Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004076.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

130999 .. 131910

Gene Structure 912 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

atgcttgcaccccaagtatttgatgaaattacccaacctgcagatttgccatcttggaattcgatcatagatgcgtatgtgaaagtgggtttgattgatgttgcacgagagatgttcgatgaaatgctcaagagaaatatgatctcttggagttgtatgataaaacggtctggagacagtttaagcatgtcacagttaaattcactgacatattattactttttcattcagaaattgttcaaatgggttgaaacagatgaatatgatgattcagaatccgaggacccttctgaagatgagagtgttaaactgaaagagcttgatgaagatgagagtgttaaagagaaagagatgatgggaacaagtttgaaaaaagagaaaaggaggctagaaacagagatagagaaaagggagggagaacttagaaaactaagggaagacaaactcagttcggaagaggagaaaaggagattacatactaaattagagagaaaggaggaagccctaagagaattaagagaagataaaatgaatttggaagaagagagagctatgctagtggcaagagttagtacactagagaagatgatcttctcaagtagacaagaaggcggcagcggaattgctagagattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

211

Amino Acids

24.91

Weight (kDa)

4.86

Isoelectric Point (pI)

69.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR	PF01535	18 - 46	5.3e-08	PPR repeat
PPR_2	PF13041	18 - 47	8.2e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	46
AccI	GTMKAC	1 cut(s)	601
AciI	CCGC	2 cut(s)	612, 618
AcsI	RAATTY	3 cut(s)	58, 199, 532
AcuI	CTGAAG	1 cut(s)	312
AfaI	GTAC	1 cut(s)	574
AgsI	TTSAA	3 cut(s)	241, 251, 370
AluBI	AGCT	2 cut(s)	319, 551
AluI	AGCT	2 cut(s)	319, 551
Alw26I	GTCTC	1 cut(s)	168
ApeKI	GCWGC	1 cut(s)	615
ApoI	RAATTY	3 cut(s)	58, 199, 532
Asp700I	GAANNNNTTC	1 cut(s)	236
AspS9I	GGNCC	1 cut(s)	283
AvaII	GGWCC	1 cut(s)	283
BauI	CACGAG	1 cut(s)	105
BbsI	GAAGAC	1 cut(s)	444
BbvI	GCAGC	1 cut(s)	627
BccI	CCATC	2 cut(s)	58, 349
BcoDI	GTCTC	1 cut(s)	168
BfaI	CTAG	4 cut(s)	389, 557, 578, 627
BfmI	CTRYAG	1 cut(s)	39
BfuAI	ACCTGC	1 cut(s)	46
BisI	GCNGC	2 cut(s)	613, 616
BlsI	GCNGC	2 cut(s)	614, 617
Bme18I	GGWCC	1 cut(s)	283
BmgT120I	GGNCC	1 cut(s)	283
BmiI	GGNNCC	1 cut(s)	285
BmsI	GCATC	1 cut(s)	61
BpiI	GAAGAC	1 cut(s)	444
BpmI	CTGGAG	1 cut(s)	192
BpuEI	CTTGAG	2 cut(s)	113, 580
BsaJI	CCNNGG	1 cut(s)	279
BseDI	CCNNGG	1 cut(s)	279
BseMII	CTCAG	1 cut(s)	460
BseRI	GAGGAG	1 cut(s)	473
BseXI	GCAGC	1 cut(s)	627
BsmAI	GTCTC	1 cut(s)	168
Bsp143I	GATC	3 cut(s)	63, 141, 588
BspACI	CCGC	2 cut(s)	612, 618
BspCNI	CTCAG	1 cut(s)	459
BspLI	GGNNCC	1 cut(s)	285
BspMAI	CTGCAG	1 cut(s)	43
BspMI	ACCTGC	1 cut(s)	46
BssECI	CCNNGG	1 cut(s)	279
BssMI	GATC	3 cut(s)	63, 141, 588
BssSI	CACGAG	1 cut(s)	105
Bst2BI	CACGAG	1 cut(s)	105
Bst4CI	ACNGT	3 cut(s)	168, 179, 195
Bst6I	CTCTTC	2 cut(s)	450, 537
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	4 cut(s)	422, 431, 446, 506
BstKTI	GATC	3 cut(s)	66, 144, 591
BstMAI	GTCTC	1 cut(s)	168
BstMBI	GATC	3 cut(s)	63, 141, 588
BstNSI	RCATGY	1 cut(s)	190
BstSFI	CTRYAG	1 cut(s)	39
BstV1I	GCAGC	1 cut(s)	627
BstV2I	GAAGAC	1 cut(s)	444
BtsIMutI	CAGTG	1 cut(s)	203
BveI	ACCTGC	1 cut(s)	46
Cac8I	GCNNGC	1 cut(s)	6
Cfr13I	GGNCC	1 cut(s)	283
Csp6I	GTAC	1 cut(s)	573
CviAII	CATG	1 cut(s)	187
CviJI	RGCY	4 cut(s)	319, 388, 503, 551
CviKI_1	RGCY	4 cut(s)	319, 388, 503, 551
CviQI	GTAC	1 cut(s)	573
DdeI	CTNAG	4 cut(s)	422, 431, 446, 506
DpnI	GATC	3 cut(s)	65, 143, 590
DpnII	GATC	3 cut(s)	63, 141, 588
Eam1104I	CTCTTC	2 cut(s)	450, 537
EarI	CTCTTC	2 cut(s)	450, 537
Eco47I	GGWCC	1 cut(s)	283
Eco57I	CTGAAG	1 cut(s)	312
EcoO109I	RGGNCCY	1 cut(s)	283
EcoRI	GAATTC	1 cut(s)	58
FaeI	CATG	1 cut(s)	190
FaiI	YATR	9 cut(s)	68, 78, 140, 158, 188, 211, 264, 477, 554
FalI	AAGNNNNNCTT	2 cut(s)	575, 607
FatI	CATG	1 cut(s)	186
FblI	GTMKAC	1 cut(s)	601
Fnu4HI	GCNGC	2 cut(s)	613, 616
Fsp4HI	GCNGC	2 cut(s)	613, 616
FspBI	CTAG	4 cut(s)	389, 557, 578, 627
GluI	GCNGC	2 cut(s)	613, 616
GsuI	CTGGAG	1 cut(s)	192
Hin1II	CATG	1 cut(s)	190
HinfI	GANTC	2 cut(s)	269, 275
Hpy166II	GTNNAC	2 cut(s)	575, 602
Hpy188I	TCNGA	5 cut(s)	231, 274, 280, 292, 454
Hpy188III	TCNNGA	2 cut(s)	130, 171
Hpy8I	GTNNAC	2 cut(s)	575, 602
HpyAV	CCTTC	2 cut(s)	297, 602
HpyCH4III	ACNGT	3 cut(s)	168, 179, 195
HpyCH4V	TGCA	3 cut(s)	8, 41, 104
HpyF3I	CTNAG	4 cut(s)	422, 431, 446, 506
Hsp92II	CATG	1 cut(s)	190
Kzo9I	GATC	3 cut(s)	63, 141, 588
LpnPI	CCDG	2 cut(s)	51, 156
Lsp1109I	GCAGC	1 cut(s)	627
LweI	GCATC	1 cut(s)	61
MaeI	CTAG	4 cut(s)	389, 557, 578, 627
MaeIII	GTNAC	1 cut(s)	189
MalI	GATC	3 cut(s)	65, 143, 590
MboI	GATC	3 cut(s)	63, 141, 588
MboII	GAAGA	9 cut(s)	305, 338, 449, 467, 533, 551, 554, 583, 595
MluCI	AATT	8 cut(s)	27, 58, 199, 233, 482, 512, 532, 621
MnlI	CCTC	5 cut(s)	274, 378, 406, 451, 490
MroXI	GAANNNNTTC	1 cut(s)	236
MseI	TTAA	5 cut(s)	182, 197, 306, 339, 515
MspA1I	CMGCKG	1 cut(s)	618
NdeII	GATC	3 cut(s)	63, 141, 588
NlaIII	CATG	1 cut(s)	190
NlaIV	GGNNCC	1 cut(s)	285
NmuCI	GTSAC	1 cut(s)	189
NspI	RCATGY	1 cut(s)	190
PdmI	GAANNNNTTC	1 cut(s)	236
PfeI	GAWTC	2 cut(s)	269, 275
PkrI	GCNGC	2 cut(s)	614, 617
PpuMI	RGGWCCY	1 cut(s)	283
Psp5II	RGGWCCY	1 cut(s)	283
PspN4I	GGNNCC	1 cut(s)	285
PspPI	GGNCC	1 cut(s)	283
PspPPI	RGGWCCY	1 cut(s)	283
PstI	CTGCAG	1 cut(s)	43
RsaI	GTAC	1 cut(s)	574
RsaNI	GTAC	1 cut(s)	573
SaqAI	TTAA	5 cut(s)	182, 197, 306, 339, 515
SatI	GCNGC	2 cut(s)	613, 616
Sau3AI	GATC	3 cut(s)	63, 141, 588
Sau96I	GGNCC	1 cut(s)	283
SetI	ASST	3 cut(s)	40, 321, 553
SfaNI	GCATC	1 cut(s)	61
SfcI	CTRYAG	1 cut(s)	39
SinI	GGWCC	1 cut(s)	283
SmlI	CTYRAG	2 cut(s)	128, 595
SmoI	CTYRAG	2 cut(s)	128, 595
Sse9I	AATT	8 cut(s)	27, 58, 199, 233, 482, 512, 532, 621
SsiI	CCGC	2 cut(s)	612, 618
SspMI	CTAG	4 cut(s)	389, 557, 578, 627
TaaI	ACNGT	3 cut(s)	168, 179, 195
TaqI	TCGA	2 cut(s)	62, 117
TasI	AATT	8 cut(s)	27, 58, 199, 233, 482, 512, 532, 621
TatI	WGTACW	1 cut(s)	572
TauI	GCSGC	1 cut(s)	615
TfiI	GAWTC	2 cut(s)	269, 275
Tru1I	TTAA	5 cut(s)	182, 197, 306, 339, 515
Tru9I	TTAA	5 cut(s)	182, 197, 306, 339, 515
TscAI	CASTG	1 cut(s)	210
TseFI	GTSAC	1 cut(s)	189
TseI	GCWGC	1 cut(s)	615
Tsp45I	GTSAC	1 cut(s)	189
TspDTI	ATGAA	6 cut(s)	39, 135, 214, 273, 339, 545
TspRI	CASTG	1 cut(s)	210
VpaK11BI	GGWCC	1 cut(s)	283
XapI	RAATTY	3 cut(s)	58, 199, 532
XceI	RCATGY	1 cut(s)	190
XmiI	GTMKAC	1 cut(s)	601
XmnI	GAANNNNTTC	1 cut(s)	236
XspI	CTAG	4 cut(s)	389, 557, 578, 627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.