Rmu_sc0003919.1_g000014

protein FAR1-RELATED SEQUENCE

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003919.1
N/A
Physical Location & Seq
Reverse (-)
66459 .. 67165
707 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 486 bp
atgtatcagcaatacattgcaaaccagactgatgttgatatggatggaaattgtggatatagattcgttgctatctcaatggggtttggtcatgatggttggcgtacggcacgtaaacatttattagatgagcttagagggaaccgcactttctatgaagaccacatttttggggccaaacggtttcatgaactagagaattgccttgactattttgttgatgggtttgcacctgaaaactttgggatgaccatgcctgatatgggacatattattgccacatgttatggtgtgacagtaaatttgatatctcaatctgttccaattcctccagttactcctctatggcacaggtaccaagttaataatggacagttgtacaacatttatgagcaacgcatagatcaattcaagaaactcgaaaatatggaagacgttgccaccacagatacatttgcagacattgtgcatcttgatatcgattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

161

Amino Acids

18.68

Weight (kDa)

4.87

Isoelectric Point (pI)

31.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 354
AccB1I GGYRCC 1 cut(s) 354
AciI CCGC 1 cut(s) 145
AcsI RAATTY 1 cut(s) 301
AfaI GTAC 3 cut(s) 106, 356, 380
AfiI CCNNNNNNNGG 1 cut(s) 263
AflIII ACRYGT 1 cut(s) 281
AgsI TTSAA 1 cut(s) 412
AluBI AGCT 1 cut(s) 133
AluI AGCT 1 cut(s) 133
AoxI GGCC 1 cut(s) 174
ApoI RAATTY 1 cut(s) 301
ArsI GACNNNNNNTTYG 4 cut(s) 152, 184, 286, 318
Asp718I GGTACC 1 cut(s) 354
AspS9I GGNCC 1 cut(s) 174
BanI GGYRCC 1 cut(s) 354
BbsI GAAGAC 2 cut(s) 165, 438
BccI CCATC 3 cut(s) 38, 89, 215
BceAI ACGGC 1 cut(s) 123
BfaI CTAG 1 cut(s) 194
BmgT120I GGNCC 1 cut(s) 174
BmiI GGNNCC 3 cut(s) 143, 175, 356
BmsI GCATC 1 cut(s) 478
BpiI GAAGAC 2 cut(s) 165, 438
BpmI CTGGAG 1 cut(s) 315
Bsa29I ATCGAT 1 cut(s) 480
BsaAI YACGTR 1 cut(s) 113
Bsc4I CCNNNNNNNGG 1 cut(s) 263
Bse1I ACTGG 1 cut(s) 332
Bse3DI GCAATG 1 cut(s) 15
BseCI ATCGAT 1 cut(s) 480
BseGI GGATG 2 cut(s) 49, 252
BseLI CCNNNNNNNGG 1 cut(s) 263
BseMI GCAATG 1 cut(s) 15
BseNI ACTGG 1 cut(s) 332
BseRI GAGGAG 1 cut(s) 330
BshFI GGCC 1 cut(s) 176
BshNI GGYRCC 1 cut(s) 354
BshVI ATCGAT 1 cut(s) 480
BsiWI CGTACG 1 cut(s) 104
BslFI GGGAC 1 cut(s) 279
BslI CCNNNNNNNGG 1 cut(s) 263
BsmFI GGGAC 1 cut(s) 279
BsnI GGCC 1 cut(s) 176
Bsp1407I TGTACA 1 cut(s) 378
Bsp143I GATC 1 cut(s) 403
BspACI CCGC 1 cut(s) 145
BspANI GGCC 1 cut(s) 176
BspDI ATCGAT 1 cut(s) 480
BspHI TCATGA 2 cut(s) 91, 187
BspLI GGNNCC 3 cut(s) 143, 175, 356
BspT107I GGYRCC 1 cut(s) 354
BsrDI GCAATG 1 cut(s) 15
BsrGI TGTACA 1 cut(s) 378
BsrI ACTGG 1 cut(s) 332
BssMI GATC 1 cut(s) 403
Bst4CI ACNGT 3 cut(s) 183, 298, 375
BstAUI TGTACA 1 cut(s) 378
BstBAI YACGTR 1 cut(s) 113
BstDEI CTNAG 1 cut(s) 134
BstF5I GGATG 2 cut(s) 49, 252
BstKTI GATC 1 cut(s) 406
BstMBI GATC 1 cut(s) 403
BstNSI RCATGY 1 cut(s) 285
BstV2I GAAGAC 2 cut(s) 165, 438
BstXI CCANNNNNNTGG 1 cut(s) 170
Bsu15I ATCGAT 1 cut(s) 480
BsuRI GGCC 1 cut(s) 176
BsuTUI ATCGAT 1 cut(s) 480
BtsCI GGATG 2 cut(s) 49, 252
CciI TCATGA 2 cut(s) 91, 187
Cfr13I GGNCC 1 cut(s) 174
ClaI ATCGAT 1 cut(s) 480
Csp6I GTAC 3 cut(s) 105, 355, 379
CviAII CATG 4 cut(s) 92, 188, 253, 282
CviJI RGCY 2 cut(s) 133, 176
CviKI_1 RGCY 2 cut(s) 133, 176
CviQI GTAC 3 cut(s) 105, 355, 379
DdeI CTNAG 1 cut(s) 134
DpnI GATC 1 cut(s) 405
DpnII GATC 1 cut(s) 403
Eco32I GATATC 2 cut(s) 309, 478
EcoRV GATATC 2 cut(s) 309, 478
FaeI CATG 4 cut(s) 95, 191, 256, 285
FaqI GGGAC 1 cut(s) 279
FatI CATG 4 cut(s) 91, 187, 252, 281
FokI GGATG 2 cut(s) 56, 259
FspBI CTAG 1 cut(s) 194
GsuI CTGGAG 1 cut(s) 315
HaeIII GGCC 1 cut(s) 176
Hin1II CATG 4 cut(s) 95, 191, 256, 285
HinfI GANTC 1 cut(s) 63
Hpy166II GTNNAC 1 cut(s) 116
Hpy188III TCNNGA 4 cut(s) 92, 188, 412, 473
Hpy8I GTNNAC 1 cut(s) 116
HpyCH4III ACNGT 3 cut(s) 183, 298, 375
HpyCH4IV ACGT 2 cut(s) 112, 435
HpyCH4V TGCA 4 cut(s) 20, 230, 458, 469
HpyF3I CTNAG 1 cut(s) 134
HpySE526I ACGT 2 cut(s) 112, 435
Hsp92II CATG 4 cut(s) 95, 191, 256, 285
KpnI GGTACC 1 cut(s) 358
Kzo9I GATC 1 cut(s) 403
LpnPI CCDG 5 cut(s) 38, 246, 270, 337, 345
LweI GCATC 1 cut(s) 478
MaeI CTAG 1 cut(s) 194
MaeII ACGT 2 cut(s) 112, 435
MaeIII GTNAC 2 cut(s) 292, 334
MalI GATC 1 cut(s) 405
MboI GATC 1 cut(s) 403
MboII GAAGA 2 cut(s) 170, 443
MluCI AATT 5 cut(s) 49, 199, 301, 324, 407
MnlI CCTC 3 cut(s) 131, 339, 351
MseI TTAA 1 cut(s) 363
NdeII GATC 1 cut(s) 403
NlaIII CATG 4 cut(s) 95, 191, 256, 285
NlaIV GGNNCC 3 cut(s) 143, 175, 356
NmuCI GTSAC 1 cut(s) 292
NspI RCATGY 1 cut(s) 285
PagI TCATGA 2 cut(s) 91, 187
PciI ACATGT 1 cut(s) 281
PfeI GAWTC 1 cut(s) 63
Pfl23II CGTACG 1 cut(s) 104
Ppu21I YACGTR 1 cut(s) 113
PscI ACATGT 1 cut(s) 281
PspLI CGTACG 1 cut(s) 104
PspN4I GGNNCC 3 cut(s) 143, 175, 356
PspPI GGNCC 1 cut(s) 174
RsaI GTAC 3 cut(s) 106, 356, 380
RsaNI GTAC 3 cut(s) 105, 355, 379
SaqAI TTAA 1 cut(s) 363
Sau3AI GATC 1 cut(s) 403
Sau96I GGNCC 1 cut(s) 174
SetI ASST 5 cut(s) 115, 135, 235, 356, 438
SfaNI GCATC 1 cut(s) 478
Sse9I AATT 5 cut(s) 49, 199, 301, 324, 407
SsiI CCGC 1 cut(s) 145
SspMI CTAG 1 cut(s) 194
TaaI ACNGT 3 cut(s) 183, 298, 375
TaiI ACGT 2 cut(s) 115, 438
TaqI TCGA 2 cut(s) 420, 480
TasI AATT 5 cut(s) 49, 199, 301, 324, 407
TatI WGTACW 1 cut(s) 378
TfiI GAWTC 1 cut(s) 63
Tru1I TTAA 1 cut(s) 363
Tru9I TTAA 1 cut(s) 363
TseFI GTSAC 1 cut(s) 292
Tsp45I GTSAC 1 cut(s) 292
TspDTI ATGAA 3 cut(s) 171, 176, 204
XapI RAATTY 1 cut(s) 301
XceI RCATGY 1 cut(s) 285
XcmI CCANNNNNNNNNTGG 2 cut(s) 259, 365
XspI CTAG 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.