Rmu_sc0003972.1_g000012

phosphatase 2c

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003972.1
N/A
Physical Location & Seq
Forward (+)
47150 .. 50568
3419 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1578 bp
atgttcgttttgatttgcgctgtgacagagtgctccgacggtagcgtcgtcttccgatttggcgacgagagcgagaaggctgcttttgatgagattaatagtcgtctggaggatgcggagttgagtgaaggattggttggcgaaagcaatgtggaagaatcggagattgatgcttctccggcgagttcacctgaggagactgccttccttgatttgacctcagcagatgaagtccaaagctcagcagtgttaggtgacagctccccttccaccaattcacaagatgtattcacagaggctgaatcacatagcagggatgtttcaggagcatcagctcctaggaaattggaattccatacacttgaaggctcagagaggtatccggccactatttcagaagatgaattcatagagggtgaagcacatagaagaggtgtcacaggagcatcaactcctatgccagtggaattgcatgcatctgaaggctctgaggggtatccttctgcaaagtcagaagatgaattaacagagggtaaagaagatacaacatatgtcataggagcatcaactcctgcgctagaggaattgcatacatctgaaggctctgagggttatccttctacaaagtcagaagatgaattaacagaggctaaagaagatagaagagatgtcacaggagcatcaactcatacgacagtggaattgcatacatctgaaggctctgaggggtatccatccacagaatcagaagatgaagtaacagagggcaaagaacatagaagagatgtcacaggagcatcaactcctatgccagtggaattgcatgcatttgaaggctctgaggggtatcattctacaaagtcagaagaggaatcaacagagggtaaagaagatagaacaccaactcctaggatggttatattgcatactgttgaaggctctgcgggatatccctccacaaagtcagaagatgaattgacagaggggaaagcccatcaaagagatgtctcagtaacatcaactgataggacagaggatatgcatactgttgaaggtgctgaggagaatgcttccataaattcagaggatgaatttgcagatgataaaacacatagaagagatgcttcaggagaattaatgccaaggatattggaatttcattcagttgaaggcgctttagggtatcctttaacaaaatcagaagatggatcaacagggggtaaagaacaaagagatgtttcaggagcatcaactcctagaacagtggaattgcttacagttgaaggtgctaaggggtatgcttccacaaagttagaagataaatttgcagagggtaaactagatagaacagatgttttagaagcagcaactcccaggacagtggaattgcaaacagttgaacgtgctaaggataccccttcaaaaaagtcagaagatgaattcacagagggtaaagcacatataagaaatgtttcgggagcatcaactcctaggatagtggaattgcatacagttgaaggcgctgaagggtatgctagtttttctcttgattctttcctatatataattgcaatatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C SpoIIE

Protein Analysis

525

Amino Acids

56.62

Weight (kDa)

4.41

Isoelectric Point (pI)

47.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 44
AciI CCGC 2 cut(s) 116, 944
AclWI GGATC 1 cut(s) 1216
AcoI YGGCCR 1 cut(s) 384
AcsI RAATTY 7 cut(s) 350, 404, 1078, 1091, 1154, 1322, 1439
AcuI CTGAAG 5 cut(s) 501, 618, 735, 1110, 1545
AgsI TTSAA 9 cut(s) 365, 833, 935, 1052, 1169, 1283, 1400, 1422, 1517
AjnI CCWGG 1 cut(s) 1373
AjuI GAANNNNNNNTTGG 2 cut(s) 120, 152
AloI GAACNNNNNNTCC 2 cut(s) 889, 921
AluBI AGCT 3 cut(s) 240, 261, 335
AluI AGCT 3 cut(s) 240, 261, 335
Alw21I GWGCWC 1 cut(s) 35
Alw26I GTCTC 2 cut(s) 191, 1012
AlwI GGATC 1 cut(s) 1216
AlwNI CAGNNNCTG 1 cut(s) 299
AoxI GGCC 1 cut(s) 384
ApeKI GCWGC 2 cut(s) 80, 1364
ApoI RAATTY 7 cut(s) 350, 404, 1078, 1091, 1154, 1322, 1439
AseI ATTAAT 2 cut(s) 96, 1136
Asp700I GAANNNNTTC 1 cut(s) 1471
AspA2I CCTAGG 3 cut(s) 338, 908, 1490
AspLEI GCGC 4 cut(s) 20, 577, 1175, 1523
AsuHPI GGTGA 3 cut(s) 180, 266, 428
AvrII CCTAGG 3 cut(s) 338, 908, 1490
AxyI CCTNAGG 1 cut(s) 192
BbsI GAAGAC 1 cut(s) 43
Bbv12I GWGCWC 1 cut(s) 35
BbvCI CCTCAGC 2 cut(s) 220, 1059
BbvI GCAGC 2 cut(s) 67, 1376
BccI CCATC 4 cut(s) 742, 907, 1002, 1199
BcgI CGANNNNNNTGC 2 cut(s) 62, 96
BciT130I CCWGG 1 cut(s) 1375
BciVI GTATCC 5 cut(s) 390, 507, 741, 1194, 1405
BcoDI GTCTC 2 cut(s) 191, 1012
BfaI CTAG 7 cut(s) 339, 578, 909, 1257, 1340, 1491, 1536
BfoI RGCGCY 2 cut(s) 1176, 1524
BfuI GTATCC 5 cut(s) 390, 507, 741, 1194, 1405
BisI GCNGC 2 cut(s) 81, 1365
BlnI CCTAGG 3 cut(s) 338, 908, 1490
BlpI GCTNAGC 1 cut(s) 241
BlsI GCNGC 2 cut(s) 82, 1366
Bme1390I CCNGG 1 cut(s) 1375
BmrFI CCNGG 1 cut(s) 1375
BpiI GAAGAC 1 cut(s) 43
BpmI CTGGAG 1 cut(s) 128
Bpu10I CCTNAGC 4 cut(s) 220, 1059, 1290, 1407
Bpu1102I GCTNAGC 1 cut(s) 241
BsaJI CCNNGG 5 cut(s) 338, 908, 1142, 1373, 1490
BsaXI ACNNNNNCTCC 2 cut(s) 889, 919
Bse1I ACTGG 2 cut(s) 461, 812
Bse21I CCTNAGG 1 cut(s) 192
Bse3DI GCAATG 1 cut(s) 154
BseBI CCWGG 1 cut(s) 1375
BseDI CCNNGG 5 cut(s) 338, 908, 1142, 1373, 1490
BseGI GGATG 5 cut(s) 118, 322, 734, 918, 1093
BseMI GCAATG 1 cut(s) 154
BseNI ACTGG 2 cut(s) 461, 812
BseRI GAGGAG 2 cut(s) 209, 1076
BseXI GCAGC 2 cut(s) 67, 1376
BshFI GGCC 1 cut(s) 386
BsiHKAI GWGCWC 1 cut(s) 35
BsiSI CCGG 2 cut(s) 179, 383
BsmAI GTCTC 2 cut(s) 191, 1012
BsmI GAATGC 1 cut(s) 1072
BsnI GGCC 1 cut(s) 386
Bsp1286I GDGCHC 1 cut(s) 35
Bsp143I GATC 1 cut(s) 1208
Bsp1720I GCTNAGC 1 cut(s) 241
BspACI CCGC 2 cut(s) 116, 944
BspANI GGCC 1 cut(s) 386
BspPI GGATC 1 cut(s) 1216
BsrDI GCAATG 1 cut(s) 154
BsrI ACTGG 2 cut(s) 461, 812
BssECI CCNNGG 5 cut(s) 338, 908, 1142, 1373, 1490
BssMI GATC 1 cut(s) 1208
BssT1I CCWWGG 4 cut(s) 338, 908, 1142, 1490
Bst2UI CCWGG 1 cut(s) 1375
Bst4CI ACNGT 9 cut(s) 41, 697, 931, 1048, 1264, 1279, 1381, 1396, 1513
Bst6I CTCTTC 5 cut(s) 424, 658, 775, 861, 1111
BstC8I GCNNGC 2 cut(s) 474, 825
BstF5I GGATG 5 cut(s) 118, 322, 734, 918, 1093
BstH2I RGCGCY 2 cut(s) 1176, 1524
BstHHI GCGC 4 cut(s) 20, 577, 1175, 1523
BstKTI GATC 1 cut(s) 1211
BstMAI GTCTC 2 cut(s) 191, 1012
BstMBI GATC 1 cut(s) 1208
BstMWI GCNNNNNNNGC 2 cut(s) 69, 179
BstNI CCWGG 1 cut(s) 1375
BstNSI RCATGY 2 cut(s) 476, 827
BstSCI CCNGG 1 cut(s) 1373
BstV1I GCAGC 2 cut(s) 67, 1376
BstV2I GAAGAC 1 cut(s) 43
BstXI CCANNNNNNTGG 1 cut(s) 1381
Bsu36I CCTNAGG 1 cut(s) 192
BsuI GTATCC 5 cut(s) 390, 507, 741, 1194, 1405
BsuRI GGCC 1 cut(s) 386
BtsCI GGATG 5 cut(s) 118, 322, 734, 918, 1093
BtsI GCAGTG 1 cut(s) 252
BtsIMutI CAGTG 6 cut(s) 252, 468, 702, 819, 1269, 1386
Cac8I GCNNGC 2 cut(s) 474, 825
CaiI CAGNNNCTG 1 cut(s) 299
CfoI GCGC 4 cut(s) 20, 577, 1175, 1523
CseI GACGC 1 cut(s) 34
CviAII CATG 2 cut(s) 473, 824
DpnI GATC 1 cut(s) 1210
DpnII GATC 1 cut(s) 1208
DrdI GACNNNNNNGTC 1 cut(s) 44
DseDI GACNNNNNNGTC 1 cut(s) 44
EaeI YGGCCR 1 cut(s) 384
Eam1104I CTCTTC 5 cut(s) 424, 658, 775, 861, 1111
EarI CTCTTC 5 cut(s) 424, 658, 775, 861, 1111
Eco130I CCWWGG 4 cut(s) 338, 908, 1142, 1490
Eco32I GATATC 1 cut(s) 950
Eco57I CTGAAG 5 cut(s) 501, 618, 735, 1110, 1545
Eco81I CCTNAGG 1 cut(s) 192
EcoRI GAATTC 3 cut(s) 350, 404, 1439
EcoRII CCWGG 1 cut(s) 1373
EcoRV GATATC 1 cut(s) 950
EcoT14I CCWWGG 4 cut(s) 338, 908, 1142, 1490
EcoT22I ATGCAT 3 cut(s) 478, 829, 1044
ErhI CCWWGG 4 cut(s) 338, 908, 1142, 1490
FaeI CATG 2 cut(s) 476, 827
FalI AAGNNNNNCTT 2 cut(s) 1108, 1140
FatI CATG 2 cut(s) 472, 823
FauI CCCGC 1 cut(s) 937
FauNDI CATATG 1 cut(s) 550
Fnu4HI GCNGC 2 cut(s) 81, 1365
FokI GGATG 5 cut(s) 125, 329, 721, 925, 1100
Fsp4HI GCNGC 2 cut(s) 81, 1365
FspBI CTAG 7 cut(s) 339, 578, 909, 1257, 1340, 1491, 1536
GlaI GCGC 4 cut(s) 19, 576, 1174, 1522
GluI GCNGC 2 cut(s) 81, 1365
GsuI CTGGAG 1 cut(s) 128
HaeII RGCGCY 2 cut(s) 1176, 1524
HaeIII GGCC 1 cut(s) 386
HapII CCGG 2 cut(s) 179, 383
HgaI GACGC 1 cut(s) 34
HhaI GCGC 4 cut(s) 20, 577, 1175, 1523
Hin1II CATG 2 cut(s) 476, 827
Hin6I GCGC 4 cut(s) 18, 575, 1173, 1521
HinP1I GCGC 4 cut(s) 18, 575, 1173, 1521
HinfI GANTC 5 cut(s) 158, 302, 743, 872, 1550
HpaII CCGG 2 cut(s) 179, 383
HphI GGTGA 3 cut(s) 180, 266, 428
Hpy166II GTNNAC 2 cut(s) 188, 1337
Hpy188III TCNNGA 6 cut(s) 107, 324, 1128, 1242, 1476, 1547
Hpy8I GTNNAC 2 cut(s) 188, 1337
Hpy99I CGWCG 3 cut(s) 41, 50, 68
HpyCH4III ACNGT 9 cut(s) 41, 697, 931, 1048, 1264, 1279, 1381, 1396, 1513
HpyCH4IV ACGT 1 cut(s) 1402
HpyF10VI GCNNNNNNNGC 2 cut(s) 69, 179
HpySE526I ACGT 1 cut(s) 1402
Hsp92II CATG 2 cut(s) 476, 827
HspAI GCGC 4 cut(s) 18, 575, 1173, 1521
Kzo9I GATC 1 cut(s) 1208
Lsp1109I GCAGC 2 cut(s) 67, 1376
MaeI CTAG 7 cut(s) 339, 578, 909, 1257, 1340, 1491, 1536
MaeII ACGT 1 cut(s) 1402
MaeIII GTNAC 7 cut(s) 22, 254, 436, 670, 757, 787, 1012
MalI GATC 1 cut(s) 1210
MboI GATC 1 cut(s) 1208
MhlI GDGCHC 1 cut(s) 35
MmeI TCCRAC 1 cut(s) 60
Mph1103I ATGCAT 3 cut(s) 478, 829, 1044
MroXI GAANNNNTTC 1 cut(s) 1471
MseI TTAA 5 cut(s) 96, 524, 641, 1136, 1190
MspI CCGG 2 cut(s) 179, 383
MspR9I CCNGG 1 cut(s) 1375
Mva1269I GAATGC 1 cut(s) 1072
MvaI CCWGG 1 cut(s) 1375
MwoI GCNNNNNNNGC 2 cut(s) 69, 179
NdeI CATATG 1 cut(s) 550
NdeII GATC 1 cut(s) 1208
NlaIII CATG 2 cut(s) 476, 827
NmuCI GTSAC 5 cut(s) 22, 254, 436, 670, 787
NsiI ATGCAT 3 cut(s) 478, 829, 1044
NspI RCATGY 2 cut(s) 476, 827
PaeI GCATGC 2 cut(s) 476, 827
PcsI WCGNNNNNNNCGW 1 cut(s) 45
PctI GAATGC 1 cut(s) 1072
PdmI GAANNNNTTC 1 cut(s) 1471
PfeI GAWTC 5 cut(s) 158, 302, 743, 872, 1550
PkrI GCNGC 2 cut(s) 82, 1366
PshBI ATTAAT 2 cut(s) 96, 1136
Psp6I CCWGG 1 cut(s) 1373
PspGI CCWGG 1 cut(s) 1373
PstNI CAGNNNCTG 1 cut(s) 299
SaqAI TTAA 5 cut(s) 96, 524, 641, 1136, 1190
SatI GCNGC 2 cut(s) 81, 1365
Sau3AI GATC 1 cut(s) 1208
ScrFI CCNGG 1 cut(s) 1375
SduI GDGCHC 1 cut(s) 35
SphI GCATGC 2 cut(s) 476, 827
SsiI CCGC 2 cut(s) 116, 944
SspMI CTAG 7 cut(s) 339, 578, 909, 1257, 1340, 1491, 1536
StyD4I CCNGG 1 cut(s) 1373
StyI CCWWGG 4 cut(s) 338, 908, 1142, 1490
TaaI ACNGT 9 cut(s) 41, 697, 931, 1048, 1264, 1279, 1381, 1396, 1513
TaiI ACGT 1 cut(s) 1405
TfiI GAWTC 5 cut(s) 158, 302, 743, 872, 1550
Tru1I TTAA 5 cut(s) 96, 524, 641, 1136, 1190
Tru9I TTAA 5 cut(s) 96, 524, 641, 1136, 1190
TscAI CASTG 6 cut(s) 252, 468, 702, 819, 1269, 1386
TseFI GTSAC 5 cut(s) 22, 254, 436, 670, 787
TseI GCWGC 2 cut(s) 80, 1364
Tsp45I GTSAC 5 cut(s) 22, 254, 436, 670, 787
TspRI CASTG 6 cut(s) 252, 468, 702, 819, 1269, 1386
VspI ATTAAT 2 cut(s) 96, 1136
XapI RAATTY 7 cut(s) 350, 404, 1078, 1091, 1154, 1322, 1439
XceI RCATGY 2 cut(s) 476, 827
XmaJI CCTAGG 3 cut(s) 338, 908, 1490
XmnI GAANNNNTTC 1 cut(s) 1471
XspI CTAG 7 cut(s) 339, 578, 909, 1257, 1340, 1491, 1536
Zsp2I ATGCAT 3 cut(s) 478, 829, 1044
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.