Rmu_sc0004103.1_g000011

Ribose-phosphate pyrophosphokinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004103.1
N/A
Physical Location & Seq
Reverse (-)
36232 .. 38872
2641 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 633 bp
atgaacttgattggcgatgtaaaaggaaaagttgcagtgatggtggatgatatgattgacactgctgggacaatctcaaaaggcgcagccctgttacatgaagagggggcaagggaagtctatgcatgttgtacccatgctgtgtttagccctcctgcaattgaaaggttatcgagtggcctgtttcaagaggtgattgtaacaaacacaatccctgttgcagagaagaattacttccctcagttgactatactttcagtagctaacctgttgggtgagaccatttggcgtgttcacgatgattcttctagtgttccctgtccggcggcggccgttgacggctccggcttcggcgtcatcgccattttgctggctgtcggactggcacttcaatgccttgggctgaggtcgggaggggaggtggctatggcttctggcatctgtggtagttcttctgtgcagggatggcgatccagcggaggcgattcgtgggcggttaggcgacggtgcggcttgcggccatcggggctgagcgctagatctgcagtggcttggcgctcgaggcggtgctggcttgtaacgaagcttgacggagcggctcatggcggggctggttcacggcggggatcgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00030 ko00230 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00230 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
Pribosyl_synth Pribosyltran_N

Protein Analysis

210

Amino Acids

21.81

Weight (kDa)

8.54

Isoelectric Point (pI)

56.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pribosyl_synth PF14572 1 - 103 4.8e-23 Phosphoribosyl synthetase-associated domain
Pribosyltran PF00156 4 - 47 6.7e-08 Phosphoribosyl transferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 596
AclWI GGATC 1 cut(s) 465
AcoI YGGCCR 2 cut(s) 330, 518
AcyI GRCGYC 1 cut(s) 354
AfaI GTAC 1 cut(s) 133
AfeI AGCGCT 1 cut(s) 535
AgsI TTSAA 3 cut(s) 164, 188, 392
AluBI AGCT 2 cut(s) 263, 586
AluI AGCT 2 cut(s) 263, 586
Alw26I GTCTC 1 cut(s) 272
AlwI GGATC 1 cut(s) 465
Ama87I CYCGRG 1 cut(s) 559
Aor51HI AGCGCT 1 cut(s) 535
AoxI GGCC 3 cut(s) 178, 330, 518
ApeKI GCWGC 1 cut(s) 86
Asp700I GAANNNNTTC 1 cut(s) 233
AspLEI GCGC 3 cut(s) 86, 536, 558
AsuHPI GGTGA 2 cut(s) 205, 287
AvaI CYCGRG 1 cut(s) 559
BbvCI CCTCAGC 1 cut(s) 404
BbvI GCAGC 1 cut(s) 98
BccI CCATC 3 cut(s) 34, 459, 529
BceAI ACGGC 2 cut(s) 317, 355
BcoDI GTCTC 1 cut(s) 272
BfaI CTAG 2 cut(s) 309, 537
BfmI CTRYAG 1 cut(s) 543
BfoI RGCGCY 2 cut(s) 537, 559
BglI GCCNNNNNGGC 1 cut(s) 526
BglII AGATCT 1 cut(s) 539
BisI GCNGC 6 cut(s) 87, 327, 330, 511, 518, 597
BlpI GCTNAGC 1 cut(s) 530
BlsI GCNGC 6 cut(s) 88, 328, 331, 512, 519, 598
BmeT110I CYCGRG 1 cut(s) 559
BmiI GGNNCC 1 cut(s) 343
BmsI GCATC 1 cut(s) 447
Bpu10I CCTNAGC 1 cut(s) 404
Bpu1102I GCTNAGC 1 cut(s) 530
BsaBI GATNNNNATC 1 cut(s) 469
BsaHI GRCGYC 1 cut(s) 354
BsaI GGTCTC 1 cut(s) 272
BsaJI CCNNGG 1 cut(s) 397
BsaXI ACNNNNNCTCC 2 cut(s) 405, 435
Bse1I ACTGG 1 cut(s) 387
Bse8I GATNNNNATC 1 cut(s) 469
BseDI CCNNGG 1 cut(s) 397
BseGI GGATG 2 cut(s) 52, 470
BseJI GATNNNNATC 1 cut(s) 469
BseMII CTCAG 3 cut(s) 254, 395, 521
BseNI ACTGG 1 cut(s) 387
BseX3I CGGCCG 1 cut(s) 330
BseXI GCAGC 1 cut(s) 98
BseYI CCCAGC 1 cut(s) 65
BsgI GTGCAG 1 cut(s) 479
Bsh1285I CGRYCG 1 cut(s) 333
BshFI GGCC 3 cut(s) 180, 332, 520
BsiEI CGRYCG 1 cut(s) 333
BsiHKCI CYCGRG 1 cut(s) 559
BsiSI CCGG 2 cut(s) 323, 345
BslFI GGGAC 1 cut(s) 82
BsmAI GTCTC 1 cut(s) 272
BsmFI GGGAC 1 cut(s) 82
BsnI GGCC 3 cut(s) 180, 332, 520
Bso31I GGTCTC 1 cut(s) 272
BsoBI CYCGRG 1 cut(s) 559
Bsp143I GATC 3 cut(s) 470, 539, 626
Bsp1720I GCTNAGC 1 cut(s) 530
BspANI GGCC 3 cut(s) 180, 332, 520
BspCNI CTCAG 3 cut(s) 253, 396, 522
BspLI GGNNCC 1 cut(s) 343
BspMAI CTGCAG 1 cut(s) 547
BspPI GGATC 1 cut(s) 465
BspTNI GGTCTC 1 cut(s) 272
BsrBI CCGCTC 1 cut(s) 596
BsrI ACTGG 1 cut(s) 387
BssECI CCNNGG 1 cut(s) 397
BssMI GATC 3 cut(s) 470, 539, 626
BssNI GRCGYC 1 cut(s) 354
BssT1I CCWWGG 1 cut(s) 397
Bst4CI ACNGT 1 cut(s) 507
Bst6I CTCTTC 1 cut(s) 96
BstACI GRCGYC 1 cut(s) 354
BstC8I GCNNGC 3 cut(s) 372, 515, 572
BstDEI CTNAG 3 cut(s) 240, 404, 530
BstF5I GGATG 2 cut(s) 52, 470
BstH2I RGCGCY 2 cut(s) 537, 559
BstHHI GCGC 3 cut(s) 86, 536, 558
BstKTI GATC 3 cut(s) 473, 542, 629
BstMAI GTCTC 1 cut(s) 272
BstMBI GATC 3 cut(s) 470, 539, 626
BstMCI CGRYCG 1 cut(s) 333
BstMWI GCNNNNNNNGC 5 cut(s) 466, 526, 542, 562, 571
BstNSI RCATGY 1 cut(s) 129
BstSFI CTRYAG 1 cut(s) 543
BstV1I GCAGC 1 cut(s) 98
BstX2I RGATCY 1 cut(s) 539
BstXI CCANNNNNNTGG 1 cut(s) 370
BstYI RGATCY 1 cut(s) 539
BstZI CGGCCG 1 cut(s) 330
BsuRI GGCC 3 cut(s) 180, 332, 520
BtgZI GCGATG 2 cut(s) 30, 343
BtsCI GGATG 2 cut(s) 52, 470
BtsI GCAGTG 3 cut(s) 42, 60, 552
BtsIMutI CAGTG 3 cut(s) 42, 60, 552
Cac8I GCNNGC 3 cut(s) 372, 515, 572
CfoI GCGC 3 cut(s) 86, 536, 558
CseI GACGC 1 cut(s) 343
Csp6I GTAC 1 cut(s) 132
CviAII CATG 4 cut(s) 98, 126, 137, 602
CviQI GTAC 1 cut(s) 132
DdeI CTNAG 3 cut(s) 240, 404, 530
DpnI GATC 3 cut(s) 472, 541, 628
DpnII GATC 3 cut(s) 470, 539, 626
EaeI YGGCCR 2 cut(s) 330, 518
EagI CGGCCG 1 cut(s) 330
Eam1104I CTCTTC 1 cut(s) 96
EarI CTCTTC 1 cut(s) 96
EclXI CGGCCG 1 cut(s) 330
Eco130I CCWWGG 1 cut(s) 397
Eco31I GGTCTC 1 cut(s) 272
Eco47III AGCGCT 1 cut(s) 535
Eco52I CGGCCG 1 cut(s) 330
Eco88I CYCGRG 1 cut(s) 559
EcoT14I CCWWGG 1 cut(s) 397
EcoT22I ATGCAT 1 cut(s) 127
ErhI CCWWGG 1 cut(s) 397
FaeI CATG 4 cut(s) 101, 129, 140, 605
FaiI YATR 8 cut(s) 53, 99, 123, 127, 138, 251, 428, 603
FalI AAGNNNNNCTT 2 cut(s) 218, 250
FaqI GGGAC 1 cut(s) 82
FatI CATG 4 cut(s) 97, 125, 136, 601
FauI CCCGC 2 cut(s) 599, 615
Fnu4HI GCNGC 6 cut(s) 87, 327, 330, 511, 518, 597
FokI GGATG 2 cut(s) 59, 477
Fsp4HI GCNGC 6 cut(s) 87, 327, 330, 511, 518, 597
FspBI CTAG 2 cut(s) 309, 537
GlaI GCGC 3 cut(s) 85, 535, 557
GluI GCNGC 6 cut(s) 87, 327, 330, 511, 518, 597
GsaI CCCAGC 1 cut(s) 69
HaeII RGCGCY 2 cut(s) 537, 559
HaeIII GGCC 3 cut(s) 180, 332, 520
HapII CCGG 2 cut(s) 323, 345
HgaI GACGC 1 cut(s) 343
HhaI GCGC 3 cut(s) 86, 536, 558
Hin1I GRCGYC 1 cut(s) 354
Hin1II CATG 4 cut(s) 101, 129, 140, 605
Hin6I GCGC 3 cut(s) 84, 534, 556
HinP1I GCGC 3 cut(s) 84, 534, 556
HincII GTYRAC 2 cut(s) 246, 337
HindII GTYRAC 2 cut(s) 246, 337
HindIII AAGCTT 1 cut(s) 584
HinfI GANTC 2 cut(s) 302, 485
HpaII CCGG 2 cut(s) 323, 345
HphI GGTGA 2 cut(s) 205, 287
Hpy166II GTNNAC 4 cut(s) 246, 295, 337, 617
Hpy188I TCNGA 1 cut(s) 380
Hpy188III TCNNGA 4 cut(s) 188, 296, 411, 630
Hpy8I GTNNAC 4 cut(s) 246, 295, 337, 617
Hpy99I CGWCG 1 cut(s) 507
HpyCH4III ACNGT 1 cut(s) 507
HpyCH4V TGCA 6 cut(s) 35, 125, 158, 221, 460, 545
HpyF10VI GCNNNNNNNGC 5 cut(s) 466, 526, 542, 562, 571
HpyF3I CTNAG 3 cut(s) 240, 404, 530
Hsp92I GRCGYC 1 cut(s) 354
Hsp92II CATG 4 cut(s) 101, 129, 140, 605
HspAI GCGC 3 cut(s) 84, 534, 556
Kzo9I GATC 3 cut(s) 470, 539, 626
LmnI GCTCC 2 cut(s) 347, 593
Lsp1109I GCAGC 1 cut(s) 98
LweI GCATC 1 cut(s) 447
MaeI CTAG 2 cut(s) 309, 537
MaeIII GTNAC 3 cut(s) 93, 199, 577
MalI GATC 3 cut(s) 472, 541, 628
MbiI CCGCTC 1 cut(s) 596
MboI GATC 3 cut(s) 470, 539, 626
MboII GAAGA 4 cut(s) 113, 238, 297, 444
MfeI CAATTG 1 cut(s) 159
MflI RGATCY 1 cut(s) 539
MluCI AATT 2 cut(s) 159, 229
MmeI TCCRAC 1 cut(s) 358
MnlI CCTC 9 cut(s) 97, 162, 184, 249, 399, 407, 412, 473, 555
Mph1103I ATGCAT 1 cut(s) 127
MroXI GAANNNNTTC 1 cut(s) 233
MslI CAYNNNNRTG 1 cut(s) 391
MspA1I CMGCKG 1 cut(s) 477
MspI CCGG 2 cut(s) 323, 345
MunI CAATTG 1 cut(s) 159
MwoI GCNNNNNNNGC 5 cut(s) 466, 526, 542, 562, 571
NdeII GATC 3 cut(s) 470, 539, 626
NlaIII CATG 4 cut(s) 101, 129, 140, 605
NlaIV GGNNCC 1 cut(s) 343
NsiI ATGCAT 1 cut(s) 127
NspI RCATGY 1 cut(s) 129
PaeR7I CTCGAG 1 cut(s) 559
PdmI GAANNNNTTC 1 cut(s) 233
PfeI GAWTC 2 cut(s) 302, 485
PkrI GCNGC 6 cut(s) 88, 328, 331, 512, 519, 598
PspFI CCCAGC 1 cut(s) 65
PspN4I GGNNCC 1 cut(s) 343
PspXI VCTCGAGB 1 cut(s) 559
PstI CTGCAG 1 cut(s) 547
PsuI RGATCY 1 cut(s) 539
RsaI GTAC 1 cut(s) 133
RsaNI GTAC 1 cut(s) 132
RseI CAYNNNNRTG 1 cut(s) 391
SatI GCNGC 6 cut(s) 87, 327, 330, 511, 518, 597
Sau3AI GATC 3 cut(s) 470, 539, 626
SetI ASST 7 cut(s) 170, 195, 265, 270, 410, 423, 588
SfaNI GCATC 1 cut(s) 447
SfcI CTRYAG 1 cut(s) 543
Sfr274I CTCGAG 1 cut(s) 559
SlaI CTCGAG 1 cut(s) 559
SmiMI CAYNNNNRTG 1 cut(s) 391
SmlI CTYRAG 1 cut(s) 559
SmoI CTYRAG 1 cut(s) 559
Sse9I AATT 2 cut(s) 159, 229
SspMI CTAG 2 cut(s) 309, 537
StyI CCWWGG 1 cut(s) 397
TaaI ACNGT 1 cut(s) 507
TaqI TCGA 2 cut(s) 173, 560
TasI AATT 2 cut(s) 159, 229
TauI GCSGC 5 cut(s) 329, 332, 513, 520, 599
TfiI GAWTC 2 cut(s) 302, 485
TscAI CASTG 3 cut(s) 42, 67, 552
TseI GCWGC 1 cut(s) 86
TspDTI ATGAA 2 cut(s) 17, 114
TspGWI ACGGA 1 cut(s) 606
TspRI CASTG 3 cut(s) 42, 67, 552
XceI RCATGY 1 cut(s) 129
XhoI CTCGAG 1 cut(s) 559
XmnI GAANNNNTTC 1 cut(s) 233
XspI CTAG 2 cut(s) 309, 537
Zsp2I ATGCAT 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.