Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003945.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

36721 .. 39507

Gene Structure 2787 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

atggagaagacgacgccgttcaagaatctcctaagcagagagtaccgtgtccatgagaaggaggtgcgatcggtggcttggaacttcaccggaaccaagctcgcctctggttctgaggatcagaccgctagggtttggcacattgagcctcatggaaatggtaactctgttgaattgaaggggcacagggatagtgtggagcagctgtgttgggatcccaagcatgccgagttggttgccactgcctctatggacaaaactgttcgtctctgggatgatcgtaccgggaagtgtgtgcagctagcggaacttagtggcctgaacattaacattgcatataaacctgatggcgagctcatagcagttggtgatacggtaaatgaaattgcttggaacacaacaagtgaaattttgttcgtgacaactggaaaggatgagaaaggtgttgttgaagtgctatcatacccatctcttcaaccacttgacaggctcatggctcatacagctggttgccactgcattgcaattgacccatgtggaagtgttgactggaatcctaaaagcaatctacttgcatatgctgggaaggacaacatcaatgaaggtattgtgaggatcttcggcttcacaagcacgggctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000346 GO:0000347 GO:0000445 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010267 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0015031 GO:0015833 GO:0015931 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031461 GO:0031503 GO:0032991 GO:0033036 GO:0034613 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044403 GO:0044417 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044766 GO:0045184 GO:0046483 GO:0046784 GO:0046907 GO:0048519 GO:0050657 GO:0050658 GO:0050789 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0051701 GO:0051704 GO:0051716 GO:0051836 GO:0060255 GO:0065007 GO:0070727 GO:0070887 GO:0070918 GO:0071166 GO:0071310 GO:0071359 GO:0071407 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0080008 GO:0090304 GO:1901360 GO:1901698 GO:1901699 GO:1902494 GO:1902579 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00520 ko03013 ko03040 map00520 map03013 map03040

Pfam Domains

Protein Families

ANAPC4_WD40 WD40

Protein Analysis

213

Amino Acids

23.53

Weight (kDa)

5.5

Isoelectric Point (pI)

28.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_CDC20-Fz	PF24807	12 - 181	1.3e-19	CDC20/Fizzy WD40 domain
WD40_Gbeta	PF25391	12 - 124	1.5e-06	G protein beta WD-40 repeat protein
WD40	PF00400	13 - 46	5.5e-08	WD domain, G-beta repeat
Beta-prop_WDR5	PF25175	13 - 121	3.5e-18	WDR5 beta-propeller domain
WD40_Prp19	PF24814	13 - 137	4.7e-17	Prp19 WD40 domain
WDR55	PF24796	13 - 100	2.5e-08	WDR55
Beta-prop_CAF1B_HIR1	PF24105	14 - 103	4.8e-12	CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	15 - 129	1.4e-17	WDR3 first beta-propeller domain
Beta-prop_THOC3	PF25174	18 - 124	1.4e-42	THOC3 beta-propeller domain
EIF3I	PF24805	18 - 139	5.9e-10	EIF3I
WD40_WDHD1_1st	PF24817	20 - 102	2.8e-12	WDHD1 first WD40 domain
Beta-prop_Aladin	PF25460	20 - 117	2.2e-07	Aladin seven-bladed propeller
Beta-prop_TEP1_2nd	PF25047	22 - 95	1.1e-06	TEP-1 second beta-propeller
WD40	PF00400	58 - 92	2.4e-07	WD domain, G-beta repeat
Beta-prop_EML_2	PF23414	69 - 156	6e-09	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_THOC3	PF25174	125 - 181	3.9e-11	THOC3 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	126, 305
AclWI	GGATC	4 cut(s)	126, 209, 222, 623
AcsI	RAATTY	1 cut(s)	408
AcyI	GRCGYC	1 cut(s)	14
AfaI	GTAC	2 cut(s)	44, 283
AfiI	CCNNNNNNNGG	1 cut(s)	58
AgsI	TTSAA	5 cut(s)	22, 173, 178, 452, 476
AluBI	AGCT	5 cut(s)	100, 205, 301, 355, 506
AluI	AGCT	5 cut(s)	100, 205, 301, 355, 506
Alw21I	GWGCWC	1 cut(s)	357
Alw26I	GTCTC	1 cut(s)	272
AlwI	GGATC	4 cut(s)	126, 209, 222, 623
AoxI	GGCC	1 cut(s)	316
ApeKI	GCWGC	2 cut(s)	202, 298
ApoI	RAATTY	1 cut(s)	408
AsuC2I	CCSGG	1 cut(s)	286
AsuHPI	GGTGA	2 cut(s)	79, 380
AsuNHI	GCTAGC	1 cut(s)	301
BaeGI	GKGCMC	1 cut(s)	186
BamHI	GGATCC	1 cut(s)	214
BanII	GRGCYC	1 cut(s)	357
BbsI	GAAGAC	1 cut(s)	14
Bbv12I	GWGCWC	1 cut(s)	357
BbvI	GCAGC	2 cut(s)	214, 310
BccI	CCATC	2 cut(s)	341, 475
BcgI	CGANNNNNNTGC	2 cut(s)	218, 252
BcnI	CCSGG	1 cut(s)	286
BcoDI	GTCTC	1 cut(s)	272
BfaI	CTAG	2 cut(s)	129, 302
BisI	GCNGC	2 cut(s)	203, 299
BlsI	GCNGC	2 cut(s)	204, 300
Bme1390I	CCNGG	1 cut(s)	286
BmiI	GGNNCC	2 cut(s)	94, 216
BmrFI	CCNGG	1 cut(s)	286
BmtI	GCTAGC	1 cut(s)	305
BpiI	GAAGAC	1 cut(s)	14
Bpu10I	CCTNAGC	1 cut(s)	32
BpuMI	CCSGG	1 cut(s)	286
BsaHI	GRCGYC	1 cut(s)	14
BsaWI	WCCGGW	1 cut(s)	89
BsaXI	ACNNNNNCTCC	2 cut(s)	191, 221
Bsc4I	CCNNNNNNNGG	1 cut(s)	58
Bse1I	ACTGG	2 cut(s)	430, 554
Bse3DI	GCAATG	2 cut(s)	330, 519
BseGI	GGATG	2 cut(s)	280, 439
BseLI	CCNNNNNNNGG	1 cut(s)	58
BseMI	GCAATG	2 cut(s)	330, 519
BseMII	CTCAG	1 cut(s)	105
BseNI	ACTGG	2 cut(s)	430, 554
BseSI	GKGCMC	1 cut(s)	186
BseXI	GCAGC	2 cut(s)	214, 310
BseYI	CCCAGC	1 cut(s)	581
BsgI	GTGCAG	1 cut(s)	317
Bsh1285I	CGRYCG	1 cut(s)	71
BshFI	GGCC	1 cut(s)	318
BsiEI	CGRYCG	1 cut(s)	71
BsiHKAI	GWGCWC	1 cut(s)	357
BsiSI	CCGG	2 cut(s)	90, 285
BslI	CCNNNNNNNGG	1 cut(s)	58
BsmAI	GTCTC	1 cut(s)	272
BsmBI	CGTCTC	1 cut(s)	272
BsnI	GGCC	1 cut(s)	318
Bsp1286I	GDGCHC	2 cut(s)	186, 357
Bsp143I	GATC	5 cut(s)	68, 118, 214, 277, 615
BspACI	CCGC	2 cut(s)	126, 305
BspANI	GGCC	1 cut(s)	318
BspCNI	CTCAG	1 cut(s)	106
BspLI	GGNNCC	2 cut(s)	94, 216
BspOI	GCTAGC	1 cut(s)	305
BspPI	GGATC	4 cut(s)	126, 209, 222, 623
BsrDI	GCAATG	2 cut(s)	330, 519
BsrI	ACTGG	2 cut(s)	430, 554
BssMI	GATC	5 cut(s)	68, 118, 214, 277, 615
BssNI	GRCGYC	1 cut(s)	14
Bst4CI	ACNGT	3 cut(s)	47, 262, 376
Bst6I	CTCTTC	1 cut(s)	477
BstACI	GRCGYC	1 cut(s)	14
BstC8I	GCNNGC	4 cut(s)	102, 225, 303, 353
BstDEI	CTNAG	3 cut(s)	32, 114, 311
BstF5I	GGATG	2 cut(s)	280, 439
BstKTI	GATC	5 cut(s)	71, 121, 217, 280, 618
BstMAI	GTCTC	1 cut(s)	272
BstMBI	GATC	5 cut(s)	68, 118, 214, 277, 615
BstMCI	CGRYCG	1 cut(s)	71
BstMWI	GCNNNNNNNGC	3 cut(s)	145, 503, 630
BstNSI	RCATGY	1 cut(s)	227
BstSCI	CCNGG	1 cut(s)	284
BstSLI	GKGCMC	1 cut(s)	186
BstV1I	GCAGC	2 cut(s)	214, 310
BstV2I	GAAGAC	1 cut(s)	14
BstX2I	RGATCY	2 cut(s)	214, 615
BstYI	RGATCY	2 cut(s)	214, 615
BsuRI	GGCC	1 cut(s)	318
BtsCI	GGATG	2 cut(s)	280, 439
BtsI	GCAGTG	2 cut(s)	240, 514
BtsIMutI	CAGTG	2 cut(s)	240, 514
Cac8I	GCNNGC	4 cut(s)	102, 225, 303, 353
CseI	GACGC	1 cut(s)	22
Csp6I	GTAC	2 cut(s)	43, 282
CviAII	CATG	5 cut(s)	53, 152, 224, 493, 534
CviQI	GTAC	2 cut(s)	43, 282
DdeI	CTNAG	3 cut(s)	32, 114, 311
DpnI	GATC	5 cut(s)	70, 120, 216, 279, 617
DpnII	GATC	5 cut(s)	68, 118, 214, 277, 615
Eam1104I	CTCTTC	1 cut(s)	477
EarI	CTCTTC	1 cut(s)	477
Ecl136II	GAGCTC	1 cut(s)	355
Eco24I	GRGCYC	1 cut(s)	357
Eco53kI	GAGCTC	1 cut(s)	355
EcoICRI	GAGCTC	1 cut(s)	355
EcoT38I	GRGCYC	1 cut(s)	357
Esp3I	CGTCTC	1 cut(s)	272
FaeI	CATG	5 cut(s)	56, 155, 227, 496, 537
FatI	CATG	5 cut(s)	52, 151, 223, 492, 533
FauNDI	CATATG	1 cut(s)	577
Fnu4HI	GCNGC	2 cut(s)	203, 299
FokI	GGATG	2 cut(s)	287, 446
FriOI	GRGCYC	1 cut(s)	357
Fsp4HI	GCNGC	2 cut(s)	203, 299
FspBI	CTAG	2 cut(s)	129, 302
GluI	GCNGC	2 cut(s)	203, 299
GsaI	CCCAGC	1 cut(s)	585
HaeIII	GGCC	1 cut(s)	318
HapII	CCGG	2 cut(s)	90, 285
HgaI	GACGC	1 cut(s)	22
Hin1I	GRCGYC	1 cut(s)	14
Hin1II	CATG	5 cut(s)	56, 155, 227, 496, 537
HincII	GTYRAC	1 cut(s)	547
HindII	GTYRAC	1 cut(s)	547
HinfI	GANTC	2 cut(s)	25, 553
HpaII	CCGG	2 cut(s)	90, 285
HphI	GGTGA	2 cut(s)	79, 380
Hpy166II	GTNNAC	1 cut(s)	547
Hpy188I	TCNGA	2 cut(s)	115, 123
Hpy188III	TCNNGA	2 cut(s)	22, 418
Hpy8I	GTNNAC	1 cut(s)	547
Hpy99I	CGWCG	1 cut(s)	16
HpyAV	CCTTC	4 cut(s)	52, 172, 580, 596
HpyCH4III	ACNGT	3 cut(s)	47, 262, 376
HpyCH4V	TGCA	5 cut(s)	298, 335, 519, 524, 575
HpyF10VI	GCNNNNNNNGC	3 cut(s)	145, 503, 630
HpyF3I	CTNAG	3 cut(s)	32, 114, 311
Hsp92I	GRCGYC	1 cut(s)	14
Hsp92II	CATG	5 cut(s)	56, 155, 227, 496, 537
Kzo9I	GATC	5 cut(s)	68, 118, 214, 277, 615
LmnI	GCTCC	1 cut(s)	199
Lsp1109I	GCAGC	2 cut(s)	214, 310
MaeI	CTAG	2 cut(s)	129, 302
MaeIII	GTNAC	2 cut(s)	161, 418
MalI	GATC	5 cut(s)	70, 120, 216, 279, 617
MboI	GATC	5 cut(s)	68, 118, 214, 277, 615
MboII	GAAGA	3 cut(s)	19, 464, 610
MfeI	CAATTG	1 cut(s)	525
MflI	RGATCY	2 cut(s)	214, 615
MhlI	GDGCHC	2 cut(s)	186, 357
MluCI	AATT	4 cut(s)	173, 384, 408, 525
MnlI	CCTC	6 cut(s)	55, 109, 115, 159, 256, 606
MseI	TTAA	1 cut(s)	327
MslI	CAYNNNNRTG	1 cut(s)	156
MspA1I	CMGCKG	2 cut(s)	205, 506
MspI	CCGG	2 cut(s)	90, 285
MspR9I	CCNGG	1 cut(s)	286
MunI	CAATTG	1 cut(s)	525
MwoI	GCNNNNNNNGC	3 cut(s)	145, 503, 630
NciI	CCSGG	1 cut(s)	286
NdeI	CATATG	1 cut(s)	577
NdeII	GATC	5 cut(s)	68, 118, 214, 277, 615
NheI	GCTAGC	1 cut(s)	301
NlaIII	CATG	5 cut(s)	56, 155, 227, 496, 537
NlaIV	GGNNCC	2 cut(s)	94, 216
NmeAIII	GCCGAG	1 cut(s)	253
NmuCI	GTSAC	1 cut(s)	418
NspI	RCATGY	1 cut(s)	227
PaeI	GCATGC	1 cut(s)	227
PfeI	GAWTC	2 cut(s)	25, 553
PkrI	GCNGC	2 cut(s)	204, 300
Ple19I	CGATCG	1 cut(s)	71
Psp124BI	GAGCTC	1 cut(s)	357
PspFI	CCCAGC	1 cut(s)	581
PspN4I	GGNNCC	2 cut(s)	94, 216
PsuI	RGATCY	2 cut(s)	214, 615
PvuI	CGATCG	1 cut(s)	71
PvuII	CAGCTG	2 cut(s)	205, 506
RsaI	GTAC	2 cut(s)	44, 283
RsaNI	GTAC	2 cut(s)	43, 282
RseI	CAYNNNNRTG	1 cut(s)	156
SacI	GAGCTC	1 cut(s)	357
SaqAI	TTAA	1 cut(s)	327
SatI	GCNGC	2 cut(s)	203, 299
Sau3AI	GATC	5 cut(s)	68, 118, 214, 277, 615
ScrFI	CCNGG	1 cut(s)	286
SduI	GDGCHC	2 cut(s)	186, 357
SetI	ASST	9 cut(s)	66, 102, 207, 303, 346, 357, 445, 508, 607
SmiMI	CAYNNNNRTG	1 cut(s)	156
SphI	GCATGC	1 cut(s)	227
Sse9I	AATT	4 cut(s)	173, 384, 408, 525
SsiI	CCGC	2 cut(s)	126, 305
SspMI	CTAG	2 cut(s)	129, 302
SstI	GAGCTC	1 cut(s)	357
StyD4I	CCNGG	1 cut(s)	284
TaaI	ACNGT	3 cut(s)	47, 262, 376
TasI	AATT	4 cut(s)	173, 384, 408, 525
TfiI	GAWTC	2 cut(s)	25, 553
Tru1I	TTAA	1 cut(s)	327
Tru9I	TTAA	1 cut(s)	327
TscAI	CASTG	2 cut(s)	247, 521
TseFI	GTSAC	1 cut(s)	418
TseI	GCWGC	2 cut(s)	202, 298
Tsp45I	GTSAC	1 cut(s)	418
TspDTI	ATGAA	2 cut(s)	396, 615
TspRI	CASTG	2 cut(s)	247, 521
XapI	RAATTY	1 cut(s)	408
XceI	RCATGY	1 cut(s)	227
XcmI	CCANNNNNNNNNTGG	1 cut(s)	247
XspI	CTAG	2 cut(s)	129, 302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.