Rmu_sc0004104.1_g000008

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004104.1
N/A
Physical Location & Seq
Reverse (-)
30534 .. 31047
514 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 297 bp
atgggcactcctcaacattctgatagtaccttcctcacagtgctcctacagggccaaattggtggcctccaagtcctccatgaaaatcagcgggtggatgttaccctagtcgttggagctctagtgttaatcttaaatgataagttcataagtgtcaatcacaaagtaccaagtaaggagttgacatcagacaagaatcttccaatttatcgagagaccaccattaaagattttgttgtgcactactatactaaagggttcaatggggtctcggcattggaatatttgaggccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

98

Amino Acids

10.97

Weight (kDa)

6.9

Isoelectric Point (pI)

27.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 1 - 57 4.2e-08 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 91
AfaI GTAC 2 cut(s) 28, 168
AgsI TTSAA 1 cut(s) 262
AluBI AGCT 1 cut(s) 119
AluI AGCT 1 cut(s) 119
Alw21I GWGCWC 3 cut(s) 45, 121, 243
Alw26I GTCTC 2 cut(s) 209, 274
Alw44I GTGCAC 1 cut(s) 239
AoxI GGCC 3 cut(s) 52, 64, 290
ApaLI GTGCAC 1 cut(s) 239
AspS9I GGNCC 1 cut(s) 52
BaeGI GKGCMC 2 cut(s) 8, 243
BanII GRGCYC 1 cut(s) 121
Bbv12I GWGCWC 3 cut(s) 45, 121, 243
BcoDI GTCTC 2 cut(s) 209, 274
BfaI CTAG 2 cut(s) 107, 122
BfmI CTRYAG 1 cut(s) 47
BmgT120I GGNCC 1 cut(s) 52
BsaI GGTCTC 2 cut(s) 209, 274
BsaXI ACNNNNNCTCC 2 cut(s) 108, 138
BseGI GGATG 1 cut(s) 103
BseSI GKGCMC 2 cut(s) 8, 243
BshFI GGCC 3 cut(s) 54, 66, 292
BsiHKAI GWGCWC 3 cut(s) 45, 121, 243
BsmAI GTCTC 2 cut(s) 209, 274
BsnI GGCC 3 cut(s) 54, 66, 292
Bso31I GGTCTC 2 cut(s) 209, 274
Bsp1286I GDGCHC 4 cut(s) 8, 45, 121, 243
BspACI CCGC 1 cut(s) 91
BspANI GGCC 3 cut(s) 54, 66, 292
BspTNI GGTCTC 2 cut(s) 209, 274
Bst4CI ACNGT 1 cut(s) 40
BstF5I GGATG 1 cut(s) 103
BstMAI GTCTC 2 cut(s) 209, 274
BstSFI CTRYAG 1 cut(s) 47
BstSLI GKGCMC 2 cut(s) 8, 243
BstXI CCANNNNNNTGG 1 cut(s) 62
BsuRI GGCC 3 cut(s) 54, 66, 292
BtsCI GGATG 1 cut(s) 103
BtsIMutI CAGTG 1 cut(s) 45
Cfr13I GGNCC 1 cut(s) 52
Csp6I GTAC 2 cut(s) 27, 167
CviAII CATG 1 cut(s) 80
CviJI RGCY 4 cut(s) 54, 66, 119, 292
CviKI_1 RGCY 4 cut(s) 54, 66, 119, 292
CviQI GTAC 2 cut(s) 27, 167
Ecl136II GAGCTC 1 cut(s) 119
Eco147I AGGCCT 1 cut(s) 292
Eco24I GRGCYC 1 cut(s) 121
Eco31I GGTCTC 2 cut(s) 209, 274
Eco53kI GAGCTC 1 cut(s) 119
EcoICRI GAGCTC 1 cut(s) 119
EcoT38I GRGCYC 1 cut(s) 121
FaeI CATG 1 cut(s) 83
FaiI YATR 3 cut(s) 81, 149, 249
FatI CATG 1 cut(s) 79
FauI CCCGC 1 cut(s) 84
FokI GGATG 1 cut(s) 110
FriOI GRGCYC 1 cut(s) 121
FspBI CTAG 2 cut(s) 107, 122
HaeIII GGCC 3 cut(s) 54, 66, 292
Hin1II CATG 1 cut(s) 83
HincII GTYRAC 1 cut(s) 183
HindII GTYRAC 1 cut(s) 183
HinfI GANTC 1 cut(s) 196
Hpy166II GTNNAC 2 cut(s) 183, 241
Hpy188I TCNGA 2 cut(s) 22, 190
Hpy188III TCNNGA 1 cut(s) 212
Hpy8I GTNNAC 2 cut(s) 183, 241
HpyAV CCTTC 1 cut(s) 40
HpyCH4III ACNGT 1 cut(s) 40
HpyCH4V TGCA 1 cut(s) 241
Hsp92II CATG 1 cut(s) 83
LmnI GCTCC 2 cut(s) 48, 116
LpnPI CCDG 1 cut(s) 35
MaeI CTAG 2 cut(s) 107, 122
MaeIII GTNAC 1 cut(s) 100
MboII GAAGA 1 cut(s) 191
MhlI GDGCHC 4 cut(s) 8, 45, 121, 243
MluCI AATT 2 cut(s) 57, 204
MmeI TCCRAC 1 cut(s) 94
MnlI CCTC 5 cut(s) 21, 44, 77, 86, 282
MseI TTAA 3 cut(s) 128, 134, 225
MspA1I CMGCKG 1 cut(s) 91
NlaIII CATG 1 cut(s) 83
NmeAIII GCCGAG 1 cut(s) 251
PceI AGGCCT 1 cut(s) 292
PfeI GAWTC 1 cut(s) 196
Psp124BI GAGCTC 1 cut(s) 121
PspPI GGNCC 1 cut(s) 52
RsaI GTAC 2 cut(s) 28, 168
RsaNI GTAC 2 cut(s) 27, 167
SacI GAGCTC 1 cut(s) 121
SaqAI TTAA 3 cut(s) 128, 134, 225
Sau96I GGNCC 1 cut(s) 52
SduI GDGCHC 4 cut(s) 8, 45, 121, 243
SetI ASST 2 cut(s) 32, 121
SfcI CTRYAG 1 cut(s) 47
Sse9I AATT 2 cut(s) 57, 204
SseBI AGGCCT 1 cut(s) 292
SsiI CCGC 1 cut(s) 91
SspI AATATT 1 cut(s) 284
SspMI CTAG 2 cut(s) 107, 122
SstI GAGCTC 1 cut(s) 121
StuI AGGCCT 1 cut(s) 292
TaaI ACNGT 1 cut(s) 40
TaqI TCGA 1 cut(s) 211
TasI AATT 2 cut(s) 57, 204
TfiI GAWTC 1 cut(s) 196
Tru1I TTAA 3 cut(s) 128, 134, 225
Tru9I TTAA 3 cut(s) 128, 134, 225
TscAI CASTG 1 cut(s) 45
TspDTI ATGAA 2 cut(s) 96, 136
TspRI CASTG 1 cut(s) 45
VneI GTGCAC 1 cut(s) 239
XspI CTAG 2 cut(s) 107, 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.