Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004144.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

15506 .. 20494

Gene Structure 4989 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

atgctgcagggctgctacggggcctctgaggggaaggcgagatcgcgagggcagcgagcgagcgagcgagcgtgtgtgagggcaggagagtgttcgcgggggaaggcgagcgttcgctgggaaaggggtagcgaggctaacctggtagggttagcgttgagttgcgatgcaggggctgtgggggtagtggtagcgccagcgccaggtggtctttgtaatggggctaatgggtttttgggtgagaggatcagagagagttttagtaacagggtttgggaaaatcgggtgtccaaggctttgagaactgagaagagtgtcaacaaggcaagacctggtgttgttcgttctgttcttacatcgaaggaccttgaggaggctatgaccttgaaagtccctacttaccacagaccaagagtagaccccaagaatgttgcttcgatcatattaggaggaggggcagggactcagctctttcctcttaccagcagagcagcaacacccgcagttccagtcggtggatgctaccggcttatagacattccgatgagcaattgcatcaacagcaacataaataaaattttcgtgctaacccagtttaattccacttctctcaatcgacaccttgctcgcacctattttggacatggtatcaacttcggggatggatttgtggaggttctggcagccactcaaacacctggggaagcaggaatgaattggttccaaggaacagcagatgctgtgaggcaatttgtatgggtatttgaggatgctaagaatagcaatgttgaaaatatactgattttgtctggtgatcatctttatcgaatggactatatggactttgtgcagagtcatgttgatagcaatgcagatatcacactttcatgtgcagctgtgggtgacagccgtgcatctgattatggattggtgaagatagacagcagaggtagaatcatccagtttgctgaaaaaccaaggggagctaatctaagagcaatgcaagcagatacaacacttcttggactgtctccacaagatgctctaaaatccccatatgttgcatcgatgggagtgtatgtatttaagacggaaattttgctagagcttctgaaaacgagatatccaacatcgaacgactttggatctgaaataattcctgcagcagtgaaagagcgcaatgtccaagtaagaaaaatagcacagtttaagcgtcgtcatttacttattctcagtttccccctattttggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0008150 GO:0008152 GO:0008878 GO:0009058 GO:0009059 GO:0009250 GO:0009501 GO:0009507 GO:0009536 GO:0009987 GO:0010170 GO:0016051 GO:0016740 GO:0016772 GO:0016779 GO:0019252 GO:0032991 GO:0033692 GO:0034637 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0061695 GO:0070566 GO:0071704 GO:1901576 GO:1902494 GO:1902503 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00500 ko00520 ko01100 ko01110 ko02026 map00500 map00520 map01100 map01110 map02026

Pfam Domains

Protein Families

NTP_transferase

Protein Analysis

417

Amino Acids

45.5

Weight (kDa)

9.44

Isoelectric Point (pI)

36.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NTP_transferase	PF00483	146 - 398	5.7e-61	Nucleotidyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	515
AccI	GTMKAC	1 cut(s)	417
AccII	CGCG	2 cut(s)	46, 97
AciI	CCGC	2 cut(s)	97, 501
AclWI	GGATC	2 cut(s)	254, 1153
AcsI	RAATTY	2 cut(s)	576, 1095
AfiI	CCNNNNNNNGG	5 cut(s)	30, 203, 373, 515, 1248
AgsI	TTSAA	2 cut(s)	388, 791
AjnI	CCWGG	4 cut(s)	141, 202, 331, 697
AluBI	AGCT	4 cut(s)	469, 896, 986, 1108
AluI	AGCT	4 cut(s)	469, 896, 986, 1108
Alw26I	GTCTC	1 cut(s)	1035
AlwI	GGATC	2 cut(s)	254, 1153
AlwNI	CAGNNNCTG	2 cut(s)	176, 740
AoxI	GGCC	1 cut(s)	21
ApeKI	GCWGC	7 cut(s)	4, 12, 52, 491, 683, 893, 1163
ApoI	RAATTY	2 cut(s)	576, 1095
ArsI	GACNNNNNNTTYG	2 cut(s)	1081, 1113
Asp700I	GAANNNNTTC	2 cut(s)	719, 1155
AspLEI	GCGC	3 cut(s)	196, 202, 1179
AspS9I	GGNCC	2 cut(s)	21, 364
AsuHPI	GGTGA	4 cut(s)	251, 824, 914, 943
AvaII	GGWCC	1 cut(s)	364
BbvI	GCAGC	5 cut(s)	64, 503, 695, 905, 1175
BccI	CCATC	2 cut(s)	656, 1063
BceAI	ACGGC	1 cut(s)	894
BciT130I	CCWGG	4 cut(s)	143, 204, 333, 699
BclI	TGATCA	1 cut(s)	814
BcoDI	GTCTC	1 cut(s)	1035
BfaI	CTAG	1 cut(s)	1103
BfmI	CTRYAG	2 cut(s)	5, 1161
BfoI	RGCGCY	2 cut(s)	197, 203
BisI	GCNGC	7 cut(s)	5, 13, 53, 492, 684, 894, 1164
BlsI	GCNGC	7 cut(s)	6, 14, 54, 493, 685, 895, 1165
Bme1390I	CCNGG	4 cut(s)	143, 204, 333, 699
Bme18I	GGWCC	1 cut(s)	364
BmgT120I	GGNCC	2 cut(s)	21, 364
BmiI	GGNNCC	2 cut(s)	22, 722
BmrFI	CCNGG	4 cut(s)	143, 204, 333, 699
BmrI	ACTGGG	1 cut(s)	586
BmsI	GCATC	8 cut(s)	157, 509, 564, 727, 760, 923, 1030, 1073
BmuI	ACTGGG	1 cut(s)	586
BpuEI	CTTGAG	1 cut(s)	389
Bsa29I	ATCGAT	1 cut(s)	1067
BsaJI	CCNNGG	4 cut(s)	291, 698, 724, 977
BsaXI	ACNNNNNCTCC	2 cut(s)	1065, 1095
Bsc4I	CCNNNNNNNGG	5 cut(s)	30, 203, 373, 515, 1248
Bse118I	RCCGGY	1 cut(s)	525
Bse1I	ACTGG	3 cut(s)	509, 592, 961
Bse3DI	GCAATG	4 cut(s)	790, 874, 1005, 1186
BseBI	CCWGG	4 cut(s)	143, 204, 333, 699
BseCI	ATCGAT	1 cut(s)	1067
BseDI	CCNNGG	4 cut(s)	291, 698, 724, 977
BseGI	GGATG	4 cut(s)	524, 667, 775, 957
BseLI	CCNNNNNNNGG	5 cut(s)	30, 203, 373, 515, 1248
BseMI	GCAATG	4 cut(s)	790, 874, 1005, 1186
BseMII	CTCAG	4 cut(s)	18, 297, 479, 1246
BseNI	ACTGG	3 cut(s)	509, 592, 961
BseRI	GAGGAG	2 cut(s)	386, 465
BseXI	GCAGC	5 cut(s)	64, 503, 695, 905, 1175
BseYI	CCCAGC	1 cut(s)	117
BsgI	GTGCAG	2 cut(s)	869, 912
Bsh1236I	CGCG	2 cut(s)	46, 97
BshFI	GGCC	1 cut(s)	23
BshVI	ATCGAT	1 cut(s)	1067
BsiSI	CCGG	1 cut(s)	526
BslFI	GGGAC	2 cut(s)	377, 475
BslI	CCNNNNNNNGG	5 cut(s)	30, 203, 373, 515, 1248
BsmAI	GTCTC	1 cut(s)	1035
BsmFI	GGGAC	2 cut(s)	377, 475
BsnI	GGCC	1 cut(s)	23
Bsp143I	GATC	5 cut(s)	41, 246, 438, 814, 1145
Bsp68I	TCGCGA	1 cut(s)	46
BspACI	CCGC	2 cut(s)	97, 501
BspANI	GGCC	1 cut(s)	23
BspCNI	CTCAG	4 cut(s)	19, 298, 478, 1245
BspDI	ATCGAT	1 cut(s)	1067
BspFNI	CGCG	2 cut(s)	46, 97
BspLI	GGNNCC	2 cut(s)	22, 722
BspMAI	CTGCAG	2 cut(s)	9, 1165
BspPI	GGATC	2 cut(s)	254, 1153
BsrDI	GCAATG	4 cut(s)	790, 874, 1005, 1186
BsrFI	RCCGGY	1 cut(s)	525
BsrI	ACTGG	3 cut(s)	509, 592, 961
BssAI	RCCGGY	1 cut(s)	525
BssECI	CCNNGG	4 cut(s)	291, 698, 724, 977
BssMI	GATC	5 cut(s)	41, 246, 438, 814, 1145
BssT1I	CCWWGG	3 cut(s)	291, 724, 977
Bst2UI	CCWGG	4 cut(s)	143, 204, 333, 699
Bst4CI	ACNGT	2 cut(s)	1029, 1206
Bst6I	CTCTTC	1 cut(s)	305
BstC8I	GCNNGC	8 cut(s)	57, 61, 65, 69, 109, 198, 628, 1005
BstDEI	CTNAG	6 cut(s)	27, 306, 465, 774, 992, 1232
BstENI	CCTNNNNNAGG	1 cut(s)	371
BstF5I	GGATG	4 cut(s)	524, 667, 775, 957
BstFNI	CGCG	2 cut(s)	46, 97
BstH2I	RGCGCY	2 cut(s)	197, 203
BstHHI	GCGC	3 cut(s)	196, 202, 1179
BstKTI	GATC	5 cut(s)	44, 249, 441, 817, 1148
BstMAI	GTCTC	1 cut(s)	1035
BstMBI	GATC	5 cut(s)	41, 246, 438, 814, 1145
BstMWI	GCNNNNNNNGC	4 cut(s)	52, 500, 561, 1004
BstNI	CCWGG	4 cut(s)	143, 204, 333, 699
BstSCI	CCNGG	4 cut(s)	141, 202, 331, 697
BstSFI	CTRYAG	2 cut(s)	5, 1161
BstUI	CGCG	2 cut(s)	46, 97
BstV1I	GCAGC	5 cut(s)	64, 503, 695, 905, 1175
BstX2I	RGATCY	1 cut(s)	1145
BstYI	RGATCY	1 cut(s)	1145
Bsu15I	ATCGAT	1 cut(s)	1067
BsuRI	GGCC	1 cut(s)	23
BsuTUI	ATCGAT	1 cut(s)	1067
BtgZI	GCGATG	1 cut(s)	180
BtsCI	GGATG	4 cut(s)	524, 667, 775, 957
BtsI	GCAGTG	1 cut(s)	1173
BtsIMutI	CAGTG	1 cut(s)	1173
BtuMI	TCGCGA	1 cut(s)	46
Cac8I	GCNNGC	8 cut(s)	57, 61, 65, 69, 109, 198, 628, 1005
CaiI	CAGNNNCTG	2 cut(s)	176, 740
CfoI	GCGC	3 cut(s)	196, 202, 1179
Cfr10I	RCCGGY	1 cut(s)	525
Cfr13I	GGNCC	2 cut(s)	21, 364
ClaI	ATCGAT	1 cut(s)	1067
CseI	GACGC	1 cut(s)	1202
CsiI	ACCWGGT	2 cut(s)	141, 331
CviAII	CATG	3 cut(s)	644, 857, 888
DdeI	CTNAG	6 cut(s)	27, 306, 465, 774, 992, 1232
DpnI	GATC	5 cut(s)	43, 248, 440, 816, 1147
DpnII	GATC	5 cut(s)	41, 246, 438, 814, 1145
Eam1104I	CTCTTC	1 cut(s)	305
EarI	CTCTTC	1 cut(s)	305
Eco130I	CCWWGG	3 cut(s)	291, 724, 977
Eco32I	GATATC	2 cut(s)	877, 1124
Eco47I	GGWCC	1 cut(s)	364
EcoNI	CCTNNNNNAGG	1 cut(s)	371
EcoO109I	RGGNCCY	2 cut(s)	21, 364
EcoRII	CCWGG	4 cut(s)	141, 202, 331, 697
EcoRV	GATATC	2 cut(s)	877, 1124
EcoT14I	CCWWGG	3 cut(s)	291, 724, 977
ErhI	CCWWGG	3 cut(s)	291, 724, 977
FaeI	CATG	3 cut(s)	647, 860, 891
FaqI	GGGAC	2 cut(s)	377, 475
FatI	CATG	3 cut(s)	643, 856, 887
FauI	CCCGC	2 cut(s)	90, 508
FauNDI	CATATG	1 cut(s)	1057
FbaI	TGATCA	1 cut(s)	814
FblI	GTMKAC	1 cut(s)	417
Fnu4HI	GCNGC	7 cut(s)	5, 13, 53, 492, 684, 894, 1164
FokI	GGATG	4 cut(s)	531, 674, 782, 944
Fsp4HI	GCNGC	7 cut(s)	5, 13, 53, 492, 684, 894, 1164
FspBI	CTAG	1 cut(s)	1103
GlaI	GCGC	3 cut(s)	195, 201, 1178
GluI	GCNGC	7 cut(s)	5, 13, 53, 492, 684, 894, 1164
GsaI	CCCAGC	1 cut(s)	121
HaeII	RGCGCY	2 cut(s)	197, 203
HaeIII	GGCC	1 cut(s)	23
HapII	CCGG	1 cut(s)	526
HgaI	GACGC	1 cut(s)	1202
HhaI	GCGC	3 cut(s)	196, 202, 1179
Hin1II	CATG	3 cut(s)	647, 860, 891
Hin6I	GCGC	3 cut(s)	194, 200, 1177
HinP1I	GCGC	3 cut(s)	194, 200, 1177
HincII	GTYRAC	1 cut(s)	319
HindII	GTYRAC	1 cut(s)	319
HinfI	GANTC	3 cut(s)	463, 853, 954
HpaII	CCGG	1 cut(s)	526
HphI	GGTGA	4 cut(s)	251, 824, 914, 943
Hpy166II	GTNNAC	2 cut(s)	319, 418
Hpy188I	TCNGA	6 cut(s)	28, 251, 543, 919, 1113, 1150
Hpy188III	TCNNGA	1 cut(s)	45
Hpy8I	GTNNAC	2 cut(s)	319, 418
Hpy99I	CGWCG	1 cut(s)	1218
HpyAV	CCTTC	3 cut(s)	28, 97, 355
HpyCH4III	ACNGT	2 cut(s)	1029, 1206
HpyF10VI	GCNNNNNNNGC	4 cut(s)	52, 500, 561, 1004
HpyF3I	CTNAG	6 cut(s)	27, 306, 465, 774, 992, 1232
Hsp92II	CATG	3 cut(s)	647, 860, 891
HspAI	GCGC	3 cut(s)	194, 200, 1177
Ksp22I	TGATCA	1 cut(s)	814
Kzo9I	GATC	5 cut(s)	41, 246, 438, 814, 1145
LmnI	GCTCC	1 cut(s)	983
Lsp1109I	GCAGC	5 cut(s)	64, 503, 695, 905, 1175
LweI	GCATC	8 cut(s)	157, 509, 564, 727, 760, 923, 1030, 1073
MabI	ACCWGGT	2 cut(s)	141, 331
MaeI	CTAG	1 cut(s)	1103
MaeIII	GTNAC	2 cut(s)	263, 902
MalI	GATC	5 cut(s)	43, 248, 440, 816, 1147
MboI	GATC	5 cut(s)	41, 246, 438, 814, 1145
MboII	GAAGA	2 cut(s)	322, 946
MfeI	CAATTG	1 cut(s)	550
MflI	RGATCY	1 cut(s)	1145
MluCI	AATT	7 cut(s)	550, 576, 598, 715, 749, 1095, 1155
MlyI	GAGTC	2 cut(s)	457, 862
MmeI	TCCRAC	1 cut(s)	1151
MroXI	GAANNNNTTC	2 cut(s)	719, 1155
MseI	TTAA	3 cut(s)	597, 1086, 1209
MslI	CAYNNNNRTG	2 cut(s)	542, 886
MspA1I	CMGCKG	1 cut(s)	896
MspI	CCGG	1 cut(s)	526
MspR9I	CCNGG	4 cut(s)	143, 204, 333, 699
MunI	CAATTG	1 cut(s)	550
MvaI	CCWGG	4 cut(s)	143, 204, 333, 699
MvnI	CGCG	2 cut(s)	46, 97
MwoI	GCNNNNNNNGC	4 cut(s)	52, 500, 561, 1004
NdeI	CATATG	1 cut(s)	1057
NdeII	GATC	5 cut(s)	41, 246, 438, 814, 1145
NlaIII	CATG	3 cut(s)	647, 860, 891
NlaIV	GGNNCC	2 cut(s)	22, 722
NmuCI	GTSAC	1 cut(s)	902
NruI	TCGCGA	1 cut(s)	46
PdmI	GAANNNNTTC	2 cut(s)	719, 1155
PfeI	GAWTC	1 cut(s)	954
PflMI	CCANNNNNTGG	1 cut(s)	515
PkrI	GCNGC	7 cut(s)	6, 14, 54, 493, 685, 895, 1165
PleI	GAGTC	2 cut(s)	457, 861
PpsI	GAGTC	2 cut(s)	457, 861
PpuMI	RGGWCCY	1 cut(s)	364
Psp5II	RGGWCCY	1 cut(s)	364
Psp6I	CCWGG	4 cut(s)	141, 202, 331, 697
PspFI	CCCAGC	1 cut(s)	117
PspGI	CCWGG	4 cut(s)	141, 202, 331, 697
PspN4I	GGNNCC	2 cut(s)	22, 722
PspPI	GGNCC	2 cut(s)	21, 364
PspPPI	RGGWCCY	1 cut(s)	364
PstI	CTGCAG	2 cut(s)	9, 1165
PstNI	CAGNNNCTG	2 cut(s)	176, 740
PsuI	RGATCY	1 cut(s)	1145
PvuII	CAGCTG	1 cut(s)	896
RruI	TCGCGA	1 cut(s)	46
RseI	CAYNNNNRTG	2 cut(s)	542, 886
SaqAI	TTAA	3 cut(s)	597, 1086, 1209
SatI	GCNGC	7 cut(s)	5, 13, 53, 492, 684, 894, 1164
Sau3AI	GATC	5 cut(s)	41, 246, 438, 814, 1145
Sau96I	GGNCC	2 cut(s)	21, 364
SchI	GAGTC	2 cut(s)	457, 862
ScrFI	CCNGG	4 cut(s)	143, 204, 333, 699
SexAI	ACCWGGT	2 cut(s)	141, 331
SfaNI	GCATC	8 cut(s)	157, 509, 564, 727, 760, 923, 1030, 1073
SfcI	CTRYAG	2 cut(s)	5, 1161
SinI	GGWCC	1 cut(s)	364
SmiMI	CAYNNNNRTG	2 cut(s)	542, 886
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
Sse9I	AATT	7 cut(s)	550, 576, 598, 715, 749, 1095, 1155
SsiI	CCGC	2 cut(s)	97, 501
SspMI	CTAG	1 cut(s)	1103
StyD4I	CCNGG	4 cut(s)	141, 202, 331, 697
StyI	CCWWGG	3 cut(s)	291, 724, 977
TaaI	ACNGT	2 cut(s)	1029, 1206
TaqI	TCGA	6 cut(s)	359, 437, 616, 826, 1067, 1133
TasI	AATT	7 cut(s)	550, 576, 598, 715, 749, 1095, 1155
TfiI	GAWTC	1 cut(s)	954
Tru1I	TTAA	3 cut(s)	597, 1086, 1209
Tru9I	TTAA	3 cut(s)	597, 1086, 1209
TscAI	CASTG	1 cut(s)	1173
TseFI	GTSAC	1 cut(s)	902
TseI	GCWGC	7 cut(s)	4, 12, 52, 491, 683, 893, 1163
Tsp45I	GTSAC	1 cut(s)	902
TspDTI	ATGAA	2 cut(s)	728, 876
TspGWI	ACGGA	1 cut(s)	1106
TspRI	CASTG	1 cut(s)	1173
Van91I	CCANNNNNTGG	1 cut(s)	515
VpaK11BI	GGWCC	1 cut(s)	364
XagI	CCTNNNNNAGG	1 cut(s)	371
XapI	RAATTY	2 cut(s)	576, 1095
XmiI	GTMKAC	1 cut(s)	417
XmnI	GAANNNNTTC	2 cut(s)	719, 1155
XspI	CTAG	1 cut(s)	1103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.