Rmu_sc0004149.1_g000002

Ribosomal protein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004149.1
N/A
Physical Location & Seq
Reverse (-)
7145 .. 7701
557 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 330 bp
atgatgcgcgacgtggccaacaacgacccatattttgttcaaataagagatgcttgtgggagactcagcttatccactgaacaaaagatgacatgcgccatgagaatgctcgcgtatggcatcacagctgatttatggcagtatactggctacaaggggaaacccacaatcatcttagaggcggtggcctcttacgatacttggattcggcatgccttcttcgaacttccaggttccctgaatgatattaacgtccttggatgtgtttgcctcaaaatcgtctcggccgaagtgagggccgagggacctgtggttgaattgtccttctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plant_tran

Protein Analysis

109

Amino Acids

12.2

Weight (kDa)

5.26

Isoelectric Point (pI)

18.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Plant_tran PF04827 42 - 87 3e-13 Plant transposon protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 143
AccII CGCG 2 cut(s) 9, 113
AciI CCGC 1 cut(s) 182
AcoI YGGCCR 2 cut(s) 15, 285
AfiI CCNNNNNNNGG 1 cut(s) 294
AgsI TTSAA 2 cut(s) 41, 317
AjiI CACGTC 1 cut(s) 13
AjnI CCWGG 1 cut(s) 229
AluBI AGCT 2 cut(s) 69, 128
AluI AGCT 2 cut(s) 69, 128
Alw26I GTCTC 2 cut(s) 55, 286
AoxI GGCC 4 cut(s) 15, 186, 285, 297
ArsI GACNNNNNNTTYG 2 cut(s) 17, 49
AspLEI GCGC 2 cut(s) 9, 98
AspS9I GGNCC 2 cut(s) 297, 305
AsuII TTCGAA 1 cut(s) 222
AvaII GGWCC 1 cut(s) 305
BalI TGGCCA 1 cut(s) 17
BciT130I CCWGG 1 cut(s) 231
BcoDI GTCTC 2 cut(s) 55, 286
Bme1390I CCNGG 1 cut(s) 231
Bme18I GGWCC 1 cut(s) 305
BmgBI CACGTC 1 cut(s) 13
BmgT120I GGNCC 2 cut(s) 297, 305
BmiI GGNNCC 2 cut(s) 235, 306
BmrFI CCNGG 1 cut(s) 231
BmsI GCATC 2 cut(s) 40, 129
Bpu14I TTCGAA 1 cut(s) 222
BsaJI CCNNGG 2 cut(s) 256, 300
Bsc4I CCNNNNNNNGG 1 cut(s) 294
Bse1I ACTGG 1 cut(s) 151
BseBI CCWGG 1 cut(s) 231
BseDI CCNNGG 2 cut(s) 256, 300
BseGI GGATG 1 cut(s) 266
BseLI CCNNNNNNNGG 1 cut(s) 294
BseMII CTCAG 1 cut(s) 79
BseNI ACTGG 1 cut(s) 151
BseX3I CGGCCG 1 cut(s) 285
Bsh1236I CGCG 2 cut(s) 9, 113
Bsh1285I CGRYCG 1 cut(s) 288
BshFI GGCC 4 cut(s) 17, 188, 287, 299
BsiEI CGRYCG 1 cut(s) 288
BslFI GGGAC 1 cut(s) 318
BslI CCNNNNNNNGG 1 cut(s) 294
BsmAI GTCTC 2 cut(s) 55, 286
BsmBI CGTCTC 1 cut(s) 286
BsmFI GGGAC 1 cut(s) 318
BsmI GAATGC 1 cut(s) 111
BsnI GGCC 4 cut(s) 17, 188, 287, 299
Bsp119I TTCGAA 1 cut(s) 222
BspACI CCGC 1 cut(s) 182
BspANI GGCC 4 cut(s) 17, 188, 287, 299
BspCNI CTCAG 1 cut(s) 78
BspFNI CGCG 2 cut(s) 9, 113
BspLI GGNNCC 2 cut(s) 235, 306
BspT104I TTCGAA 1 cut(s) 222
BsrI ACTGG 1 cut(s) 151
BssECI CCNNGG 2 cut(s) 256, 300
BssNAI GTATAC 1 cut(s) 144
BssT1I CCWWGG 1 cut(s) 256
Bst1107I GTATAC 1 cut(s) 144
Bst2UI CCWGG 1 cut(s) 231
BstBI TTCGAA 1 cut(s) 222
BstC8I GCNNGC 2 cut(s) 111, 213
BstDEI CTNAG 2 cut(s) 65, 175
BstF5I GGATG 1 cut(s) 266
BstFNI CGCG 2 cut(s) 9, 113
BstHHI GCGC 2 cut(s) 9, 98
BstMAI GTCTC 2 cut(s) 55, 286
BstMCI CGRYCG 1 cut(s) 288
BstNI CCWGG 1 cut(s) 231
BstNSI RCATGY 2 cut(s) 96, 215
BstSCI CCNGG 1 cut(s) 229
BstUI CGCG 2 cut(s) 9, 113
BstZ17I GTATAC 1 cut(s) 144
BstZI CGGCCG 1 cut(s) 285
BsuRI GGCC 4 cut(s) 17, 188, 287, 299
BtrI CACGTC 1 cut(s) 13
BtsCI GGATG 1 cut(s) 266
BtsIMutI CAGTG 1 cut(s) 75
Cac8I GCNNGC 2 cut(s) 111, 213
CfoI GCGC 2 cut(s) 9, 98
Cfr13I GGNCC 2 cut(s) 297, 305
CviAII CATG 3 cut(s) 93, 100, 212
CviJI RGCY 7 cut(s) 17, 69, 128, 150, 188, 287, 299
CviKI_1 RGCY 7 cut(s) 17, 69, 128, 150, 188, 287, 299
DdeI CTNAG 2 cut(s) 65, 175
EaeI YGGCCR 2 cut(s) 15, 285
EagI CGGCCG 1 cut(s) 285
EclXI CGGCCG 1 cut(s) 285
Eco130I CCWWGG 1 cut(s) 256
Eco47I GGWCC 1 cut(s) 305
Eco52I CGGCCG 1 cut(s) 285
EcoO109I RGGNCCY 1 cut(s) 305
EcoRII CCWGG 1 cut(s) 229
EcoT14I CCWWGG 1 cut(s) 256
ErhI CCWWGG 1 cut(s) 256
Esp3I CGTCTC 1 cut(s) 286
FaeI CATG 3 cut(s) 96, 103, 215
FaiI YATR 7 cut(s) 31, 94, 101, 117, 136, 144, 213
FalI AAGNNNNNCTT 2 cut(s) 37, 69
FaqI GGGAC 1 cut(s) 318
FatI CATG 3 cut(s) 92, 99, 211
FblI GTMKAC 1 cut(s) 143
FokI GGATG 1 cut(s) 273
GlaI GCGC 2 cut(s) 8, 97
HaeIII GGCC 4 cut(s) 17, 188, 287, 299
HhaI GCGC 2 cut(s) 9, 98
Hin1II CATG 3 cut(s) 96, 103, 215
Hin6I GCGC 2 cut(s) 7, 96
HinP1I GCGC 2 cut(s) 7, 96
HinfI GANTC 2 cut(s) 63, 205
Hpy166II GTNNAC 1 cut(s) 144
Hpy188I TCNGA 1 cut(s) 329
Hpy8I GTNNAC 1 cut(s) 144
Hpy99I CGWCG 1 cut(s) 14
HpyAV CCTTC 1 cut(s) 226
HpyCH4IV ACGT 2 cut(s) 12, 252
HpyF3I CTNAG 2 cut(s) 65, 175
HpySE526I ACGT 2 cut(s) 12, 252
Hsp92II CATG 3 cut(s) 96, 103, 215
HspAI GCGC 2 cut(s) 7, 96
LpnPI CCDG 5 cut(s) 132, 216, 243, 251, 321
LweI GCATC 2 cut(s) 40, 129
MaeII ACGT 2 cut(s) 12, 252
MboII GAAGA 1 cut(s) 211
MlsI TGGCCA 1 cut(s) 17
MluCI AATT 1 cut(s) 317
MluNI TGGCCA 1 cut(s) 17
MlyI GAGTC 1 cut(s) 57
MnlI CCTC 5 cut(s) 172, 199, 281, 288, 295
Mox20I TGGCCA 1 cut(s) 17
MscI TGGCCA 1 cut(s) 17
MseI TTAA 1 cut(s) 249
MslI CAYNNNNRTG 1 cut(s) 104
Msp20I TGGCCA 1 cut(s) 17
MspA1I CMGCKG 1 cut(s) 128
MspR9I CCNGG 1 cut(s) 231
Mva1269I GAATGC 1 cut(s) 111
MvaI CCWGG 1 cut(s) 231
MvnI CGCG 2 cut(s) 9, 113
NlaIII CATG 3 cut(s) 96, 103, 215
NlaIV GGNNCC 2 cut(s) 235, 306
NmeAIII GCCGAG 2 cut(s) 263, 325
NspI RCATGY 2 cut(s) 96, 215
NspV TTCGAA 1 cut(s) 222
PaeI GCATGC 1 cut(s) 215
PcsI WCGNNNNNNNCGW 1 cut(s) 285
PctI GAATGC 1 cut(s) 111
PfeI GAWTC 1 cut(s) 205
PleI GAGTC 1 cut(s) 57
PpsI GAGTC 1 cut(s) 57
PpuMI RGGWCCY 1 cut(s) 305
Psp5II RGGWCCY 1 cut(s) 305
Psp6I CCWGG 1 cut(s) 229
PspGI CCWGG 1 cut(s) 229
PspN4I GGNNCC 2 cut(s) 235, 306
PspPI GGNCC 2 cut(s) 297, 305
PspPPI RGGWCCY 1 cut(s) 305
PvuII CAGCTG 1 cut(s) 128
RseI CAYNNNNRTG 1 cut(s) 104
SaqAI TTAA 1 cut(s) 249
Sau96I GGNCC 2 cut(s) 297, 305
SchI GAGTC 1 cut(s) 57
ScrFI CCNGG 1 cut(s) 231
SetI ASST 6 cut(s) 15, 71, 130, 235, 255, 310
SfaNI GCATC 2 cut(s) 40, 129
SfuI TTCGAA 1 cut(s) 222
SinI GGWCC 1 cut(s) 305
SmiMI CAYNNNNRTG 1 cut(s) 104
SphI GCATGC 1 cut(s) 215
Sse9I AATT 1 cut(s) 317
SsiI CCGC 1 cut(s) 182
StyD4I CCNGG 1 cut(s) 229
StyI CCWWGG 1 cut(s) 256
TaiI ACGT 2 cut(s) 15, 255
TaqI TCGA 1 cut(s) 222
TasI AATT 1 cut(s) 317
TfiI GAWTC 1 cut(s) 205
Tru1I TTAA 1 cut(s) 249
Tru9I TTAA 1 cut(s) 249
TscAI CASTG 1 cut(s) 82
TspRI CASTG 1 cut(s) 82
VpaK11BI GGWCC 1 cut(s) 305
XceI RCATGY 2 cut(s) 96, 215
XmiI GTMKAC 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.