Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004128.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 939

Gene Structure 938 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

atgaattgcccgagaagtgtgtggatagtggcggctgtgctggggctgagtctggggtttagctcggctggagatatagttcaccatgataatattgctccaaagagacctggttgtgaaaacgacttcgttctggtaaaggttccgacttggatcaacggtgtagaagccgacgagtatgttggtgtcggggctcgattt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005798 GO:0012505 GO:0016020 GO:0016021 GO:0030176 GO:0030660 GO:0031090 GO:0031224 GO:0031227 GO:0031410 GO:0031982 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071458 GO:0071556 GO:0097708 GO:0098552 GO:0098553 GO:0098554 GO:0098562 GO:0098588 GO:0098805 GO:0098827 GO:0098852

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA Peptidase_A22B

Protein Analysis

67

Amino Acids

7.2

Weight (kDa)

5.43

Isoelectric Point (pI)

25.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	32
AclWI	GGATC	1 cut(s)	161
AjnI	CCWGG	1 cut(s)	109
AloI	GAACNNNNNNTCC	2 cut(s)	63, 95
AluBI	AGCT	1 cut(s)	63
AluI	AGCT	1 cut(s)	63
Alw26I	GTCTC	1 cut(s)	100
AlwI	GGATC	1 cut(s)	161
Ama87I	CYCGRG	1 cut(s)	10
AsuHPI	GGTGA	1 cut(s)	74
AvaI	CYCGRG	1 cut(s)	10
BanII	GRGCYC	1 cut(s)	196
BciT130I	CCWGG	1 cut(s)	111
BcoDI	GTCTC	1 cut(s)	100
BisI	GCNGC	1 cut(s)	33
BlsI	GCNGC	1 cut(s)	34
Bme1390I	CCNGG	1 cut(s)	111
BmeT110I	CYCGRG	1 cut(s)	10
BmiI	GGNNCC	1 cut(s)	144
BmrFI	CCNGG	1 cut(s)	111
BpmI	CTGGAG	1 cut(s)	90
BsaI	GGTCTC	1 cut(s)	100
BsaXI	ACNNNNNCTCC	2 cut(s)	63, 93
BseBI	CCWGG	1 cut(s)	111
BseMII	CTCAG	1 cut(s)	38
BseYI	CCCAGC	1 cut(s)	40
BsiHKCI	CYCGRG	1 cut(s)	10
BsmAI	GTCTC	1 cut(s)	100
Bso31I	GGTCTC	1 cut(s)	100
BsoBI	CYCGRG	1 cut(s)	10
Bsp1286I	GDGCHC	1 cut(s)	196
Bsp143I	GATC	1 cut(s)	153
BspACI	CCGC	1 cut(s)	32
BspCNI	CTCAG	1 cut(s)	39
BspLI	GGNNCC	1 cut(s)	144
BspPI	GGATC	1 cut(s)	161
BspTNI	GGTCTC	1 cut(s)	100
BssMI	GATC	1 cut(s)	153
Bst2UI	CCWGG	1 cut(s)	111
Bst4CI	ACNGT	1 cut(s)	161
BstDEI	CTNAG	1 cut(s)	47
BstKTI	GATC	1 cut(s)	156
BstMAI	GTCTC	1 cut(s)	100
BstMBI	GATC	1 cut(s)	153
BstNI	CCWGG	1 cut(s)	111
BstSCI	CCNGG	1 cut(s)	109
CsiI	ACCWGGT	1 cut(s)	109
CviAII	CATG	1 cut(s)	86
CviJI	RGCY	6 cut(s)	35, 46, 63, 68, 170, 194
CviKI_1	RGCY	6 cut(s)	35, 46, 63, 68, 170, 194
DdeI	CTNAG	1 cut(s)	47
DpnI	GATC	1 cut(s)	155
DpnII	GATC	1 cut(s)	153
Eco24I	GRGCYC	1 cut(s)	196
Eco31I	GGTCTC	1 cut(s)	100
Eco88I	CYCGRG	1 cut(s)	10
EcoRII	CCWGG	1 cut(s)	109
EcoT38I	GRGCYC	1 cut(s)	196
FaeI	CATG	1 cut(s)	89
FaiI	YATR	3 cut(s)	77, 87, 180
FatI	CATG	1 cut(s)	85
Fnu4HI	GCNGC	1 cut(s)	33
FriOI	GRGCYC	1 cut(s)	196
Fsp4HI	GCNGC	1 cut(s)	33
GluI	GCNGC	1 cut(s)	33
GsaI	CCCAGC	1 cut(s)	44
GsuI	CTGGAG	1 cut(s)	90
Hin1II	CATG	1 cut(s)	89
HinfI	GANTC	1 cut(s)	49
HphI	GGTGA	1 cut(s)	74
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	1 cut(s)	147
Hpy8I	GTNNAC	1 cut(s)	82
Hpy99I	CGWCG	1 cut(s)	176
HpyCH4III	ACNGT	1 cut(s)	161
HpyF3I	CTNAG	1 cut(s)	47
Hsp92II	CATG	1 cut(s)	89
Kzo9I	GATC	1 cut(s)	153
LmnI	GCTCC	1 cut(s)	103
LpnPI	CCDG	6 cut(s)	26, 38, 54, 96, 119, 123
MabI	ACCWGGT	1 cut(s)	109
MalI	GATC	1 cut(s)	155
MboI	GATC	1 cut(s)	153
MhlI	GDGCHC	1 cut(s)	196
MluCI	AATT	1 cut(s)	4
MlyI	GAGTC	1 cut(s)	58
MmeI	TCCRAC	1 cut(s)	170
MspR9I	CCNGG	1 cut(s)	111
MvaI	CCWGG	1 cut(s)	111
NdeII	GATC	1 cut(s)	153
NlaIII	CATG	1 cut(s)	89
NlaIV	GGNNCC	1 cut(s)	144
NmeAIII	GCCGAG	1 cut(s)	44
PkrI	GCNGC	1 cut(s)	34
PleI	GAGTC	1 cut(s)	57
PpsI	GAGTC	1 cut(s)	57
Psp6I	CCWGG	1 cut(s)	109
PspFI	CCCAGC	1 cut(s)	40
PspGI	CCWGG	1 cut(s)	109
PspN4I	GGNNCC	1 cut(s)	144
SatI	GCNGC	1 cut(s)	33
Sau3AI	GATC	1 cut(s)	153
SchI	GAGTC	1 cut(s)	58
ScrFI	CCNGG	1 cut(s)	111
SduI	GDGCHC	1 cut(s)	196
SetI	ASST	3 cut(s)	65, 112, 144
SexAI	ACCWGGT	1 cut(s)	109
Sse9I	AATT	1 cut(s)	4
SsiI	CCGC	1 cut(s)	32
SspI	AATATT	1 cut(s)	94
StyD4I	CCNGG	1 cut(s)	109
TaaI	ACNGT	1 cut(s)	161
TaqI	TCGA	1 cut(s)	196
TasI	AATT	1 cut(s)	4
TauI	GCSGC	1 cut(s)	35
TspDTI	ATGAA	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.