Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004140.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

112217 .. 113652

Gene Structure 1436 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004140.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

atgcatcagggccgtcgaaaccgaaacgccctcaaccataggatcgctacacgtggcctacacattcccccatttcctgaagccctggcagaagaagggacgggcatttattgcacaacccagtctgccccacgtggccgacatgcaacgcctaccccatcgggtatccgagccaagccccctctctaccccattgggtaccggaggctcaaattttctaccccatcgggtatcggagccaagccctctctctaccccattgggtaccggaggcacaaattttctaccccatcgggtatcagagccaagccctctctctaccccattgggtaccggaggctcaaattttctaccccatcgggtatccgagccaagccctctctctaccccattgggtaccggatgctcaaattctccacctcatccagtcccagggactcaacctcatcttgtcccaatgtggcttacctacagcgtagcccgctcaagatttctcttctgcgggaacttgggggactacctataggcacactaccccatcggtactcccaggtactacgccatgggccaggttcacgccccaccatggcgggcctcacatgggatgccaccctgggcacccagggcccggggcaaggccagcacaacccatctatttacaccacaagagggctgatatggcatcagaagaacctgtgtcccacatcgaggataggggagactccattcccatgcttgagtataaagacattagcacaaccactttttacggtggcagtgaagaagctaaattttgtggtacaagatagtgagaaggaattcaagacggaactgaacataattggtcagacacatcacaagaatctagttagacttgttggatattgtgacgagggacaagagcggttactagtatatgagttcttgagcaatggcacattaccaaactttctttttgcttatacaaaaccaagttggaagcaaaggattgatattgcttatggagttgctaaaggacttatgtacttacatgaagaatgcagcacccagatcatccattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

353

Amino Acids

39.39

Weight (kDa)

10.19

Isoelectric Point (pI)

46.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	4 cut(s)	198, 264, 330, 396
AccB1I	GGYRCC	5 cut(s)	198, 264, 330, 396, 617
AccBSI	CCGCTC	2 cut(s)	484, 904
AciI	CCGC	4 cut(s)	482, 502, 590, 904
AclWI	GGATC	1 cut(s)	50
AcoI	YGGCCR	1 cut(s)	136
AcsI	RAATTY	6 cut(s)	212, 278, 344, 410, 790, 818
AcuI	CTGAAG	1 cut(s)	99
AcvI	CACGTG	2 cut(s)	53, 134
AfaI	GTAC	8 cut(s)	200, 266, 332, 398, 545, 555, 801, 1025
AfiI	CCNNNNNNNGG	7 cut(s)	432, 586, 601, 628, 635, 669, 708
AflIII	ACRYGT	1 cut(s)	50
AgsI	TTSAA	1 cut(s)	823
AhlI	ACTAGT	1 cut(s)	910
AjnI	CCWGG	6 cut(s)	84, 431, 549, 568, 612, 621
AluBI	AGCT	1 cut(s)	787
AluI	AGCT	1 cut(s)	787
Alw26I	GTCTC	1 cut(s)	713
AlwI	GGATC	1 cut(s)	50
Ama87I	CYCGRG	1 cut(s)	628
AoxI	GGCC	7 cut(s)	10, 55, 136, 566, 592, 625, 637
ApaI	GGGCCC	1 cut(s)	629
ApeKI	GCWGC	1 cut(s)	1041
ApoI	RAATTY	6 cut(s)	212, 278, 344, 410, 790, 818
Asp700I	GAANNNNTTC	1 cut(s)	818
Asp718I	GGTACC	4 cut(s)	198, 264, 330, 396
AspS9I	GGNCC	5 cut(s)	10, 566, 592, 625, 626
AsuC2I	CCSGG	2 cut(s)	629, 630
AvaI	CYCGRG	1 cut(s)	628
BaeGI	GKGCMC	2 cut(s)	620, 629
BanI	GGYRCC	5 cut(s)	198, 264, 330, 396, 617
BanII	GRGCYC	1 cut(s)	629
BbrPI	CACGTG	2 cut(s)	53, 134
BbvI	GCAGC	1 cut(s)	1053
BccI	CCATC	6 cut(s)	166, 232, 298, 364, 546, 658
BciT130I	CCWGG	6 cut(s)	86, 433, 551, 570, 614, 623
BciVI	GTATCC	2 cut(s)	176, 374
BcnI	CCSGG	2 cut(s)	629, 630
BcoDI	GTCTC	1 cut(s)	713
BcuI	ACTAGT	1 cut(s)	910
BfaI	CTAG	2 cut(s)	866, 911
BfmI	CTRYAG	2 cut(s)	470, 522
BfuI	GTATCC	2 cut(s)	176, 374
BisI	GCNGC	1 cut(s)	1042
BlsI	GCNGC	1 cut(s)	1043
Bme1390I	CCNGG	8 cut(s)	86, 433, 551, 570, 614, 623, 629, 630
BmeT110I	CYCGRG	1 cut(s)	628
BmgT120I	GGNCC	5 cut(s)	10, 566, 592, 625, 626
BmiI	GGNNCC	7 cut(s)	200, 238, 266, 332, 398, 619, 627
BmrFI	CCNGG	8 cut(s)	86, 433, 551, 570, 614, 623, 629, 630
BmrI	ACTGGG	1 cut(s)	115
BmsI	GCATC	4 cut(s)	13, 393, 595, 691
BmuI	ACTGGG	1 cut(s)	115
BpuEI	CTTGAG	3 cut(s)	470, 757, 946
BpuMI	CCSGG	2 cut(s)	629, 630
BsaAI	YACGTR	2 cut(s)	53, 134
BsaWI	WCCGGW	4 cut(s)	201, 267, 333, 399
Bsc4I	CCNNNNNNNGG	7 cut(s)	432, 586, 601, 628, 635, 669, 708
Bse1I	ACTGG	2 cut(s)	121, 426
Bse3DI	GCAATG	1 cut(s)	937
BseBI	CCWGG	6 cut(s)	86, 433, 551, 570, 614, 623
BseGI	GGATG	4 cut(s)	408, 422, 610, 1053
BseLI	CCNNNNNNNGG	7 cut(s)	432, 586, 601, 628, 635, 669, 708
BseMI	GCAATG	1 cut(s)	937
BseNI	ACTGG	2 cut(s)	121, 426
BseSI	GKGCMC	2 cut(s)	620, 629
BseXI	GCAGC	1 cut(s)	1053
BshFI	GGCC	7 cut(s)	12, 57, 138, 568, 594, 627, 639
BshNI	GGYRCC	5 cut(s)	198, 264, 330, 396, 617
BsiHKCI	CYCGRG	1 cut(s)	628
BsiSI	CCGG	5 cut(s)	202, 268, 334, 400, 629
BslFI	GGGAC	7 cut(s)	112, 414, 438, 449, 528, 684, 909
BslI	CCNNNNNNNGG	7 cut(s)	432, 586, 601, 628, 635, 669, 708
BsmAI	GTCTC	1 cut(s)	713
BsmFI	GGGAC	7 cut(s)	112, 414, 438, 449, 528, 684, 909
BsmI	GAATGC	1 cut(s)	1043
BsnI	GGCC	7 cut(s)	12, 57, 138, 568, 594, 627, 639
BsoBI	CYCGRG	1 cut(s)	628
Bsp120I	GGGCCC	1 cut(s)	625
Bsp1286I	GDGCHC	2 cut(s)	620, 629
Bsp143I	GATC	2 cut(s)	42, 1050
Bsp19I	CCATGG	2 cut(s)	562, 585
BspACI	CCGC	4 cut(s)	482, 502, 590, 904
BspANI	GGCC	7 cut(s)	12, 57, 138, 568, 594, 627, 639
BspLI	GGNNCC	7 cut(s)	200, 238, 266, 332, 398, 619, 627
BspPI	GGATC	1 cut(s)	50
BspT107I	GGYRCC	5 cut(s)	198, 264, 330, 396, 617
BsrBI	CCGCTC	2 cut(s)	484, 904
BsrDI	GCAATG	1 cut(s)	937
BsrI	ACTGG	2 cut(s)	121, 426
BssMI	GATC	2 cut(s)	42, 1050
BssT1I	CCWWGG	2 cut(s)	562, 585
Bst2UI	CCWGG	6 cut(s)	86, 433, 551, 570, 614, 623
Bst4CI	ACNGT	1 cut(s)	772
Bst6I	CTCTTC	1 cut(s)	501
BstAPI	GCANNNNNTGC	1 cut(s)	111
BstBAI	YACGTR	2 cut(s)	53, 134
BstC8I	GCNNGC	3 cut(s)	482, 592, 641
BstDSI	CCRYGG	2 cut(s)	562, 585
BstF5I	GGATG	4 cut(s)	408, 422, 610, 1053
BstKTI	GATC	2 cut(s)	45, 1053
BstMAI	GTCTC	1 cut(s)	713
BstMBI	GATC	2 cut(s)	42, 1050
BstMWI	GCNNNNNNNGC	5 cut(s)	111, 481, 624, 640, 679
BstNI	CCWGG	6 cut(s)	86, 433, 551, 570, 614, 623
BstNSI	RCATGY	1 cut(s)	146
BstSCI	CCNGG	8 cut(s)	84, 431, 549, 568, 612, 621, 627, 628
BstSFI	CTRYAG	2 cut(s)	470, 522
BstSLI	GKGCMC	2 cut(s)	620, 629
BstV1I	GCAGC	1 cut(s)	1053
BsuI	GTATCC	2 cut(s)	176, 374
BsuRI	GGCC	7 cut(s)	12, 57, 138, 568, 594, 627, 639
BtgI	CCRYGG	2 cut(s)	562, 585
BtsCI	GGATG	4 cut(s)	408, 422, 610, 1053
BtsI	GCAGTG	1 cut(s)	783
BtsIMutI	CAGTG	1 cut(s)	783
Cac8I	GCNNGC	3 cut(s)	482, 592, 641
Cfr13I	GGNCC	5 cut(s)	10, 566, 592, 625, 626
Cfr9I	CCCGGG	1 cut(s)	628
Csp6I	GTAC	8 cut(s)	199, 265, 331, 397, 544, 554, 800, 1024
CviAII	CATG	6 cut(s)	143, 563, 586, 600, 732, 1031
CviQI	GTAC	8 cut(s)	199, 265, 331, 397, 544, 554, 800, 1024
DpnI	GATC	2 cut(s)	44, 1052
DpnII	GATC	2 cut(s)	42, 1050
EaeI	YGGCCR	1 cut(s)	136
Eam1104I	CTCTTC	1 cut(s)	501
EarI	CTCTTC	1 cut(s)	501
Eco130I	CCWWGG	2 cut(s)	562, 585
Eco24I	GRGCYC	1 cut(s)	629
Eco57I	CTGAAG	1 cut(s)	99
Eco72I	CACGTG	2 cut(s)	53, 134
Eco88I	CYCGRG	1 cut(s)	628
EcoO109I	RGGNCCY	1 cut(s)	625
EcoRI	GAATTC	1 cut(s)	818
EcoRII	CCWGG	6 cut(s)	84, 431, 549, 568, 612, 621
EcoT14I	CCWWGG	2 cut(s)	562, 585
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	629
ErhI	CCWWGG	2 cut(s)	562, 585
FaeI	CATG	6 cut(s)	146, 566, 589, 603, 735, 1034
FaqI	GGGAC	7 cut(s)	112, 414, 438, 449, 528, 684, 909
FatI	CATG	6 cut(s)	142, 562, 585, 599, 731, 1030
FauI	CCCGC	3 cut(s)	489, 495, 583
Fnu4HI	GCNGC	1 cut(s)	1042
FokI	GGATG	4 cut(s)	409, 415, 617, 1040
FriOI	GRGCYC	1 cut(s)	629
Fsp4HI	GCNGC	1 cut(s)	1042
FspBI	CTAG	2 cut(s)	866, 911
GluI	GCNGC	1 cut(s)	1042
HaeIII	GGCC	7 cut(s)	12, 57, 138, 568, 594, 627, 639
HapII	CCGG	5 cut(s)	202, 268, 334, 400, 629
Hin1II	CATG	6 cut(s)	146, 566, 589, 603, 735, 1034
HinfI	GANTC	3 cut(s)	437, 721, 862
HpaII	CCGG	5 cut(s)	202, 268, 334, 400, 629
Hpy166II	GTNNAC	1 cut(s)	575
Hpy188I	TCNGA	6 cut(s)	170, 236, 302, 368, 687, 849
Hpy188III	TCNNGA	4 cut(s)	77, 487, 823, 925
Hpy8I	GTNNAC	1 cut(s)	575
Hpy99I	CGWCG	1 cut(s)	18
HpyAV	CCTTC	2 cut(s)	89, 808
HpyCH4III	ACNGT	1 cut(s)	772
HpyCH4IV	ACGT	2 cut(s)	52, 133
HpyCH4V	TGCA	4 cut(s)	4, 114, 146, 1041
HpyF10VI	GCNNNNNNNGC	5 cut(s)	111, 481, 624, 640, 679
HpySE526I	ACGT	2 cut(s)	52, 133
Hsp92II	CATG	6 cut(s)	146, 566, 589, 603, 735, 1034
KpnI	GGTACC	4 cut(s)	202, 268, 334, 400
Kzo9I	GATC	2 cut(s)	42, 1050
LmnI	GCTCC	1 cut(s)	236
Lsp1109I	GCAGC	1 cut(s)	1053
LweI	GCATC	4 cut(s)	13, 393, 595, 691
MaeI	CTAG	2 cut(s)	866, 911
MaeII	ACGT	2 cut(s)	52, 133
MaeIII	GTNAC	2 cut(s)	887, 906
MalI	GATC	2 cut(s)	44, 1052
MbiI	CCGCTC	2 cut(s)	484, 904
MboI	GATC	2 cut(s)	42, 1050
MboII	GAAGA	5 cut(s)	104, 488, 700, 793, 1046
MhlI	GDGCHC	2 cut(s)	620, 629
MluCI	AATT	7 cut(s)	212, 278, 344, 410, 790, 818, 840
MlyI	GAGTC	2 cut(s)	431, 715
MmeI	TCCRAC	2 cut(s)	859, 956
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	818
MslI	CAYNNNNRTG	1 cut(s)	730
MspI	CCGG	5 cut(s)	202, 268, 334, 400, 629
MspR9I	CCNGG	8 cut(s)	86, 433, 551, 570, 614, 623, 629, 630
Mva1269I	GAATGC	1 cut(s)	1043
MvaI	CCWGG	6 cut(s)	86, 433, 551, 570, 614, 623
MwoI	GCNNNNNNNGC	5 cut(s)	111, 481, 624, 640, 679
NciI	CCSGG	2 cut(s)	629, 630
NcoI	CCATGG	2 cut(s)	562, 585
NdeII	GATC	2 cut(s)	42, 1050
NlaIII	CATG	6 cut(s)	146, 566, 589, 603, 735, 1034
NlaIV	GGNNCC	7 cut(s)	200, 238, 266, 332, 398, 619, 627
NmuCI	GTSAC	1 cut(s)	887
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	146
PasI	CCCWGGG	3 cut(s)	432, 613, 622
PctI	GAATGC	1 cut(s)	1043
PdmI	GAANNNNTTC	1 cut(s)	818
PfeI	GAWTC	1 cut(s)	862
PkrI	GCNGC	1 cut(s)	1043
PleI	GAGTC	2 cut(s)	431, 715
PmaCI	CACGTG	2 cut(s)	53, 134
PmlI	CACGTG	2 cut(s)	53, 134
PpsI	GAGTC	2 cut(s)	431, 715
Ppu21I	YACGTR	2 cut(s)	53, 134
Psp6I	CCWGG	6 cut(s)	84, 431, 549, 568, 612, 621
PspCI	CACGTG	2 cut(s)	53, 134
PspGI	CCWGG	6 cut(s)	84, 431, 549, 568, 612, 621
PspN4I	GGNNCC	7 cut(s)	200, 238, 266, 332, 398, 619, 627
PspOMI	GGGCCC	1 cut(s)	625
PspPI	GGNCC	5 cut(s)	10, 566, 592, 625, 626
RsaI	GTAC	8 cut(s)	200, 266, 332, 398, 545, 555, 801, 1025
RsaNI	GTAC	8 cut(s)	199, 265, 331, 397, 544, 554, 800, 1024
RseI	CAYNNNNRTG	1 cut(s)	730
SatI	GCNGC	1 cut(s)	1042
Sau3AI	GATC	2 cut(s)	42, 1050
Sau96I	GGNCC	5 cut(s)	10, 566, 592, 625, 626
SchI	GAGTC	2 cut(s)	431, 715
ScrFI	CCNGG	8 cut(s)	86, 433, 551, 570, 614, 623, 629, 630
SduI	GDGCHC	2 cut(s)	620, 629
SfaNI	GCATC	4 cut(s)	13, 393, 595, 691
SfcI	CTRYAG	2 cut(s)	470, 522
SmaI	CCCGGG	1 cut(s)	630
SmiMI	CAYNNNNRTG	1 cut(s)	730
SmlI	CTYRAG	3 cut(s)	485, 736, 925
SmoI	CTYRAG	3 cut(s)	485, 736, 925
SpeI	ACTAGT	1 cut(s)	910
Sse9I	AATT	7 cut(s)	212, 278, 344, 410, 790, 818, 840
SsiI	CCGC	4 cut(s)	482, 502, 590, 904
SspMI	CTAG	2 cut(s)	866, 911
StyD4I	CCNGG	8 cut(s)	84, 431, 549, 568, 612, 621, 627, 628
StyI	CCWWGG	2 cut(s)	562, 585
TaaI	ACNGT	1 cut(s)	772
TaiI	ACGT	2 cut(s)	55, 136
TaqI	TCGA	2 cut(s)	16, 707
TasI	AATT	7 cut(s)	212, 278, 344, 410, 790, 818, 840
TatI	WGTACW	1 cut(s)	1023
TfiI	GAWTC	1 cut(s)	862
TscAI	CASTG	1 cut(s)	783
TseFI	GTSAC	1 cut(s)	887
TseI	GCWGC	1 cut(s)	1041
Tsp45I	GTSAC	1 cut(s)	887
TspDTI	ATGAA	1 cut(s)	1047
TspGWI	ACGGA	1 cut(s)	842
TspMI	CCCGGG	1 cut(s)	628
TspRI	CASTG	1 cut(s)	783
XapI	RAATTY	6 cut(s)	212, 278, 344, 410, 790, 818
XceI	RCATGY	1 cut(s)	146
XmaI	CCCGGG	1 cut(s)	628
XmnI	GAANNNNTTC	1 cut(s)	818
XspI	CTAG	2 cut(s)	866, 911
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.