, 643
CviQI	GTAC	1 cut(s)	407
DdeI	CTNAG	2 cut(s)	430, 507
DpnI	GATC	2 cut(s)	42, 819
DpnII	GATC	2 cut(s)	40, 817
DriI	GACNNNNNGTC	1 cut(s)	502
Eam1104I	CTCTTC	1 cut(s)	593
Eam1105I	GACNNNNNGTC	1 cut(s)	502
EarI	CTCTTC	1 cut(s)	593
Eco130I	CCWWGG	2 cut(s)	177, 813
Eco57I	CTGAAG	1 cut(s)	60
EcoRII	CCWGG	1 cut(s)	828
EcoT14I	CCWWGG	2 cut(s)	177, 813
ErhI	CCWWGG	2 cut(s)	177, 813
FaeI	CATG	4 cut(s)	20, 68, 578, 646
FaiI	YATR	9 cut(s)	18, 66, 445, 527, 537, 576, 644, 689, 729
FatI	CATG	4 cut(s)	16, 64, 574, 642
Fnu4HI	GCNGC	3 cut(s)	185, 531, 558
FokI	GGATG	3 cut(s)	271, 404, 779
Fsp4HI	GCNGC	3 cut(s)	185, 531, 558
FspBI	CTAG	3 cut(s)	188, 440, 696
GluI	GCNGC	3 cut(s)	185, 531, 558
GsaI	CCCAGC	1 cut(s)	753
GsuI	CTGGAG	1 cut(s)	851
HaeIII	GGCC	3 cut(s)	84, 573, 681
HapII	CCGG	2 cut(s)	473, 720
Hin1II	CATG	4 cut(s)	20, 68, 578, 646
HincII	GTYRAC	4 cut(s)	217, 269, 663, 796
HindII	GTYRAC	4 cut(s)	217, 269, 663, 796
HinfI	GANTC	1 cut(s)	347
HpaI	GTTAAC	1 cut(s)	663
HpaII	CCGG	2 cut(s)	473, 720
HphI	GGTGA	6 cut(s)	133, 161, 166, 326, 557, 607
Hpy166II	GTNNAC	6 cut(s)	124, 217, 269, 548, 663, 796
Hpy188I	TCNGA	4 cut(s)	292, 352, 433, 508
Hpy188III	TCNNGA	2 cut(s)	473, 757
Hpy8I	GTNNAC	6 cut(s)	124, 217, 269, 548, 663, 796
HpyAV	CCTTC	3 cut(s)	15, 563, 619
HpyCH4III	ACNGT	1 cut(s)	138
HpyCH4IV	ACGT	1 cut(s)	307
HpyCH4V	TGCA	6 cut(s)	14, 35, 374, 416, 712, 839
HpyF10VI	GCNNNNNNNGC	2 cut(s)	422, 709
HpyF3I	CTNAG	2 cut(s)	430, 507
HpySE526I	ACGT	1 cut(s)	307
Hsp92II	CATG	4 cut(s)	20, 68, 578, 646
Kpn2I	TCCGGA	1 cut(s)	472
KpnI	GGTACC	1 cut(s)	410
KspAI	GTTAAC	1 cut(s)	663
Kzo9I	GATC	2 cut(s)	40, 817
LguI	GCTCTTC	1 cut(s)	593
LmnI	GCTCC	2 cut(s)	68, 181
Lsp1109I	GCAGC	2 cut(s)	196, 517
LweI	GCATC	2 cut(s)	361, 403
MaeI	CTAG	3 cut(s)	188, 440, 696
MaeII	ACGT	1 cut(s)	307
MaeIII	GTNAC	2 cut(s)	736, 757
MalI	GATC	2 cut(s)	42, 819
MboI	GATC	2 cut(s)	40, 817
MboII	GAAGA	5 cut(s)	380, 506, 578, 598, 610
MfeI	CAATTG	1 cut(s)	204
MhlI	GDGCHC	1 cut(s)	283
MluCI	AATT	6 cut(s)	27, 167, 197, 204, 782, 853
MmeI	TCCRAC	1 cut(s)	563
MnlI	CCTC	7 cut(s)	286, 346, 495, 753, 765, 834, 835
MroI	TCCGGA	1 cut(s)	472
MseI	TTAA	7 cut(s)	26, 251, 387, 464, 618, 662, 809
MspCI	CTTAAG	2 cut(s)	386, 617
MspI	CCGG	2 cut(s)	473, 720
MspR9I	CCNGG	1 cut(s)	830
MunI	CAATTG	1 cut(s)	204
MvaI	CCWGG	1 cut(s)	830
MwoI	GCNNNNNNNGC	2 cut(s)	422, 709
NdeII	GATC	2 cut(s)	40, 817
NheI	GCTAGC	2 cut(s)	439, 695
NlaIII	CATG	4 cut(s)	20, 68, 578, 646
NlaIV	GGNNCC	2 cut(s)	229, 408
NmuCI	GTSAC	1 cut(s)	757
NspI	RCATGY	1 cut(s)	20
PciI	ACATGT	1 cut(s)	16
PciSI	GCTCTTC	1 cut(s)	593
PfeI	GAWTC	1 cut(s)	347
PfoI	TCCNGGA	1 cut(s)	828
PkrI	GCNGC	3 cut(s)	186, 532, 559
PscI	ACATGT	1 cut(s)	16
Psp6I	CCWGG	1 cut(s)	828
PspFI	CCCAGC	1 cut(s)	749
PspGI	CCWGG	1 cut(s)	828
PspN4I	GGNNCC	2 cut(s)	229, 408
PspPI	GGNCC	2 cut(s)	82, 680
PstI	CTGCAG	1 cut(s)	841
RsaI	GTAC	1 cut(s)	408
RsaNI	GTAC	1 cut(s)	407
SapI	GCTCTTC	1 cut(s)	593
SaqAI	TTAA	7 cut(s)	26, 251, 387, 464, 618, 662, 809
SatI	GCNGC	3 cut(s)	185, 531, 558
Sau3AI	GATC	2 cut(s)	40, 817
Sau96I	GGNCC	2 cut(s)	82, 680
ScrFI	CCNGG	1 cut(s)	830
SduI	GDGCHC	1 cut(s)	283
SfaNI	GCATC	2 cut(s)	361, 403
SfcI	CTRYAG	1 cut(s)	837
SmlI	CTYRAG	3 cut(s)	386, 617, 744
SmoI	CTYRAG	3 cut(s)	386, 617, 744
Sse9I	AATT	6 cut(s)	27, 167, 197, 204, 782, 853
SsiI	CCGC	2 cut(s)	558, 622
SspMI	CTAG	3 cut(s)	188, 440, 696
StyD4I	CCNGG	1 cut(s)	828
StyI	CCWWGG	2 cut(s)	177, 813
TaaI	ACNGT	1 cut(s)	138
TaiI	ACGT	1 cut(s)	310
TaqI	TCGA	2 cut(s)	43, 237
TasI	AATT	6 cut(s)	27, 167, 197, 204, 782, 853
TauI	GCSGC	1 cut(s)	560
TfiI	GAWTC	1 cut(s)	347
Tru1I	TTAA	7 cut(s)	26, 251, 387, 464, 618, 662, 809
Tru9I	TTAA	7 cut(s)	26, 251, 387, 464, 618, 662, 809
TscAI	CASTG	4 cut(s)	84, 141, 163, 768
TseFI	GTSAC	1 cut(s)	757
TseI	GCWGC	2 cut(s)	184, 530
Tsp45I	GTSAC	1 cut(s)	757
TspDTI	ATGAA	5 cut(s)	180, 275, 348, 514, 631
TspRI	CASTG	4 cut(s)	84, 141, 163, 768
Vha464I	CTTAAG	2 cut(s)	386, 617
XapI	RAATTY	2 cut(s)	167, 197
XceI	RCATGY	1 cut(s)	20
XspI	CTAG	3 cut(s)	188, 440, 696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.