Rmu_sc0004037.1_g000009

kDa class II heat shock protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004037.1
N/A
Physical Location & Seq
Reverse (-)
17983 .. 19042
1060 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 477 bp
atgggtctggatgctccaatcttaatggcactgcagcacctagtggacctcccggaggagatcaagaagacctttaacgtctcgaccctgacctacgtccgtgacaccaaggctatggctgccactccggccgacgtgaaggagttacccaattcctatgtcttcgtcatcgacatgcctggacttaaaactctccaaatcaagacccggttccacgacccggtttgggacgacggagacctaatttgtcttctgtccttcgtccacggctttgaggccgaatggtggcaatggctttggcttgacgtcgccaacgtcttcatgcctatagtttttccagccggctatcccagacggcgtatcgaagcccgaaggcttctcaggttatatggcaggttttccgattcctgcctctactcgatgatggacgagtatctacggcttcctctcgatgtctccgacttctttgtgatgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0044424 GO:0044464 GO:0050896
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
HSP20

Protein Analysis

158

Amino Acids

18.44

Weight (kDa)

5.12

Isoelectric Point (pI)

54.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 309
Acc36I ACCTGC 1 cut(s) 384
AcoI YGGCCR 1 cut(s) 129
AcyI GRCGYC 1 cut(s) 306
AdeI CACNNNGTG 1 cut(s) 43
AfiI CCNNNNNNNGG 4 cut(s) 55, 220, 226, 285
AjiI CACGTC 1 cut(s) 136
AjnI CCWGG 1 cut(s) 178
Alw26I GTCTC 3 cut(s) 85, 231, 460
AoxI GGCC 2 cut(s) 129, 276
ApeKI GCWGC 2 cut(s) 34, 119
AspS9I GGNCC 1 cut(s) 46
AsuC2I CCSGG 3 cut(s) 53, 208, 221
AvaII GGWCC 1 cut(s) 46
BbsI GAAGAC 4 cut(s) 74, 154, 242, 310
BbvI GCAGC 2 cut(s) 46, 106
BccI CCATC 1 cut(s) 418
BceAI ACGGC 3 cut(s) 283, 371, 455
BciT130I CCWGG 1 cut(s) 180
BcnI CCSGG 3 cut(s) 53, 208, 221
BcoDI GTCTC 3 cut(s) 85, 231, 460
BfaI CTAG 1 cut(s) 41
BfmI CTRYAG 2 cut(s) 32, 327
BfuAI ACCTGC 1 cut(s) 384
BglI GCCNNNNNGGC 1 cut(s) 128
BisI GCNGC 2 cut(s) 35, 120
BlsI GCNGC 2 cut(s) 36, 121
Bme1390I CCNGG 4 cut(s) 53, 180, 208, 221
Bme18I GGWCC 1 cut(s) 46
BmgBI CACGTC 1 cut(s) 136
BmgT120I GGNCC 1 cut(s) 46
BmiI GGNNCC 1 cut(s) 212
BmrFI CCNGG 4 cut(s) 53, 180, 208, 221
BoxI GACNNNNGTC 1 cut(s) 95
BpiI GAAGAC 4 cut(s) 74, 154, 242, 310
BpuMI CCSGG 3 cut(s) 53, 208, 221
BsaHI GRCGYC 1 cut(s) 306
BsaI GGTCTC 1 cut(s) 231
BsaJI CCNNGG 2 cut(s) 108, 265
Bsc4I CCNNNNNNNGG 4 cut(s) 55, 220, 226, 285
Bse118I RCCGGY 1 cut(s) 341
Bse3DI GCAATG 1 cut(s) 296
BseBI CCWGG 1 cut(s) 180
BseDI CCNNGG 2 cut(s) 108, 265
BseGI GGATG 1 cut(s) 16
BseLI CCNNNNNNNGG 4 cut(s) 55, 220, 226, 285
BseMI GCAATG 1 cut(s) 296
BseMII CTCAG 1 cut(s) 394
BseRI GAGGAG 1 cut(s) 71
BseX3I CGGCCG 1 cut(s) 129
BseXI GCAGC 2 cut(s) 46, 106
Bsh1285I CGRYCG 1 cut(s) 132
BshFI GGCC 2 cut(s) 131, 278
BsiEI CGRYCG 1 cut(s) 132
BsiSI CCGG 5 cut(s) 53, 128, 208, 221, 342
BslFI GGGAC 1 cut(s) 242
BslI CCNNNNNNNGG 4 cut(s) 55, 220, 226, 285
BsmAI GTCTC 3 cut(s) 85, 231, 460
BsmBI CGTCTC 1 cut(s) 85
BsmFI GGGAC 1 cut(s) 242
BsnI GGCC 2 cut(s) 131, 278
Bso31I GGTCTC 1 cut(s) 231
Bsp143I GATC 1 cut(s) 60
BspANI GGCC 2 cut(s) 131, 278
BspCNI CTCAG 1 cut(s) 393
BspLI GGNNCC 1 cut(s) 212
BspMAI CTGCAG 1 cut(s) 36
BspMI ACCTGC 1 cut(s) 384
BspTNI GGTCTC 1 cut(s) 231
BsrDI GCAATG 1 cut(s) 296
BsrFI RCCGGY 1 cut(s) 341
BssAI RCCGGY 1 cut(s) 341
BssECI CCNNGG 2 cut(s) 108, 265
BssMI GATC 1 cut(s) 60
BssNI GRCGYC 1 cut(s) 306
BssT1I CCWWGG 1 cut(s) 108
Bst2UI CCWGG 1 cut(s) 180
BstACI GRCGYC 1 cut(s) 306
BstC8I GCNNGC 1 cut(s) 343
BstDEI CTNAG 1 cut(s) 380
BstDSI CCRYGG 1 cut(s) 265
BstENI CCTNNNNNAGG 1 cut(s) 53
BstF5I GGATG 1 cut(s) 16
BstKTI GATC 1 cut(s) 63
BstMAI GTCTC 3 cut(s) 85, 231, 460
BstMBI GATC 1 cut(s) 60
BstMCI CGRYCG 1 cut(s) 132
BstMWI GCNNNNNNNGC 2 cut(s) 119, 128
BstNI CCWGG 1 cut(s) 180
BstNSI RCATGY 1 cut(s) 178
BstPAI GACNNNNGTC 1 cut(s) 95
BstSCI CCNGG 4 cut(s) 51, 178, 206, 219
BstSFI CTRYAG 2 cut(s) 32, 327
BstV1I GCAGC 2 cut(s) 46, 106
BstV2I GAAGAC 4 cut(s) 74, 154, 242, 310
BstXI CCANNNNNNTGG 1 cut(s) 115
BstZI CGGCCG 1 cut(s) 129
BsuRI GGCC 2 cut(s) 131, 278
BtgI CCRYGG 1 cut(s) 265
BtrI CACGTC 1 cut(s) 136
BtsCI GGATG 1 cut(s) 16
BtsI GCAGTG 1 cut(s) 29
BtsIMutI CAGTG 1 cut(s) 29
BveI ACCTGC 1 cut(s) 384
Cac8I GCNNGC 1 cut(s) 343
Cfr10I RCCGGY 1 cut(s) 341
Cfr13I GGNCC 1 cut(s) 46
CviAII CATG 2 cut(s) 175, 322
DdeI CTNAG 1 cut(s) 380
DpnI GATC 1 cut(s) 62
DpnII GATC 1 cut(s) 60
DraIII CACNNNGTG 1 cut(s) 43
EaeI YGGCCR 1 cut(s) 129
EagI CGGCCG 1 cut(s) 129
EclXI CGGCCG 1 cut(s) 129
Eco130I CCWWGG 1 cut(s) 108
Eco31I GGTCTC 1 cut(s) 231
Eco47I GGWCC 1 cut(s) 46
Eco52I CGGCCG 1 cut(s) 129
EcoNI CCTNNNNNAGG 1 cut(s) 53
EcoRII CCWGG 1 cut(s) 178
EcoT14I CCWWGG 1 cut(s) 108
ErhI CCWWGG 1 cut(s) 108
Esp3I CGTCTC 1 cut(s) 85
FaeI CATG 2 cut(s) 178, 325
FaiI YATR 7 cut(s) 116, 159, 176, 323, 329, 388, 390
FalI AAGNNNNNCTT 2 cut(s) 56, 88
FaqI GGGAC 1 cut(s) 242
FatI CATG 2 cut(s) 174, 321
Fnu4HI GCNGC 2 cut(s) 35, 120
FokI GGATG 1 cut(s) 23
Fsp4HI GCNGC 2 cut(s) 35, 120
FspBI CTAG 1 cut(s) 41
GluI GCNGC 2 cut(s) 35, 120
HaeIII GGCC 2 cut(s) 131, 278
HapII CCGG 5 cut(s) 53, 128, 208, 221, 342
Hin1I GRCGYC 1 cut(s) 306
Hin1II CATG 2 cut(s) 178, 325
HinfI GANTC 1 cut(s) 404
HpaII CCGG 5 cut(s) 53, 128, 208, 221, 342
Hpy166II GTNNAC 2 cut(s) 46, 265
Hpy188I TCNGA 2 cut(s) 403, 460
Hpy188III TCNNGA 5 cut(s) 8, 64, 82, 202, 449
Hpy8I GTNNAC 2 cut(s) 46, 265
Hpy99I CGWCG 3 cut(s) 137, 236, 311
HpyAV CCTTC 3 cut(s) 133, 268, 366
HpyCH4IV ACGT 5 cut(s) 78, 96, 135, 306, 315
HpyCH4V TGCA 1 cut(s) 34
HpyF10VI GCNNNNNNNGC 2 cut(s) 119, 128
HpyF3I CTNAG 1 cut(s) 380
HpySE526I ACGT 5 cut(s) 78, 96, 135, 306, 315
Hsp92I GRCGYC 1 cut(s) 306
Hsp92II CATG 2 cut(s) 178, 325
KroI GCCGGC 1 cut(s) 341
KroNI GCCGGC 1 cut(s) 343
Kzo9I GATC 1 cut(s) 60
LmnI GCTCC 1 cut(s) 19
Lsp1109I GCAGC 2 cut(s) 46, 106
MaeI CTAG 1 cut(s) 41
MaeII ACGT 5 cut(s) 78, 96, 135, 306, 315
MaeIII GTNAC 2 cut(s) 101, 144
MalI GATC 1 cut(s) 62
MboI GATC 1 cut(s) 60
MboII GAAGA 4 cut(s) 79, 154, 242, 310
MluCI AATT 2 cut(s) 151, 243
MnlI CCTC 5 cut(s) 49, 59, 268, 422, 456
MroNI GCCGGC 1 cut(s) 341
MseI TTAA 3 cut(s) 23, 75, 186
MslI CAYNNNNRTG 1 cut(s) 173
MspI CCGG 5 cut(s) 53, 128, 208, 221, 342
MspR9I CCNGG 4 cut(s) 53, 180, 208, 221
MvaI CCWGG 1 cut(s) 180
MwoI GCNNNNNNNGC 2 cut(s) 119, 128
NaeI GCCGGC 1 cut(s) 343
NciI CCSGG 3 cut(s) 53, 208, 221
NdeII GATC 1 cut(s) 60
NgoMIV GCCGGC 1 cut(s) 341
NlaIII CATG 2 cut(s) 178, 325
NlaIV GGNNCC 1 cut(s) 212
NmuCI GTSAC 1 cut(s) 101
NspI RCATGY 1 cut(s) 178
PcsI WCGNNNNNNNCGW 2 cut(s) 312, 456
PdiI GCCGGC 1 cut(s) 343
PfeI GAWTC 1 cut(s) 404
PfoI TCCNGGA 1 cut(s) 51
PkrI GCNGC 2 cut(s) 36, 121
PshAI GACNNNNGTC 1 cut(s) 95
Psp6I CCWGG 1 cut(s) 178
PspGI CCWGG 1 cut(s) 178
PspN4I GGNNCC 1 cut(s) 212
PspPI GGNCC 1 cut(s) 46
PstI CTGCAG 1 cut(s) 36
RseI CAYNNNNRTG 1 cut(s) 173
SaqAI TTAA 3 cut(s) 23, 75, 186
SatI GCNGC 2 cut(s) 35, 120
Sau3AI GATC 1 cut(s) 60
Sau96I GGNCC 1 cut(s) 46
ScrFI CCNGG 4 cut(s) 53, 180, 208, 221
SfcI CTRYAG 2 cut(s) 32, 327
SinI GGWCC 1 cut(s) 46
SmiMI CAYNNNNRTG 1 cut(s) 173
Sse9I AATT 2 cut(s) 151, 243
SspMI CTAG 1 cut(s) 41
StyD4I CCNGG 4 cut(s) 51, 178, 206, 219
StyI CCWWGG 1 cut(s) 108
TaiI ACGT 5 cut(s) 81, 99, 138, 309, 318
TaqI TCGA 5 cut(s) 83, 171, 363, 419, 450
TasI AATT 2 cut(s) 151, 243
TfiI GAWTC 1 cut(s) 404
Tru1I TTAA 3 cut(s) 23, 75, 186
Tru9I TTAA 3 cut(s) 23, 75, 186
TscAI CASTG 1 cut(s) 36
TseFI GTSAC 1 cut(s) 101
TseI GCWGC 2 cut(s) 34, 119
Tsp45I GTSAC 1 cut(s) 101
TspDTI ATGAA 1 cut(s) 310
TspGWI ACGGA 2 cut(s) 89, 249
TspRI CASTG 1 cut(s) 36
VpaK11BI GGWCC 1 cut(s) 46
XagI CCTNNNNNAGG 1 cut(s) 53
XceI RCATGY 1 cut(s) 178
XspI CTAG 1 cut(s) 41
ZraI GACGTC 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.