Rmu_sc0004084.1_g000040

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004084.1
N/A
Physical Location & Seq
Reverse (-)
181032 .. 181298
267 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 267 bp
atgagtagcctgaacaaattggactttgctccattgcgaacaactggctctgaatatcacagatgggttcgtgatatccgccagcatctcaaggctgatggaatcttggatatgattctcgagcctagccaggacgtgataactgttgagcaagctcaagctttggaagcaaatagagcagccttagagttaaataaggcgaaagccatcatcctaatgactcggcatatggatgattcgctccagtacgagtatatgaatgaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

88

Amino Acids

10.17

Weight (kDa)

5.28

Isoelectric Point (pI)

61.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 79
AfaI GTAC 1 cut(s) 248
AjiI CACGTC 1 cut(s) 136
AjnI CCWGG 1 cut(s) 129
AluBI AGCT 2 cut(s) 155, 161
AluI AGCT 2 cut(s) 155, 161
Ama87I CYCGRG 1 cut(s) 119
ApeKI GCWGC 1 cut(s) 179
AvaI CYCGRG 1 cut(s) 119
BbvI GCAGC 1 cut(s) 191
BccI CCATC 3 cut(s) 57, 92, 215
BciT130I CCWGG 1 cut(s) 131
BfaI CTAG 1 cut(s) 126
BisI GCNGC 1 cut(s) 180
BlsI GCNGC 1 cut(s) 181
Bme1390I CCNGG 1 cut(s) 131
BmeT110I CYCGRG 1 cut(s) 119
BmgBI CACGTC 1 cut(s) 136
BmrFI CCNGG 1 cut(s) 131
BmsI GCATC 1 cut(s) 94
BpmI CTGGAG 1 cut(s) 227
BpuEI CTTGAG 2 cut(s) 74, 141
Bse1I ACTGG 2 cut(s) 49, 244
Bse3DI GCAATG 1 cut(s) 32
BseBI CCWGG 1 cut(s) 131
BseGI GGATG 2 cut(s) 210, 238
BseMI GCAATG 1 cut(s) 32
BseNI ACTGG 2 cut(s) 49, 244
BseXI GCAGC 1 cut(s) 191
BsiHKCI CYCGRG 1 cut(s) 119
BsoBI CYCGRG 1 cut(s) 119
BspACI CCGC 1 cut(s) 79
BsrDI GCAATG 1 cut(s) 32
BsrI ACTGG 2 cut(s) 49, 244
Bst2UI CCWGG 1 cut(s) 131
Bst4CI ACNGT 1 cut(s) 145
BstC8I GCNNGC 2 cut(s) 83, 153
BstDEI CTNAG 1 cut(s) 184
BstF5I GGATG 2 cut(s) 210, 238
BstMWI GCNNNNNNNGC 2 cut(s) 167, 176
BstNI CCWGG 1 cut(s) 131
BstSCI CCNGG 1 cut(s) 129
BstV1I GCAGC 1 cut(s) 191
BtrI CACGTC 1 cut(s) 136
BtsCI GGATG 2 cut(s) 210, 238
Cac8I GCNNGC 2 cut(s) 83, 153
Csp6I GTAC 1 cut(s) 247
CviJI RGCY 9 cut(s) 9, 48, 95, 124, 129, 155, 161, 182, 206
CviKI_1 RGCY 9 cut(s) 9, 48, 95, 124, 129, 155, 161, 182, 206
CviQI GTAC 1 cut(s) 247
DdeI CTNAG 1 cut(s) 184
EciI GGCGGA 1 cut(s) 68
Eco32I GATATC 1 cut(s) 76
Eco88I CYCGRG 1 cut(s) 119
EcoRII CCWGG 1 cut(s) 129
EcoRV GATATC 1 cut(s) 76
FaiI YATR 5 cut(s) 113, 228, 230, 255, 257
FauNDI CATATG 1 cut(s) 228
Fnu4HI GCNGC 1 cut(s) 180
FokI GGATG 2 cut(s) 197, 245
Fsp4HI GCNGC 1 cut(s) 180
FspBI CTAG 1 cut(s) 126
GluI GCNGC 1 cut(s) 180
GsuI CTGGAG 1 cut(s) 227
HindIII AAGCTT 1 cut(s) 159
HinfI GANTC 4 cut(s) 102, 115, 220, 236
Hpy188I TCNGA 1 cut(s) 52
Hpy188III TCNNGA 2 cut(s) 71, 119
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4IV ACGT 1 cut(s) 135
HpyF10VI GCNNNNNNNGC 2 cut(s) 167, 176
HpyF3I CTNAG 1 cut(s) 184
HpySE526I ACGT 1 cut(s) 135
LmnI GCTCC 2 cut(s) 34, 246
LpnPI CCDG 6 cut(s) 23, 30, 95, 116, 143, 257
Lsp1109I GCAGC 1 cut(s) 191
LweI GCATC 1 cut(s) 94
MaeI CTAG 1 cut(s) 126
MaeII ACGT 1 cut(s) 135
MluCI AATT 1 cut(s) 17
MlyI GAGTC 1 cut(s) 214
MseI TTAA 1 cut(s) 191
MslI CAYNNNNRTG 2 cut(s) 215, 231
MspR9I CCNGG 1 cut(s) 131
MvaI CCWGG 1 cut(s) 131
MwoI GCNNNNNNNGC 2 cut(s) 167, 176
NdeI CATATG 1 cut(s) 228
NmeAIII GCCGAG 1 cut(s) 202
PaeR7I CTCGAG 1 cut(s) 119
PfeI GAWTC 3 cut(s) 102, 115, 236
PkrI GCNGC 1 cut(s) 181
PleI GAGTC 1 cut(s) 214
PpsI GAGTC 1 cut(s) 214
Psp6I CCWGG 1 cut(s) 129
PspGI CCWGG 1 cut(s) 129
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
RseI CAYNNNNRTG 2 cut(s) 215, 231
SaqAI TTAA 1 cut(s) 191
SatI GCNGC 1 cut(s) 180
SchI GAGTC 1 cut(s) 214
ScrFI CCNGG 1 cut(s) 131
SetI ASST 3 cut(s) 138, 157, 163
SfaNI GCATC 1 cut(s) 94
Sfr274I CTCGAG 1 cut(s) 119
SlaI CTCGAG 1 cut(s) 119
SmiMI CAYNNNNRTG 2 cut(s) 215, 231
SmlI CTYRAG 3 cut(s) 89, 119, 156
SmoI CTYRAG 3 cut(s) 89, 119, 156
Sse9I AATT 1 cut(s) 17
SsiI CCGC 1 cut(s) 79
SspMI CTAG 1 cut(s) 126
StyD4I CCNGG 1 cut(s) 129
TaaI ACNGT 1 cut(s) 145
TaiI ACGT 1 cut(s) 138
TaqI TCGA 1 cut(s) 120
TasI AATT 1 cut(s) 17
TfiI GAWTC 3 cut(s) 102, 115, 236
Tru1I TTAA 1 cut(s) 191
Tru9I TTAA 1 cut(s) 191
TseI GCWGC 1 cut(s) 179
XhoI CTCGAG 1 cut(s) 119
XspI CTAG 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.