Rmu_sc0004119.1_g000001

Alpha-1,3 1,6-mannosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004119.1
N/A
Physical Location & Seq
Reverse (-)
2 .. 793
792 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 207 bp
atggcgaagagaggaggaagctcaacgttgaacgtcgctgttattcatcccgatctgggtataggaggagctgaaagactaattgtggatgcggctgttgagctcgcatcgcatggccataaagttcacgtctttacctcacaccatgataaaaatcgatgctttgaggagaccatctctggtgcctttcctgttactgtgtacggt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00510 ko00513 ko01100 map00510 map00513 map01100
Pfam Domains
Protein Families
Glyco_transf_4 Glycos_transf_1

Protein Analysis

69

Amino Acids

7.31

Weight (kDa)

6.57

Isoelectric Point (pI)

20.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_4 PF13439 21 - 57 1.7e-06 Glycosyltransferase Family 4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 182
AciI CCGC 1 cut(s) 92
AclI AACGTT 1 cut(s) 26
AcoI YGGCCR 1 cut(s) 115
AfaI GTAC 1 cut(s) 203
AfiI CCNNNNNNNGG 1 cut(s) 56
AgsI TTSAA 1 cut(s) 31
AjiI CACGTC 1 cut(s) 130
AluBI AGCT 3 cut(s) 21, 71, 103
AluI AGCT 3 cut(s) 21, 71, 103
Alw21I GWGCWC 1 cut(s) 105
Alw26I GTCTC 1 cut(s) 164
AoxI GGCC 1 cut(s) 115
BalI TGGCCA 1 cut(s) 117
BanI GGYRCC 1 cut(s) 182
BanII GRGCYC 1 cut(s) 105
Bbv12I GWGCWC 1 cut(s) 105
BccI CCATC 1 cut(s) 182
BcoDI GTCTC 1 cut(s) 164
BisI GCNGC 1 cut(s) 93
BlsI GCNGC 1 cut(s) 94
BmgBI CACGTC 1 cut(s) 130
BmiI GGNNCC 1 cut(s) 184
BmsI GCATC 3 cut(s) 79, 116, 149
BplI GAGNNNNNCTC 2 cut(s) 161, 193
Bsa29I ATCGAT 1 cut(s) 157
BsaBI GATNNNNATC 1 cut(s) 153
BsaI GGTCTC 1 cut(s) 164
Bsc4I CCNNNNNNNGG 1 cut(s) 56
Bse8I GATNNNNATC 1 cut(s) 153
BseCI ATCGAT 1 cut(s) 157
BseGI GGATG 2 cut(s) 46, 94
BseJI GATNNNNATC 1 cut(s) 153
BseLI CCNNNNNNNGG 1 cut(s) 56
BseRI GAGGAG 3 cut(s) 27, 81, 182
BshFI GGCC 1 cut(s) 117
BshNI GGYRCC 1 cut(s) 182
BshVI ATCGAT 1 cut(s) 157
BsiHKAI GWGCWC 1 cut(s) 105
BslI CCNNNNNNNGG 1 cut(s) 56
BsmAI GTCTC 1 cut(s) 164
BsnI GGCC 1 cut(s) 117
Bso31I GGTCTC 1 cut(s) 164
Bsp1286I GDGCHC 1 cut(s) 105
Bsp143I GATC 1 cut(s) 52
BspACI CCGC 1 cut(s) 92
BspANI GGCC 1 cut(s) 117
BspDI ATCGAT 1 cut(s) 157
BspLI GGNNCC 1 cut(s) 184
BspT107I GGYRCC 1 cut(s) 182
BspTNI GGTCTC 1 cut(s) 164
BssMI GATC 1 cut(s) 52
Bst4CI ACNGT 2 cut(s) 199, 206
Bst6I CTCTTC 1 cut(s) 2
BstC8I GCNNGC 1 cut(s) 105
BstF5I GGATG 2 cut(s) 46, 94
BstKTI GATC 1 cut(s) 55
BstMAI GTCTC 1 cut(s) 164
BstMBI GATC 1 cut(s) 52
BstMWI GCNNNNNNNGC 1 cut(s) 109
Bsu15I ATCGAT 1 cut(s) 157
BsuRI GGCC 1 cut(s) 117
BsuTUI ATCGAT 1 cut(s) 157
BtgZI GCGATG 1 cut(s) 93
BtrI CACGTC 1 cut(s) 130
BtsCI GGATG 2 cut(s) 46, 94
Cac8I GCNNGC 1 cut(s) 105
ClaI ATCGAT 1 cut(s) 157
Csp6I GTAC 1 cut(s) 202
CviAII CATG 2 cut(s) 113, 146
CviJI RGCY 5 cut(s) 21, 71, 95, 103, 117
CviKI_1 RGCY 5 cut(s) 21, 71, 95, 103, 117
CviQI GTAC 1 cut(s) 202
DpnI GATC 1 cut(s) 54
DpnII GATC 1 cut(s) 52
EaeI YGGCCR 1 cut(s) 115
Eam1104I CTCTTC 1 cut(s) 2
EarI CTCTTC 1 cut(s) 2
Ecl136II GAGCTC 1 cut(s) 103
Eco24I GRGCYC 1 cut(s) 105
Eco31I GGTCTC 1 cut(s) 164
Eco53kI GAGCTC 1 cut(s) 103
EcoICRI GAGCTC 1 cut(s) 103
EcoT38I GRGCYC 1 cut(s) 105
FaeI CATG 2 cut(s) 116, 149
FaiI YATR 4 cut(s) 62, 114, 120, 147
FatI CATG 2 cut(s) 112, 145
Fnu4HI GCNGC 1 cut(s) 93
FokI GGATG 2 cut(s) 33, 101
FriOI GRGCYC 1 cut(s) 105
Fsp4HI GCNGC 1 cut(s) 93
GluI GCNGC 1 cut(s) 93
HaeIII GGCC 1 cut(s) 117
Hin1II CATG 2 cut(s) 116, 149
Hpy166II GTNNAC 2 cut(s) 127, 202
Hpy188III TCNNGA 1 cut(s) 50
Hpy8I GTNNAC 2 cut(s) 127, 202
Hpy99I CGWCG 1 cut(s) 38
HpyCH4III ACNGT 2 cut(s) 199, 206
HpyCH4IV ACGT 3 cut(s) 26, 33, 129
HpyF10VI GCNNNNNNNGC 1 cut(s) 109
HpySE526I ACGT 3 cut(s) 26, 33, 129
Hsp92II CATG 2 cut(s) 116, 149
Kzo9I GATC 1 cut(s) 52
LmnI GCTCC 1 cut(s) 68
LpnPI CCDG 2 cut(s) 41, 165
LweI GCATC 3 cut(s) 79, 116, 149
MaeII ACGT 3 cut(s) 26, 33, 129
MaeIII GTNAC 1 cut(s) 193
MalI GATC 1 cut(s) 54
MboI GATC 1 cut(s) 52
MboII GAAGA 1 cut(s) 19
MhlI GDGCHC 1 cut(s) 105
MlsI TGGCCA 1 cut(s) 117
MluCI AATT 1 cut(s) 81
MluNI TGGCCA 1 cut(s) 117
MnlI CCTC 5 cut(s) 5, 8, 59, 148, 160
Mox20I TGGCCA 1 cut(s) 117
MscI TGGCCA 1 cut(s) 117
Msp20I TGGCCA 1 cut(s) 117
MwoI GCNNNNNNNGC 1 cut(s) 109
NdeII GATC 1 cut(s) 52
NlaIII CATG 2 cut(s) 116, 149
NlaIV GGNNCC 1 cut(s) 184
PkrI GCNGC 1 cut(s) 94
Psp124BI GAGCTC 1 cut(s) 105
Psp1406I AACGTT 1 cut(s) 26
PspN4I GGNNCC 1 cut(s) 184
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
SacI GAGCTC 1 cut(s) 105
SatI GCNGC 1 cut(s) 93
Sau3AI GATC 1 cut(s) 52
SduI GDGCHC 1 cut(s) 105
SetI ASST 7 cut(s) 23, 29, 36, 73, 105, 132, 140
SfaNI GCATC 3 cut(s) 79, 116, 149
SgeI CNNG 8 cut(s) 62, 68, 116, 125, 140, 158, 192, 203
Sse9I AATT 1 cut(s) 81
SsiI CCGC 1 cut(s) 92
SstI GAGCTC 1 cut(s) 105
TaaI ACNGT 2 cut(s) 199, 206
TaiI ACGT 3 cut(s) 29, 36, 132
TaqI TCGA 1 cut(s) 157
TasI AATT 1 cut(s) 81
TauI GCSGC 1 cut(s) 95
TspDTI ATGAA 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.