Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004019.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

31455 .. 34335

Gene Structure 2881 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

atgatgttcaagcagcagcagaagatgatagtggggaataccaagctagcgttggccccgaatgtggcctttgttgttaataagagcttttccagggtttacagtggggggcccagcccattcactggggccattgagaagcttcgtgggaaattgccacactgtccctctaagacaaaagacgcgtgcgactccaaaactctcgcagcgattcccaaatcagagagccaatcccaaatcggagctcacaaaatgtcatccaccaccttcagcggagatgaaacggcaccgttcttcggcttcctcggcgccgccgccgcactagttttctcctgtatgggcgcggcttacggaacggcgaagagcggcgtcggagtggcgtcgatgggcgtgatgaggccggagctggtgatgaagtcgattgtgccggtggttatggcgggagtgttgggtatttatggtttgatcattgctgtgatcataagtacggggattaatccaaaggccaagtcttattatctttttgacggctatgcacatctctcctccggtcttgcttgcggcctcgccggcctttctgccggaatggctatcggaatcgttggtgatgccggtgttagagctaatgcacagcagccaaagctttttgttggaatgatcctcatactcatttttgctgaagcgttggctttgtatggtctgatcgttggtatcatcctttcatcccgagctgggcagtccagagcagattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000220 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006885 GO:0007035 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0016020 GO:0016021 GO:0016462 GO:0016469 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030003 GO:0030004 GO:0030641 GO:0031090 GO:0031224 GO:0032991 GO:0033176 GO:0033177 GO:0033179 GO:0034220 GO:0036442 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0045851 GO:0046961 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051452 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04142 ko04145 ko04721 ko04966 ko05110 ko05120 ko05152 ko05323 map00190 map01100 map04142 map04145 map04721 map04966 map05110 map05120 map05152 map05323

Pfam Domains

Protein Families

ATP-synt_C

Protein Analysis

250

Amino Acids

25.76

Weight (kDa)

9.62

Isoelectric Point (pI)

45.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_C	PF00137	102 - 161	8.7e-15	ATP synthase subunit C
ATP-synt_C	PF00137	182 - 240	6.9e-18	ATP synthase subunit C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	286, 308
AccB7I	CCANNNNNTGG	1 cut(s)	125
AccBSI	CCGCTC	1 cut(s)	366
AccII	CGCG	2 cut(s)	185, 344
AciI	CCGC	8 cut(s)	273, 312, 315, 318, 344, 366, 440, 561
AclWI	GGATC	1 cut(s)	652
AcuI	CTGAAG	2 cut(s)	253, 699
AcyI	GRCGYC	3 cut(s)	309, 369, 380
AfaI	GTAC	1 cut(s)	487
AfiI	CCNNNNNNNGG	4 cut(s)	64, 125, 296, 732
AflIII	ACRYGT	1 cut(s)	183
AgsI	TTSAA	1 cut(s)	10
AhlI	ACTAGT	1 cut(s)	322
AjnI	CCWGG	1 cut(s)	92
AluBI	AGCT	8 cut(s)	46, 87, 142, 245, 406, 623, 643, 731
AluI	AGCT	8 cut(s)	46, 87, 142, 245, 406, 623, 643, 731
Alw21I	GWGCWC	1 cut(s)	247
AlwI	GGATC	1 cut(s)	652
Ama87I	CYCGRG	1 cut(s)	726
AoxI	GGCC	8 cut(s)	54, 66, 110, 129, 398, 504, 562, 571
ApaI	GGGCCC	1 cut(s)	114
ApeKI	GCWGC	4 cut(s)	13, 16, 206, 634
ArsI	GACNNNNNNTTYG	2 cut(s)	494, 526
AseI	ATTAAT	1 cut(s)	495
AspLEI	GCGC	2 cut(s)	311, 344
AspS9I	GGNCC	4 cut(s)	55, 110, 111, 129
AsuHPI	GGTGA	2 cut(s)	421, 617
AsuNHI	GCTAGC	1 cut(s)	46
AvaI	CYCGRG	1 cut(s)	726
BaeGI	GKGCMC	1 cut(s)	114
BanI	GGYRCC	2 cut(s)	286, 308
BanII	GRGCYC	2 cut(s)	114, 247
Bbv12I	GWGCWC	1 cut(s)	247
BbvI	GCAGC	4 cut(s)	25, 28, 218, 646
BccI	CCATC	1 cut(s)	379
BceAI	ACGGC	3 cut(s)	300, 372, 544
BciT130I	CCWGG	1 cut(s)	94
BclI	TGATCA	2 cut(s)	465, 477
BcuI	ACTAGT	1 cut(s)	322
BfaI	CTAG	2 cut(s)	47, 323
BfoI	RGCGCY	1 cut(s)	312
BglI	GCCNNNNNGGC	2 cut(s)	570, 587
Bme1390I	CCNGG	1 cut(s)	94
BmeT110I	CYCGRG	1 cut(s)	726
BmgT120I	GGNCC	4 cut(s)	55, 110, 111, 129
BmiI	GGNNCC	6 cut(s)	57, 111, 112, 130, 288, 310
BmrFI	CCNGG	1 cut(s)	94
BmrI	ACTGGG	1 cut(s)	135
BmsI	GCATC	1 cut(s)	598
BmtI	GCTAGC	1 cut(s)	50
BmuI	ACTGGG	1 cut(s)	135
BsaHI	GRCGYC	3 cut(s)	309, 369, 380
BsaJI	CCNNGG	2 cut(s)	93, 304
BsaWI	WCCGGW	1 cut(s)	548
Bsc4I	CCNNNNNNNGG	4 cut(s)	64, 125, 296, 732
Bse118I	RCCGGY	3 cut(s)	427, 569, 611
Bse1I	ACTGG	1 cut(s)	130
Bse3DI	GCAATG	1 cut(s)	468
BseBI	CCWGG	1 cut(s)	94
BseDI	CCNNGG	2 cut(s)	93, 304
BseGI	GGATG	3 cut(s)	257, 714, 722
BseLI	CCNNNNNNNGG	4 cut(s)	64, 125, 296, 732
BseMI	GCAATG	1 cut(s)	468
BseNI	ACTGG	1 cut(s)	130
BseRI	GAGGAG	1 cut(s)	535
BseSI	GKGCMC	1 cut(s)	114
BseXI	GCAGC	4 cut(s)	25, 28, 218, 646
BseYI	CCCAGC	2 cut(s)	113, 731
Bsh1236I	CGCG	2 cut(s)	185, 344
BshFI	GGCC	8 cut(s)	56, 68, 112, 131, 400, 506, 564, 573
BshNI	GGYRCC	2 cut(s)	286, 308
BsiHKAI	GWGCWC	1 cut(s)	247
BsiHKCI	CYCGRG	1 cut(s)	726
BsiSI	CCGG	6 cut(s)	401, 428, 549, 570, 582, 612
BslFI	GGGAC	1 cut(s)	150
BslI	CCNNNNNNNGG	4 cut(s)	64, 125, 296, 732
BsmFI	GGGAC	1 cut(s)	150
BsnI	GGCC	8 cut(s)	56, 68, 112, 131, 400, 506, 564, 573
BsoBI	CYCGRG	1 cut(s)	726
Bsp120I	GGGCCC	1 cut(s)	110
Bsp1286I	GDGCHC	2 cut(s)	114, 247
Bsp143I	GATC	4 cut(s)	465, 477, 657, 702
BspACI	CCGC	8 cut(s)	273, 312, 315, 318, 344, 366, 440, 561
BspANI	GGCC	8 cut(s)	56, 68, 112, 131, 400, 506, 564, 573
BspFNI	CGCG	2 cut(s)	185, 344
BspLI	GGNNCC	6 cut(s)	57, 111, 112, 130, 288, 310
BspOI	GCTAGC	1 cut(s)	50
BspPI	GGATC	1 cut(s)	652
BspQI	GCTCTTC	1 cut(s)	356
BspT107I	GGYRCC	2 cut(s)	286, 308
BsrBI	CCGCTC	1 cut(s)	366
BsrDI	GCAATG	1 cut(s)	468
BsrFI	RCCGGY	3 cut(s)	427, 569, 611
BsrI	ACTGG	1 cut(s)	130
BssAI	RCCGGY	3 cut(s)	427, 569, 611
BssECI	CCNNGG	2 cut(s)	93, 304
BssMI	GATC	4 cut(s)	465, 477, 657, 702
BssNI	GRCGYC	3 cut(s)	309, 369, 380
Bst2UI	CCWGG	1 cut(s)	94
Bst4CI	ACNGT	3 cut(s)	104, 164, 291
Bst6I	CTCTTC	1 cut(s)	356
BstACI	GRCGYC	3 cut(s)	309, 369, 380
BstC8I	GCNNGC	4 cut(s)	48, 187, 559, 571
BstDEI	CTNAG	1 cut(s)	171
BstF5I	GGATG	3 cut(s)	257, 714, 722
BstFNI	CGCG	2 cut(s)	185, 344
BstH2I	RGCGCY	1 cut(s)	312
BstHHI	GCGC	2 cut(s)	311, 344
BstKTI	GATC	4 cut(s)	468, 480, 660, 705
BstMBI	GATC	4 cut(s)	465, 477, 657, 702
BstMWI	GCNNNNNNNGC	5 cut(s)	306, 317, 570, 587, 640
BstNI	CCWGG	1 cut(s)	94
BstSCI	CCNGG	1 cut(s)	92
BstSLI	GKGCMC	1 cut(s)	114
BstUI	CGCG	2 cut(s)	185, 344
BstV1I	GCAGC	4 cut(s)	25, 28, 218, 646
BsuRI	GGCC	8 cut(s)	56, 68, 112, 131, 400, 506, 564, 573
BtsCI	GGATG	3 cut(s)	257, 714, 722
BtsIMutI	CAGTG	3 cut(s)	109, 123, 160
Cac8I	GCNNGC	4 cut(s)	48, 187, 559, 571
CfoI	GCGC	2 cut(s)	311, 344
Cfr10I	RCCGGY	3 cut(s)	427, 569, 611
Cfr13I	GGNCC	4 cut(s)	55, 110, 111, 129
CseI	GACGC	3 cut(s)	191, 358, 369
Csp6I	GTAC	1 cut(s)	486
CviQI	GTAC	1 cut(s)	486
DdeI	CTNAG	1 cut(s)	171
DinI	GGCGCC	1 cut(s)	310
DpnI	GATC	4 cut(s)	467, 479, 659, 704
DpnII	GATC	4 cut(s)	465, 477, 657, 702
Eam1104I	CTCTTC	1 cut(s)	356
EarI	CTCTTC	1 cut(s)	356
Ecl136II	GAGCTC	1 cut(s)	245
Eco24I	GRGCYC	2 cut(s)	114, 247
Eco53kI	GAGCTC	1 cut(s)	245
Eco57I	CTGAAG	2 cut(s)	253, 699
Eco88I	CYCGRG	1 cut(s)	726
EcoICRI	GAGCTC	1 cut(s)	245
EcoO109I	RGGNCCY	1 cut(s)	110
EcoRII	CCWGG	1 cut(s)	92
EcoT38I	GRGCYC	2 cut(s)	114, 247
EgeI	GGCGCC	1 cut(s)	310
EheI	GGCGCC	1 cut(s)	310
FaiI	YATR	7 cut(s)	338, 437, 459, 482, 534, 665, 696
FaqI	GGGAC	1 cut(s)	150
FauI	CCCGC	1 cut(s)	433
FbaI	TGATCA	2 cut(s)	465, 477
FokI	GGATG	3 cut(s)	244, 701, 709
FriOI	GRGCYC	2 cut(s)	114, 247
FspBI	CTAG	2 cut(s)	47, 323
GlaI	GCGC	2 cut(s)	310, 343
GsaI	CCCAGC	2 cut(s)	117, 735
HaeII	RGCGCY	1 cut(s)	312
HaeIII	GGCC	8 cut(s)	56, 68, 112, 131, 400, 506, 564, 573
HapII	CCGG	6 cut(s)	401, 428, 549, 570, 582, 612
HgaI	GACGC	3 cut(s)	191, 358, 369
HhaI	GCGC	2 cut(s)	311, 344
Hin1I	GRCGYC	3 cut(s)	309, 369, 380
Hin6I	GCGC	2 cut(s)	309, 342
HinP1I	GCGC	2 cut(s)	309, 342
HindIII	AAGCTT	2 cut(s)	140, 641
HinfI	GANTC	3 cut(s)	191, 211, 597
HpaII	CCGG	6 cut(s)	401, 428, 549, 570, 582, 612
HphI	GGTGA	2 cut(s)	421, 617
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188I	TCNGA	5 cut(s)	223, 242, 374, 596, 702
Hpy188III	TCNNGA	2 cut(s)	726, 741
Hpy8I	GTNNAC	1 cut(s)	100
Hpy99I	CGWCG	2 cut(s)	374, 385
HpyAV	CCTTC	1 cut(s)	277
HpyCH4III	ACNGT	3 cut(s)	104, 164, 291
HpyCH4V	TGCA	2 cut(s)	536, 629
HpyF10VI	GCNNNNNNNGC	5 cut(s)	306, 317, 570, 587, 640
HpyF3I	CTNAG	1 cut(s)	171
Hsp92I	GRCGYC	3 cut(s)	309, 369, 380
HspAI	GCGC	2 cut(s)	309, 342
KasI	GGCGCC	1 cut(s)	308
KroI	GCCGGC	1 cut(s)	569
KroNI	GCCGGC	1 cut(s)	571
Ksp22I	TGATCA	2 cut(s)	465, 477
Kzo9I	GATC	4 cut(s)	465, 477, 657, 702
LguI	GCTCTTC	1 cut(s)	356
LmnI	GCTCC	2 cut(s)	242, 403
Lsp1109I	GCAGC	4 cut(s)	25, 28, 218, 646
LweI	GCATC	1 cut(s)	598
MaeI	CTAG	2 cut(s)	47, 323
MalI	GATC	4 cut(s)	467, 479, 659, 704
MbiI	CCGCTC	1 cut(s)	366
MboI	GATC	4 cut(s)	465, 477, 657, 702
MboII	GAAGA	3 cut(s)	34, 286, 373
MhlI	GDGCHC	2 cut(s)	114, 247
MluCI	AATT	1 cut(s)	152
MluI	ACGCGT	1 cut(s)	183
Mly113I	GGCGCC	1 cut(s)	309
MlyI	GAGTC	1 cut(s)	185
MmeI	TCCRAC	2 cut(s)	352, 631
MnlI	CCTC	6 cut(s)	178, 314, 390, 556, 575, 671
MroNI	GCCGGC	1 cut(s)	569
MseI	TTAA	2 cut(s)	78, 495
MslI	CAYNNNNRTG	1 cut(s)	473
MspA1I	CMGCKG	1 cut(s)	273
MspI	CCGG	6 cut(s)	401, 428, 549, 570, 582, 612
MspR9I	CCNGG	1 cut(s)	94
MvaI	CCWGG	1 cut(s)	94
MvnI	CGCG	2 cut(s)	185, 344
MwoI	GCNNNNNNNGC	5 cut(s)	306, 317, 570, 587, 640
NaeI	GCCGGC	1 cut(s)	571
NarI	GGCGCC	1 cut(s)	309
NdeII	GATC	4 cut(s)	465, 477, 657, 702
NgoMIV	GCCGGC	1 cut(s)	569
NheI	GCTAGC	1 cut(s)	46
NlaIV	GGNNCC	6 cut(s)	57, 111, 112, 130, 288, 310
NmeAIII	GCCGAG	1 cut(s)	285
PciSI	GCTCTTC	1 cut(s)	356
PdiI	GCCGGC	1 cut(s)	571
PfeI	GAWTC	2 cut(s)	211, 597
PflMI	CCANNNNNTGG	1 cut(s)	125
PleI	GAGTC	1 cut(s)	185
PluTI	GGCGCC	1 cut(s)	312
PpsI	GAGTC	1 cut(s)	185
PshBI	ATTAAT	1 cut(s)	495
Psp124BI	GAGCTC	1 cut(s)	247
Psp6I	CCWGG	1 cut(s)	92
PspFI	CCCAGC	2 cut(s)	113, 731
PspGI	CCWGG	1 cut(s)	92
PspN4I	GGNNCC	6 cut(s)	57, 111, 112, 130, 288, 310
PspOMI	GGGCCC	1 cut(s)	110
PspPI	GGNCC	4 cut(s)	55, 110, 111, 129
RsaI	GTAC	1 cut(s)	487
RsaNI	GTAC	1 cut(s)	486
RseI	CAYNNNNRTG	1 cut(s)	473
SacI	GAGCTC	1 cut(s)	247
SapI	GCTCTTC	1 cut(s)	356
SaqAI	TTAA	2 cut(s)	78, 495
Sau3AI	GATC	4 cut(s)	465, 477, 657, 702
Sau96I	GGNCC	4 cut(s)	55, 110, 111, 129
SchI	GAGTC	1 cut(s)	185
ScrFI	CCNGG	1 cut(s)	94
SduI	GDGCHC	2 cut(s)	114, 247
SetI	ASST	9 cut(s)	48, 89, 144, 247, 269, 408, 625, 645, 733
SfaNI	GCATC	1 cut(s)	598
SfiI	GGCCNNNNNGGCC	1 cut(s)	570
SfoI	GGCGCC	1 cut(s)	310
SmiMI	CAYNNNNRTG	1 cut(s)	473
SpeI	ACTAGT	1 cut(s)	322
Sse9I	AATT	1 cut(s)	152
SsiI	CCGC	8 cut(s)	273, 312, 315, 318, 344, 366, 440, 561
SspDI	GGCGCC	1 cut(s)	308
SspMI	CTAG	2 cut(s)	47, 323
SstI	GAGCTC	1 cut(s)	247
StyD4I	CCNGG	1 cut(s)	92
TaaI	ACNGT	3 cut(s)	104, 164, 291
TaqI	TCGA	2 cut(s)	383, 419
TasI	AATT	1 cut(s)	152
TauI	GCSGC	6 cut(s)	314, 317, 320, 347, 369, 564
TfiI	GAWTC	2 cut(s)	211, 597
Tru1I	TTAA	2 cut(s)	78, 495
Tru9I	TTAA	2 cut(s)	78, 495
TscAI	CASTG	3 cut(s)	109, 130, 167
TseI	GCWGC	4 cut(s)	13, 16, 206, 634
TspDTI	ATGAA	3 cut(s)	294, 428, 711
TspGWI	ACGGA	1 cut(s)	366
TspRI	CASTG	3 cut(s)	109, 130, 167
Van91I	CCANNNNNTGG	1 cut(s)	125
VspI	ATTAAT	1 cut(s)	495
XcmI	CCANNNNNNNNNTGG	1 cut(s)	49
XspI	CTAG	2 cut(s)	47, 323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.