Rmu_sc0003959.1_g000002

Belongs to the syntaxin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003959.1
N/A
Physical Location & Seq
Forward (+)
4667 .. 5230
564 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 564 bp
atgaacgacttgttatcccccaactccttctcccagggctcgccggaccaccatgtcatcgagatgaccccctccgatgcctccagcgacctcaagaagttcttcgaggacgtcgacttgatccagaccgagctcaatgacttgcagaagctcaacaccagcctcaggagcgcacacgagcagagcaagaccctccacaaggccaaggaagtcaaggacctccggacacggatggacgctgacgttaaccatgcccttaaggccgtcaagctccttaaggttcggttggaggcactggaccggtccaacgcctccagcaggagcttgcctgggtgcggtccggggtcgtcctcggaccggacgaggacgtctgtggtgagtgggttgaggaagaagctaaaggattctatggagagctttaatgacttgagacagaagatttcctccgagtacaaggagaccgttcagagaaggtactttacggtgaccggagagaaaccggacgacaaaaccattgaccttctcatatctactggtaagataactttttcgatgtataattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000149 GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0005911 GO:0006605 GO:0006612 GO:0006810 GO:0006833 GO:0006886 GO:0006887 GO:0006906 GO:0006950 GO:0006952 GO:0006996 GO:0008104 GO:0008150 GO:0009504 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010119 GO:0010148 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0030054 GO:0031201 GO:0031224 GO:0031347 GO:0031348 GO:0031984 GO:0032507 GO:0032940 GO:0032991 GO:0033036 GO:0033993 GO:0034613 GO:0042044 GO:0042221 GO:0042886 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043495 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045185 GO:0046903 GO:0046907 GO:0048278 GO:0048284 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051640 GO:0051641 GO:0051649 GO:0051651 GO:0051704 GO:0051707 GO:0055044 GO:0061024 GO:0061025 GO:0065007 GO:0065008 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072657 GO:0072658 GO:0072659 GO:0072660 GO:0080134 GO:0090150 GO:0090174 GO:0097305 GO:0098542 GO:0098791 GO:0098796 GO:0140056 GO:1901700 GO:1990778
KEGG Pathways
Metabolic & Signaling
ko04130 ko04721 map04130 map04721
Pfam Domains
Protein Families
SNARE Syntaxin

Protein Analysis

187

Amino Acids

21.03

Weight (kDa)

8.91

Isoelectric Point (pI)

42.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Syntaxin PF00804 29 - 183 5.5e-49 Syntaxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 53, 367
AatII GACGTC 2 cut(s) 114, 371
AccI GTMKAC 1 cut(s) 114
AccIII TCCGGA 1 cut(s) 222
AciI CCGC 1 cut(s) 336
AclWI GGATC 1 cut(s) 115
AcyI GRCGYC 2 cut(s) 111, 368
AfaI GTAC 2 cut(s) 452, 476
AfiI CCNNNNNNNGG 5 cut(s) 165, 199, 318, 335, 357
AflII CTTAAG 2 cut(s) 257, 275
AgeI ACCGGT 1 cut(s) 300
AjnI CCWGG 2 cut(s) 33, 328
AluBI AGCT 6 cut(s) 133, 151, 271, 324, 397, 417
AluI AGCT 6 cut(s) 133, 151, 271, 324, 397, 417
Alw21I GWGCWC 1 cut(s) 135
Alw26I GTCTC 2 cut(s) 424, 452
AlwI GGATC 1 cut(s) 115
Aor13HI TCCGGA 1 cut(s) 222
AoxI GGCC 2 cut(s) 201, 261
AsiGI ACCGGT 1 cut(s) 300
Asp700I GAANNNNTTC 1 cut(s) 101
AspLEI GCGC 1 cut(s) 173
AspS9I GGNCC 6 cut(s) 46, 217, 298, 303, 338, 355
AsuC2I CCSGG 1 cut(s) 342
AsuHPI GGTGA 2 cut(s) 388, 496
AvaII GGWCC 6 cut(s) 46, 217, 298, 303, 338, 355
AxyI CCTNAGG 1 cut(s) 164
BanII GRGCYC 2 cut(s) 41, 135
BarI GAAGNNNNNNTAC 2 cut(s) 463, 495
BauI CACGAG 1 cut(s) 176
Bbv12I GWGCWC 1 cut(s) 135
BccI CCATC 1 cut(s) 226
BceAI ACGGC 1 cut(s) 248
BciT130I CCWGG 2 cut(s) 35, 330
BcnI CCSGG 1 cut(s) 342
BcoDI GTCTC 2 cut(s) 424, 452
BfrI CTTAAG 2 cut(s) 257, 275
BglI GCCNNNNNGGC 1 cut(s) 260
Bme1390I CCNGG 3 cut(s) 35, 330, 342
Bme18I GGWCC 6 cut(s) 46, 217, 298, 303, 338, 355
BmgT120I GGNCC 6 cut(s) 46, 217, 298, 303, 338, 355
BmrFI CCNGG 3 cut(s) 35, 330, 342
BmsI GCATC 1 cut(s) 67
BpmI CTGGAG 2 cut(s) 67, 298
BpuEI CTTGAG 2 cut(s) 77, 448
BpuMI CCSGG 1 cut(s) 342
BsaHI GRCGYC 2 cut(s) 111, 368
BsaI GGTCTC 1 cut(s) 452
BsaJI CCNNGG 6 cut(s) 33, 34, 204, 329, 341, 351
BsaWI WCCGGW 5 cut(s) 222, 300, 357, 488, 499
BsaXI ACNNNNNCTCC 2 cut(s) 14, 44
Bsc4I CCNNNNNNNGG 5 cut(s) 165, 199, 318, 335, 357
Bse118I RCCGGY 1 cut(s) 300
Bse1I ACTGG 2 cut(s) 300, 538
Bse21I CCTNAGG 1 cut(s) 164
BseAI TCCGGA 1 cut(s) 222
BseBI CCWGG 2 cut(s) 35, 330
BseDI CCNNGG 6 cut(s) 33, 34, 204, 329, 341, 351
BseGI GGATG 1 cut(s) 237
BseLI CCNNNNNNNGG 5 cut(s) 165, 199, 318, 335, 357
BseMII CTCAG 1 cut(s) 178
BseNI ACTGG 2 cut(s) 300, 538
BshFI GGCC 2 cut(s) 203, 263
BshTI ACCGGT 1 cut(s) 300
BsiHKAI GWGCWC 1 cut(s) 135
BsiSI CCGG 7 cut(s) 44, 223, 301, 341, 358, 489, 500
BslI CCNNNNNNNGG 5 cut(s) 165, 199, 318, 335, 357
BsmAI GTCTC 2 cut(s) 424, 452
BsnI GGCC 2 cut(s) 203, 263
Bso31I GGTCTC 1 cut(s) 452
Bsp1286I GDGCHC 2 cut(s) 41, 135
Bsp13I TCCGGA 1 cut(s) 222
Bsp143I GATC 1 cut(s) 120
BspACI CCGC 1 cut(s) 336
BspANI GGCC 2 cut(s) 203, 263
BspCNI CTCAG 1 cut(s) 177
BspEI TCCGGA 1 cut(s) 222
BspPI GGATC 1 cut(s) 115
BspTI CTTAAG 2 cut(s) 257, 275
BspTNI GGTCTC 1 cut(s) 452
BsrFI RCCGGY 1 cut(s) 300
BsrI ACTGG 2 cut(s) 300, 538
BssAI RCCGGY 1 cut(s) 300
BssECI CCNNGG 6 cut(s) 33, 34, 204, 329, 341, 351
BssMI GATC 1 cut(s) 120
BssNI GRCGYC 2 cut(s) 111, 368
BssSI CACGAG 1 cut(s) 176
BssT1I CCWWGG 1 cut(s) 204
Bst2BI CACGAG 1 cut(s) 176
Bst2UI CCWGG 2 cut(s) 35, 330
Bst4CI ACNGT 2 cut(s) 463, 484
BstACI GRCGYC 2 cut(s) 111, 368
BstAFI CTTAAG 2 cut(s) 257, 275
BstC8I GCNNGC 2 cut(s) 41, 326
BstDEI CTNAG 1 cut(s) 164
BstEII GGTNACC 1 cut(s) 484
BstENI CCTNNNNNAGG 2 cut(s) 197, 316
BstF5I GGATG 1 cut(s) 237
BstHHI GCGC 1 cut(s) 173
BstKTI GATC 1 cut(s) 123
BstMAI GTCTC 2 cut(s) 424, 452
BstMBI GATC 1 cut(s) 120
BstMWI GCNNNNNNNGC 2 cut(s) 168, 260
BstNI CCWGG 2 cut(s) 35, 330
BstPI GGTNACC 1 cut(s) 484
BstSCI CCNGG 3 cut(s) 33, 328, 340
Bsu36I CCTNAGG 1 cut(s) 164
BsuRI GGCC 2 cut(s) 203, 263
BtsCI GGATG 1 cut(s) 237
BtsIMutI CAGTG 1 cut(s) 293
Cac8I GCNNGC 2 cut(s) 41, 326
CfoI GCGC 1 cut(s) 173
Cfr10I RCCGGY 1 cut(s) 300
Cfr13I GGNCC 6 cut(s) 46, 217, 298, 303, 338, 355
CpoI CGGWCCG 2 cut(s) 338, 355
CseI GACGC 1 cut(s) 245
Csp6I GTAC 2 cut(s) 451, 475
CspAI ACCGGT 1 cut(s) 300
CspI CGGWCCG 2 cut(s) 338, 355
CviAII CATG 2 cut(s) 53, 251
CviQI GTAC 2 cut(s) 451, 475
DdeI CTNAG 1 cut(s) 164
DpnI GATC 1 cut(s) 122
DpnII GATC 1 cut(s) 120
DrdI GACNNNNNNGTC 2 cut(s) 53, 367
DseDI GACNNNNNNGTC 2 cut(s) 53, 367
Ecl136II GAGCTC 1 cut(s) 133
Eco130I CCWWGG 1 cut(s) 204
Eco24I GRGCYC 2 cut(s) 41, 135
Eco31I GGTCTC 1 cut(s) 452
Eco47I GGWCC 6 cut(s) 46, 217, 298, 303, 338, 355
Eco53kI GAGCTC 1 cut(s) 133
Eco81I CCTNAGG 1 cut(s) 164
Eco91I GGTNACC 1 cut(s) 484
EcoICRI GAGCTC 1 cut(s) 133
EcoNI CCTNNNNNAGG 2 cut(s) 197, 316
EcoO109I RGGNCCY 1 cut(s) 217
EcoO65I GGTNACC 1 cut(s) 484
EcoRII CCWGG 2 cut(s) 33, 328
EcoT14I CCWWGG 1 cut(s) 204
EcoT38I GRGCYC 2 cut(s) 41, 135
ErhI CCWWGG 1 cut(s) 204
FaeI CATG 2 cut(s) 56, 254
FaiI YATR 5 cut(s) 54, 252, 410, 527, 558
FalI AAGNNNNNCTT 2 cut(s) 86, 118
FatI CATG 2 cut(s) 52, 250
FblI GTMKAC 1 cut(s) 114
FokI GGATG 1 cut(s) 244
FriOI GRGCYC 2 cut(s) 41, 135
GlaI GCGC 1 cut(s) 172
GsuI CTGGAG 2 cut(s) 67, 298
HaeIII GGCC 2 cut(s) 203, 263
HapII CCGG 7 cut(s) 44, 223, 301, 341, 358, 489, 500
HgaI GACGC 1 cut(s) 245
HhaI GCGC 1 cut(s) 173
Hin1I GRCGYC 2 cut(s) 111, 368
Hin1II CATG 2 cut(s) 56, 254
Hin6I GCGC 1 cut(s) 171
HinP1I GCGC 1 cut(s) 171
HincII GTYRAC 2 cut(s) 115, 247
HindII GTYRAC 2 cut(s) 115, 247
HinfI GANTC 1 cut(s) 404
HpaI GTTAAC 1 cut(s) 247
HpaII CCGG 7 cut(s) 44, 223, 301, 341, 358, 489, 500
HphI GGTGA 2 cut(s) 388, 496
Hpy166II GTNNAC 2 cut(s) 115, 247
Hpy188I TCNGA 4 cut(s) 76, 355, 448, 468
Hpy188III TCNNGA 5 cut(s) 61, 94, 124, 166, 223
Hpy8I GTNNAC 2 cut(s) 115, 247
Hpy99I CGWCG 1 cut(s) 116
HpyAV CCTTC 3 cut(s) 37, 465, 530
HpyCH4III ACNGT 2 cut(s) 463, 484
HpyCH4IV ACGT 3 cut(s) 111, 243, 368
HpyCH4V TGCA 1 cut(s) 145
HpyF10VI GCNNNNNNNGC 2 cut(s) 168, 260
HpyF3I CTNAG 1 cut(s) 164
HpySE526I ACGT 3 cut(s) 111, 243, 368
Hsp92I GRCGYC 2 cut(s) 111, 368
Hsp92II CATG 2 cut(s) 56, 254
HspAI GCGC 1 cut(s) 171
Kpn2I TCCGGA 1 cut(s) 222
KspAI GTTAAC 1 cut(s) 247
Kzo9I GATC 1 cut(s) 120
LmnI GCTCC 3 cut(s) 168, 276, 321
LweI GCATC 1 cut(s) 67
MaeII ACGT 3 cut(s) 111, 243, 368
MaeIII GTNAC 1 cut(s) 484
MalI GATC 1 cut(s) 122
MboI GATC 1 cut(s) 120
MboII GAAGA 3 cut(s) 94, 403, 448
MhlI GDGCHC 2 cut(s) 41, 135
MluCI AATT 1 cut(s) 559
MmeI TCCRAC 2 cut(s) 267, 330
MroI TCCGGA 1 cut(s) 222
MroXI GAANNNNTTC 1 cut(s) 101
MseI TTAA 5 cut(s) 246, 258, 276, 420, 562
MslI CAYNNNNRTG 1 cut(s) 62
MspCI CTTAAG 2 cut(s) 257, 275
MspI CCGG 7 cut(s) 44, 223, 301, 341, 358, 489, 500
MspR9I CCNGG 3 cut(s) 35, 330, 342
MvaI CCWGG 2 cut(s) 35, 330
MwoI GCNNNNNNNGC 2 cut(s) 168, 260
NciI CCSGG 1 cut(s) 342
NdeII GATC 1 cut(s) 120
NlaIII CATG 2 cut(s) 56, 254
NmuCI GTSAC 1 cut(s) 484
PasI CCCWGGG 1 cut(s) 34
PcsI WCGNNNNNNNCGW 2 cut(s) 111, 359
PdmI GAANNNNTTC 1 cut(s) 101
PfeI GAWTC 1 cut(s) 404
PinAI ACCGGT 1 cut(s) 300
PpuMI RGGWCCY 1 cut(s) 217
Psp124BI GAGCTC 1 cut(s) 135
Psp5II RGGWCCY 1 cut(s) 217
Psp6I CCWGG 2 cut(s) 33, 328
PspEI GGTNACC 1 cut(s) 484
PspGI CCWGG 2 cut(s) 33, 328
PspPI GGNCC 6 cut(s) 46, 217, 298, 303, 338, 355
PspPPI RGGWCCY 1 cut(s) 217
RsaI GTAC 2 cut(s) 452, 476
RsaNI GTAC 2 cut(s) 451, 475
RseI CAYNNNNRTG 1 cut(s) 62
Rsr2I CGGWCCG 2 cut(s) 338, 355
RsrII CGGWCCG 2 cut(s) 338, 355
SacI GAGCTC 1 cut(s) 135
SalI GTCGAC 1 cut(s) 113
SaqAI TTAA 5 cut(s) 246, 258, 276, 420, 562
Sau3AI GATC 1 cut(s) 120
Sau96I GGNCC 6 cut(s) 46, 217, 298, 303, 338, 355
ScrFI CCNGG 3 cut(s) 35, 330, 342
SduI GDGCHC 2 cut(s) 41, 135
SfaNI GCATC 1 cut(s) 67
SinI GGWCC 6 cut(s) 46, 217, 298, 303, 338, 355
SmiMI CAYNNNNRTG 1 cut(s) 62
SmlI CTYRAG 4 cut(s) 92, 257, 275, 427
SmoI CTYRAG 4 cut(s) 92, 257, 275, 427
Sse9I AATT 1 cut(s) 559
SsiI CCGC 1 cut(s) 336
SstI GAGCTC 1 cut(s) 135
StyD4I CCNGG 3 cut(s) 33, 328, 340
StyI CCWWGG 1 cut(s) 204
TaaI ACNGT 2 cut(s) 463, 484
TaiI ACGT 3 cut(s) 114, 246, 371
TaqI TCGA 4 cut(s) 60, 105, 114, 551
TaqII GACCGA 1 cut(s) 143
TasI AATT 1 cut(s) 559
TatI WGTACW 1 cut(s) 450
TfiI GAWTC 1 cut(s) 404
Tru1I TTAA 5 cut(s) 246, 258, 276, 420, 562
Tru9I TTAA 5 cut(s) 246, 258, 276, 420, 562
TscAI CASTG 1 cut(s) 300
TseFI GTSAC 1 cut(s) 484
Tsp45I GTSAC 1 cut(s) 484
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 244
TspRI CASTG 1 cut(s) 300
Vha464I CTTAAG 2 cut(s) 257, 275
VpaK11BI GGWCC 6 cut(s) 46, 217, 298, 303, 338, 355
XagI CCTNNNNNAGG 2 cut(s) 197, 316
XmiI GTMKAC 1 cut(s) 114
XmnI GAANNNNTTC 1 cut(s) 101
ZraI GACGTC 2 cut(s) 112, 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.