Rmu_sc0003947.1_g000003

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003947.1
N/A
Physical Location & Seq
Reverse (-)
3693 .. 4016
324 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 324 bp
atgactagtcatatggatgattcactcctgtacgagtgtatgaatgaagaagaccctagaaggctatgggtctcactcaaagaaagatttggcaactttcgtgactccctgcttcctgacctagaagtgagatggcatagcctccgcttctgtgatttcaagtcagttcttgactacaactcggaagcactttgcattaaatccttaatgaagtttagtggtaaagtgatcacagatgcgatgttgattgagaagactctctctaccttccccgtctctgcattgatggttgctaagaagtatcgaattgatgttattgcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

107

Amino Acids

12.5

Weight (kDa)

6.09

Isoelectric Point (pI)

44.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 145
AfaI GTAC 1 cut(s) 32
AgsI TTSAA 1 cut(s) 160
AhlI ACTAGT 1 cut(s) 5
Alw26I GTCTC 2 cut(s) 76, 280
BbsI GAAGAC 2 cut(s) 57, 260
BccI CCATC 2 cut(s) 126, 280
BclI TGATCA 1 cut(s) 228
BcoDI GTCTC 2 cut(s) 76, 280
BcuI ACTAGT 1 cut(s) 5
BfaI CTAG 3 cut(s) 6, 57, 122
BmsI GCATC 1 cut(s) 226
BpiI GAAGAC 2 cut(s) 57, 260
BsaI GGTCTC 1 cut(s) 76
BseGI GGATG 1 cut(s) 22
BsmAI GTCTC 2 cut(s) 76, 280
BsmBI CGTCTC 1 cut(s) 280
Bso31I GGTCTC 1 cut(s) 76
Bsp143I GATC 1 cut(s) 228
BspACI CCGC 1 cut(s) 145
BspTNI GGTCTC 1 cut(s) 76
BssMI GATC 1 cut(s) 228
BstDEI CTNAG 1 cut(s) 294
BstF5I GGATG 1 cut(s) 22
BstKTI GATC 1 cut(s) 231
BstMAI GTCTC 2 cut(s) 76, 280
BstMBI GATC 1 cut(s) 228
BstV2I GAAGAC 2 cut(s) 57, 260
BtgZI GCGATG 1 cut(s) 254
BtsCI GGATG 1 cut(s) 22
Csp6I GTAC 1 cut(s) 31
CviAII CATG 1 cut(s) 321
CviJI RGCY 2 cut(s) 64, 141
CviKI_1 RGCY 2 cut(s) 64, 141
CviQI GTAC 1 cut(s) 31
DdeI CTNAG 1 cut(s) 294
DpnI GATC 1 cut(s) 230
DpnII GATC 1 cut(s) 228
Eco31I GGTCTC 1 cut(s) 76
Esp3I CGTCTC 1 cut(s) 280
FaeI CATG 1 cut(s) 324
FaiI YATR 6 cut(s) 12, 14, 41, 67, 138, 322
FatI CATG 1 cut(s) 320
FauNDI CATATG 1 cut(s) 12
FbaI TGATCA 1 cut(s) 228
FokI GGATG 1 cut(s) 29
FspBI CTAG 3 cut(s) 6, 57, 122
Hin1II CATG 1 cut(s) 324
HinfI GANTC 3 cut(s) 20, 104, 256
Hpy188I TCNGA 1 cut(s) 184
Hpy188III TCNNGA 3 cut(s) 101, 116, 170
HpyAV CCTTC 2 cut(s) 54, 277
HpyCH4V TGCA 3 cut(s) 195, 281, 320
HpyF3I CTNAG 1 cut(s) 294
Hsp92II CATG 1 cut(s) 324
Ksp22I TGATCA 1 cut(s) 228
Kzo9I GATC 1 cut(s) 228
LpnPI CCDG 3 cut(s) 41, 122, 129
LweI GCATC 1 cut(s) 226
MaeI CTAG 3 cut(s) 6, 57, 122
MaeIII GTNAC 1 cut(s) 101
MalI GATC 1 cut(s) 230
MboI GATC 1 cut(s) 228
MboII GAAGA 3 cut(s) 59, 62, 265
MluCI AATT 1 cut(s) 306
MlyI GAGTC 2 cut(s) 98, 250
MnlI CCTC 1 cut(s) 152
MseI TTAA 2 cut(s) 198, 206
MslI CAYNNNNRTG 1 cut(s) 15
NdeI CATATG 1 cut(s) 12
NdeII GATC 1 cut(s) 228
NlaIII CATG 1 cut(s) 324
NmuCI GTSAC 1 cut(s) 101
PfeI GAWTC 1 cut(s) 20
PleI GAGTC 2 cut(s) 98, 250
PpsI GAGTC 2 cut(s) 98, 250
RsaI GTAC 1 cut(s) 32
RsaNI GTAC 1 cut(s) 31
RseI CAYNNNNRTG 1 cut(s) 15
SaqAI TTAA 2 cut(s) 198, 206
Sau3AI GATC 1 cut(s) 228
SchI GAGTC 2 cut(s) 98, 250
SetI ASST 2 cut(s) 123, 269
SfaNI GCATC 1 cut(s) 226
SmiMI CAYNNNNRTG 1 cut(s) 15
SpeI ACTAGT 1 cut(s) 5
Sse9I AATT 1 cut(s) 306
SsiI CCGC 1 cut(s) 145
SspMI CTAG 3 cut(s) 6, 57, 122
TaqI TCGA 1 cut(s) 304
TasI AATT 1 cut(s) 306
TfiI GAWTC 1 cut(s) 20
Tru1I TTAA 2 cut(s) 198, 206
Tru9I TTAA 2 cut(s) 198, 206
TseFI GTSAC 1 cut(s) 101
Tsp45I GTSAC 1 cut(s) 101
TspDTI ATGAA 3 cut(s) 56, 60, 224
XspI CTAG 3 cut(s) 6, 57, 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.