Rmu_sc0004020.1_g000006

ubiquitin-60S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004020.1
N/A
Physical Location & Seq
Forward (+)
38058 .. 43330
5273 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 750 bp
atggctttggtcaagaatcgggtagctcttagttttatgatcgaaaagtcctatcaagtttgcaaagataaatatagcaagactagaatagaagatctaattgctattgttcctgctactgctactactcctactcctgcccctgccactgcaaatgaagctgctattgaaccaaggacacgttcaacaataaagaagacaaagtttgacgaaaagctgttgaatctagcggcactatcgacaacgcgcgtcaaggccaagatccaggagaaggaaagtatccccccggaccagcagatgctcattttcatcggaaagcagctcgaggatggttgtactcctgctaattacaacattcagaaagaatcaactctgcatttggttctgaggcttcgtggtggtattatcgagccttctctcatggcattgactagaaagtataaccaagagaagatgatctgccgcaagtgttatgcactccttcattgcggtgttgtcaactgtaggaagaagtgtggacacaataaccagctagttgaggcgaaagaagaagatcaaatacggcaaaatggcttcgtatcccgtatcgatcctagatacgggtacgataagctgggatacgcagatccggatttgggaaccattagtgatggaggaacacctccggttgatgatggagatgaagaccttgaggatgttgtccaagttgaattaagttgtgttaaccttttgtttaaacatttggattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 ko03320 map03010 map03320
Pfam Domains
Protein Families
Ribosomal_L40e ubiquitin

Protein Analysis

249

Amino Acids

27.85

Weight (kDa)

7.53

Isoelectric Point (pI)

42.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ubiquitin PF00240 83 - 132 8.6e-16 Ubiquitin family
Rad60-SLD PF11976 84 - 129 5.4e-07 Ubiquitin-2 like Rad60 SUMO-like
Ribosomal_L40e PF01020 136 - 183 1.7e-20 Ribosomal L40e family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 247, 249
AccIII TCCGGA 1 cut(s) 628
AciI CCGC 3 cut(s) 230, 463, 489
AclWI GGATC 3 cut(s) 256, 584, 620
AfaI GTAC 2 cut(s) 337, 605
AfiI CCNNNNNNNGG 3 cut(s) 271, 599, 635
AflIII ACRYGT 1 cut(s) 179
AgsI TTSAA 4 cut(s) 170, 186, 223, 710
AjnI CCWGG 1 cut(s) 264
AjuI GAANNNNNNNTTGG 2 cut(s) 166, 198
AluBI AGCT 6 cut(s) 26, 161, 217, 322, 532, 613
AluI AGCT 6 cut(s) 26, 161, 217, 322, 532, 613
AlwI GGATC 3 cut(s) 256, 584, 620
Ama87I CYCGRG 1 cut(s) 323
Aor13HI TCCGGA 1 cut(s) 628
AoxI GGCC 1 cut(s) 255
ApeKI GCWGC 2 cut(s) 161, 319
AspLEI GCGC 1 cut(s) 249
AspS9I GGNCC 1 cut(s) 289
AsuC2I CCSGG 1 cut(s) 287
AvaI CYCGRG 1 cut(s) 323
AvaII GGWCC 1 cut(s) 289
BarI GAAGNNNNNNTAC 2 cut(s) 543, 575
BbsI GAAGAC 2 cut(s) 203, 690
BbvI GCAGC 2 cut(s) 148, 331
BccI CCATC 3 cut(s) 323, 644, 668
BceAI ACGGC 1 cut(s) 578
BciT130I CCWGG 1 cut(s) 266
BciVI GTATCC 3 cut(s) 290, 589, 611
BcnI CCSGG 1 cut(s) 287
BfaI CTAG 5 cut(s) 84, 227, 432, 533, 594
BfmI CTRYAG 1 cut(s) 502
BfuI GTATCC 3 cut(s) 290, 589, 611
BglII AGATCT 1 cut(s) 94
BisI GCNGC 4 cut(s) 162, 231, 320, 463
BlsI GCNGC 4 cut(s) 163, 232, 321, 464
Bme1390I CCNGG 2 cut(s) 266, 287
Bme18I GGWCC 1 cut(s) 289
BmeT110I CYCGRG 1 cut(s) 323
BmgT120I GGNCC 1 cut(s) 289
BmiI GGNNCC 1 cut(s) 640
BmrFI CCNGG 2 cut(s) 266, 287
BmsI GCATC 1 cut(s) 288
BpiI GAAGAC 2 cut(s) 203, 690
BpuEI CTTGAG 1 cut(s) 710
BpuMI CCSGG 1 cut(s) 287
Bsa29I ATCGAT 1 cut(s) 588
BsaJI CCNNGG 2 cut(s) 173, 285
BsaWI WCCGGW 2 cut(s) 628, 664
BsaXI ACNNNNNCTCC 2 cut(s) 118, 148
Bsc4I CCNNNNNNNGG 3 cut(s) 271, 599, 635
Bse3DI GCAATG 1 cut(s) 484
BseAI TCCGGA 1 cut(s) 628
BseBI CCWGG 1 cut(s) 266
BseCI ATCGAT 1 cut(s) 588
BseDI CCNNGG 2 cut(s) 173, 285
BseGI GGATG 2 cut(s) 334, 700
BseLI CCNNNNNNNGG 3 cut(s) 271, 599, 635
BseMI GCAATG 1 cut(s) 484
BseMII CTCAG 1 cut(s) 377
BseXI GCAGC 2 cut(s) 148, 331
BseYI CCCAGC 1 cut(s) 613
Bsh1236I CGCG 2 cut(s) 247, 249
BshFI GGCC 1 cut(s) 257
BshVI ATCGAT 1 cut(s) 588
BsiHKCI CYCGRG 1 cut(s) 323
BsiSI CCGG 3 cut(s) 287, 629, 665
BslI CCNNNNNNNGG 3 cut(s) 271, 599, 635
BsnI GGCC 1 cut(s) 257
BsoBI CYCGRG 1 cut(s) 323
Bsp13I TCCGGA 1 cut(s) 628
Bsp143I GATC 7 cut(s) 39, 94, 261, 456, 553, 589, 625
BspACI CCGC 3 cut(s) 230, 463, 489
BspANI GGCC 1 cut(s) 257
BspCNI CTCAG 1 cut(s) 378
BspDI ATCGAT 1 cut(s) 588
BspEI TCCGGA 1 cut(s) 628
BspFNI CGCG 2 cut(s) 247, 249
BspLI GGNNCC 1 cut(s) 640
BspPI GGATC 3 cut(s) 256, 584, 620
BsrDI GCAATG 1 cut(s) 484
BssECI CCNNGG 2 cut(s) 173, 285
BssMI GATC 7 cut(s) 39, 94, 261, 456, 553, 589, 625
BssT1I CCWWGG 1 cut(s) 173
Bst2UI CCWGG 1 cut(s) 266
Bst4CI ACNGT 1 cut(s) 503
BstDEI CTNAG 2 cut(s) 29, 386
BstF5I GGATG 2 cut(s) 334, 700
BstFNI CGCG 2 cut(s) 247, 249
BstHHI GCGC 1 cut(s) 249
BstKTI GATC 7 cut(s) 42, 97, 264, 459, 556, 592, 628
BstMBI GATC 7 cut(s) 39, 94, 261, 456, 553, 589, 625
BstMWI GCNNNNNNNGC 1 cut(s) 158
BstNI CCWGG 1 cut(s) 266
BstSCI CCNGG 2 cut(s) 264, 285
BstSFI CTRYAG 1 cut(s) 502
BstUI CGCG 2 cut(s) 247, 249
BstV1I GCAGC 2 cut(s) 148, 331
BstV2I GAAGAC 2 cut(s) 203, 690
BstX2I RGATCY 3 cut(s) 94, 261, 625
BstYI RGATCY 3 cut(s) 94, 261, 625
Bsu15I ATCGAT 1 cut(s) 588
BsuI GTATCC 3 cut(s) 290, 589, 611
BsuRI GGCC 1 cut(s) 257
BsuTUI ATCGAT 1 cut(s) 588
BtsCI GGATG 2 cut(s) 334, 700
BtsI GCAGTG 1 cut(s) 147
BtsIMutI CAGTG 1 cut(s) 147
CfoI GCGC 1 cut(s) 249
Cfr13I GGNCC 1 cut(s) 289
ClaI ATCGAT 1 cut(s) 588
CseI GACGC 1 cut(s) 238
Csp6I GTAC 2 cut(s) 336, 604
CviAII CATG 1 cut(s) 421
CviQI GTAC 2 cut(s) 336, 604
DdeI CTNAG 2 cut(s) 29, 386
DpnI GATC 7 cut(s) 41, 96, 263, 458, 555, 591, 627
DpnII GATC 7 cut(s) 39, 94, 261, 456, 553, 589, 625
DraI TTTAAA 1 cut(s) 736
Eco130I CCWWGG 1 cut(s) 173
Eco47I GGWCC 1 cut(s) 289
Eco88I CYCGRG 1 cut(s) 323
EcoRII CCWGG 1 cut(s) 264
EcoT14I CCWWGG 1 cut(s) 173
ErhI CCWWGG 1 cut(s) 173
FaeI CATG 1 cut(s) 424
FaiI YATR 5 cut(s) 38, 75, 422, 441, 474
FatI CATG 1 cut(s) 420
Fnu4HI GCNGC 4 cut(s) 162, 231, 320, 463
FokI GGATG 2 cut(s) 341, 707
Fsp4HI GCNGC 4 cut(s) 162, 231, 320, 463
FspBI CTAG 5 cut(s) 84, 227, 432, 533, 594
GlaI GCGC 1 cut(s) 248
GluI GCNGC 4 cut(s) 162, 231, 320, 463
GsaI CCCAGC 1 cut(s) 617
HaeIII GGCC 1 cut(s) 257
HapII CCGG 3 cut(s) 287, 629, 665
HgaI GACGC 1 cut(s) 238
HhaI GCGC 1 cut(s) 249
Hin1II CATG 1 cut(s) 424
Hin6I GCGC 1 cut(s) 247
HinP1I GCGC 1 cut(s) 247
HincII GTYRAC 2 cut(s) 499, 724
HindII GTYRAC 2 cut(s) 499, 724
HinfI GANTC 3 cut(s) 16, 223, 365
HpaI GTTAAC 1 cut(s) 724
HpaII CCGG 3 cut(s) 287, 629, 665
Hpy166II GTNNAC 3 cut(s) 499, 518, 724
Hpy188I TCNGA 3 cut(s) 314, 360, 387
Hpy188III TCNNGA 2 cut(s) 13, 629
Hpy8I GTNNAC 3 cut(s) 499, 518, 724
HpyAV CCTTC 3 cut(s) 265, 423, 491
HpyCH4III ACNGT 1 cut(s) 503
HpyCH4IV ACGT 1 cut(s) 181
HpyCH4V TGCA 4 cut(s) 63, 152, 376, 476
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
HpyF3I CTNAG 2 cut(s) 29, 386
HpySE526I ACGT 1 cut(s) 181
Hsp92II CATG 1 cut(s) 424
HspAI GCGC 1 cut(s) 247
Kpn2I TCCGGA 1 cut(s) 628
KspAI GTTAAC 1 cut(s) 724
Kzo9I GATC 7 cut(s) 39, 94, 261, 456, 553, 589, 625
Lsp1109I GCAGC 2 cut(s) 148, 331
LweI GCATC 1 cut(s) 288
MaeI CTAG 5 cut(s) 84, 227, 432, 533, 594
MaeII ACGT 1 cut(s) 181
MalI GATC 7 cut(s) 41, 96, 263, 458, 555, 591, 627
MboI GATC 7 cut(s) 39, 94, 261, 456, 553, 589, 625
MboII GAAGA 7 cut(s) 104, 208, 463, 520, 560, 563, 695
MflI RGATCY 3 cut(s) 94, 261, 625
MluCI AATT 3 cut(s) 99, 346, 710
MnlI CCTC 6 cut(s) 319, 381, 532, 647, 672, 685
MroI TCCGGA 1 cut(s) 628
MseI TTAA 3 cut(s) 713, 723, 735
MslI CAYNNNNRTG 1 cut(s) 489
MspI CCGG 3 cut(s) 287, 629, 665
MspR9I CCNGG 2 cut(s) 266, 287
MssI GTTTAAAC 1 cut(s) 736
MvaI CCWGG 1 cut(s) 266
MvnI CGCG 2 cut(s) 247, 249
MwoI GCNNNNNNNGC 1 cut(s) 158
NciI CCSGG 1 cut(s) 287
NdeII GATC 7 cut(s) 39, 94, 261, 456, 553, 589, 625
NlaIII CATG 1 cut(s) 424
NlaIV GGNNCC 1 cut(s) 640
PaeR7I CTCGAG 1 cut(s) 323
PfeI GAWTC 3 cut(s) 16, 223, 365
PfoI TCCNGGA 1 cut(s) 264
PkrI GCNGC 4 cut(s) 163, 232, 321, 464
PmeI GTTTAAAC 1 cut(s) 736
Psp6I CCWGG 1 cut(s) 264
PspFI CCCAGC 1 cut(s) 613
PspGI CCWGG 1 cut(s) 264
PspN4I GGNNCC 1 cut(s) 640
PspPI GGNCC 1 cut(s) 289
PspXI VCTCGAGB 1 cut(s) 323
PsuI RGATCY 3 cut(s) 94, 261, 625
RsaI GTAC 2 cut(s) 337, 605
RsaNI GTAC 2 cut(s) 336, 604
RseI CAYNNNNRTG 1 cut(s) 489
SaqAI TTAA 3 cut(s) 713, 723, 735
SatI GCNGC 4 cut(s) 162, 231, 320, 463
Sau3AI GATC 7 cut(s) 39, 94, 261, 456, 553, 589, 625
Sau96I GGNCC 1 cut(s) 289
ScrFI CCNGG 2 cut(s) 266, 287
SfaNI GCATC 1 cut(s) 288
SfcI CTRYAG 1 cut(s) 502
Sfr274I CTCGAG 1 cut(s) 323
SinI GGWCC 1 cut(s) 289
SlaI CTCGAG 1 cut(s) 323
SmiMI CAYNNNNRTG 1 cut(s) 489
SmlI CTYRAG 2 cut(s) 323, 689
SmoI CTYRAG 2 cut(s) 323, 689
Sse9I AATT 3 cut(s) 99, 346, 710
SsiI CCGC 3 cut(s) 230, 463, 489
SspMI CTAG 5 cut(s) 84, 227, 432, 533, 594
StyD4I CCNGG 2 cut(s) 264, 285
StyI CCWWGG 1 cut(s) 173
TaaI ACNGT 1 cut(s) 503
TaiI ACGT 1 cut(s) 184
TaqI TCGA 5 cut(s) 42, 239, 324, 408, 588
TasI AATT 3 cut(s) 99, 346, 710
TatI WGTACW 1 cut(s) 335
TauI GCSGC 2 cut(s) 233, 465
TfiI GAWTC 3 cut(s) 16, 223, 365
Tru1I TTAA 3 cut(s) 713, 723, 735
Tru9I TTAA 3 cut(s) 713, 723, 735
TscAI CASTG 1 cut(s) 154
TseI GCWGC 2 cut(s) 161, 319
TspDTI ATGAA 4 cut(s) 171, 298, 473, 696
TspRI CASTG 1 cut(s) 154
VpaK11BI GGWCC 1 cut(s) 289
XhoI CTCGAG 1 cut(s) 323
XspI CTAG 5 cut(s) 84, 227, 432, 533, 594
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.